BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 99873.f
(900 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568989.1| non-phototropic hypocotyl 3 (gb|AAF05914.1... 428 e-119
gb|AAF05914.1|AF180390_1 non-phototropic hypocotyl 3 [Arabi... 428 e-119
ref|NP_176957.1| unknown protein; protein id: At1g67900.1 [... 133 4e-30
gb|AAM61364.1| non-phototropic hypocotyl protein, putative ... 131 1e-29
ref|NP_188176.1| non-phototropic hypocotyl protein, putativ... 131 1e-29
>ref|NP_568989.1| non-phototropic hypocotyl 3 (gb|AAF05914.1); protein id: At5g64330.1,
supported by cDNA: gi_6224711 [Arabidopsis thaliana]
Length = 746
Score = 428 bits (1101), Expect = e-119
Identities = 228/275 (82%), Positives = 229/275 (82%)
Frame = -1
Query: 825 QVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSAIXXXXXXXGDEMXXXXXXXX 646
+VKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSAI GDEM
Sbjct: 272 KVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSAIGGGLGLGGDEMSISCGSNS 331
Query: 645 XXXXXGPDWKGGLHMVLSAGKTNGHQDSVACLAGLGISPKDQRMIVESLISIIPPQKDSV 466
GPDWKGGLHMVLSAGKTNGHQDSVACLAGLGISPKDQRMIVESLISIIPPQKDSV
Sbjct: 332 SGGSSGPDWKGGLHMVLSAGKTNGHQDSVACLAGLGISPKDQRMIVESLISIIPPQKDSV 391
Query: 465 TCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLLIPGYNNKGETMYDVDLVQ 286
TCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLLIPGYNNKGETMYDVDLVQ
Sbjct: 392 TCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLLIPGYNNKGETMYDVDLVQ 451
Query: 285 RLLEHFLVQEQTEGXXXXXXXXXXXXSMYADIPRXXXXXXXXXXXXXXNAKMRVARLVDS 106
RLLEHFLVQEQTEG SMYADIPR NAKMRVARLVDS
Sbjct: 452 RLLEHFLVQEQTEGSSPSRMSPSPSQSMYADIPRGNNNNGGGGGGNNQNAKMRVARLVDS 511
Query: 105 YLTEVARDRNLPLTKFQVLAEALPESARTCDDGLY 1
YLTEVARDRNLPLTKFQVLAEALPESARTCDDGLY
Sbjct: 512 YLTEVARDRNLPLTKFQVLAEALPESARTCDDGLY 546
>gb|AAF05914.1|AF180390_1 non-phototropic hypocotyl 3 [Arabidopsis thaliana]
Length = 745
Score = 428 bits (1101), Expect = e-119
Identities = 228/275 (82%), Positives = 229/275 (82%)
Frame = -1
Query: 825 QVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSAIXXXXXXXGDEMXXXXXXXX 646
+VKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSAI GDEM
Sbjct: 271 KVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSAIGGGLGLGGDEMSISCGSNS 330
Query: 645 XXXXXGPDWKGGLHMVLSAGKTNGHQDSVACLAGLGISPKDQRMIVESLISIIPPQKDSV 466
GPDWKGGLHMVLSAGKTNGHQDSVACLAGLGISPKDQRMIVESLISIIPPQKDSV
Sbjct: 331 SGGSSGPDWKGGLHMVLSAGKTNGHQDSVACLAGLGISPKDQRMIVESLISIIPPQKDSV 390
Query: 465 TCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLLIPGYNNKGETMYDVDLVQ 286
TCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLLIPGYNNKGETMYDVDLVQ
Sbjct: 391 TCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLLIPGYNNKGETMYDVDLVQ 450
Query: 285 RLLEHFLVQEQTEGXXXXXXXXXXXXSMYADIPRXXXXXXXXXXXXXXNAKMRVARLVDS 106
RLLEHFLVQEQTEG SMYADIPR NAKMRVARLVDS
Sbjct: 451 RLLEHFLVQEQTEGSSPSRMSPSPSQSMYADIPRGNNNNGGGGGGNNQNAKMRVARLVDS 510
Query: 105 YLTEVARDRNLPLTKFQVLAEALPESARTCDDGLY 1
YLTEVARDRNLPLTKFQVLAEALPESARTCDDGLY
Sbjct: 511 YLTEVARDRNLPLTKFQVLAEALPESARTCDDGLY 545
>ref|NP_176957.1| unknown protein; protein id: At1g67900.1 [Arabidopsis
thaliana]|gi|25336217|pir||G96701 unknown protein,
76653-74502 [imported] - Arabidopsis
thaliana|gi|12324088|gb|AAG52016.1|AC012563_26 unknown
protein; 76653-74502 [Arabidopsis
thaliana]|gi|21539469|gb|AAM53287.1| unknown protein
[Arabidopsis thaliana]
Length = 631
Score = 133 bits (334), Expect = 4e-30
Identities = 74/178 (41%), Positives = 109/178 (60%), Gaps = 5/178 (2%)
Frame = -1
Query: 519 RMIVESLISIIPPQKDSVTCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLL 340
R+++ES+IS++P +K +V+CSFLL+LL+AAN+L + + EL +RV +Q E+AT+ DLL
Sbjct: 273 RLLLESIISLLPAEKGAVSCSFLLKLLKAANILNASTSSKMELARRVALQLEEATVSDLL 332
Query: 339 IPGYNNKGETMYDVDLVQRLLEHFLVQEQTEGXXX-----XXXXXXXXXSMYADIPRXXX 175
IP + K E +YDVD+V +LE F+VQ QT S A+
Sbjct: 333 IPPMSYKSELLYDVDIVATILEQFMVQGQTSPPTSPLRGKKGMMDRRRRSRSAENIDLEF 392
Query: 174 XXXXXXXXXXXNAKMRVARLVDSYLTEVARDRNLPLTKFQVLAEALPESARTCDDGLY 1
++K++VA+LVD YL ++ARD NLPL+KF LAE++PE +R D LY
Sbjct: 393 QESRRSSSASHSSKLKVAKLVDGYLQQIARDVNLPLSKFVTLAESVPEFSRLDHDDLY 450
>gb|AAM61364.1| non-phototropic hypocotyl protein, putative [Arabidopsis thaliana]
Length = 429
Score = 131 bits (330), Expect = 1e-29
Identities = 98/296 (33%), Positives = 137/296 (46%)
Frame = -1
Query: 888 FFSQAFSQTLGVHISILYPLKQVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSS 709
+F ++ Q + + + +K KG+R +L+G++I HYA KWLP L G V S
Sbjct: 6 YFDESCIQDMNYFVKTITGIKS-KGIRPDLIGSIIAHYASKWLPDL--SGNV-------S 55
Query: 708 AIXXXXXXXGDEMXXXXXXXXXXXXXGPDWKGGLHMVLSAGKTNGHQDSVACLAGLGISP 529
AI S N H D+ + S
Sbjct: 56 AIISST--------------------------------SLESKNNHNDTQP--ESVTASV 81
Query: 528 KDQRMIVESLISIIPPQKDSVTCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQ 349
+R VE+LI I+PP+KDSV C+FLLRLLR A M+ P +TELE RV Q +QA+L+
Sbjct: 82 MKKRFFVETLIGILPPEKDSVPCNFLLRLLRTAKMVGANPNYLTELETRVSWQLDQASLK 141
Query: 348 DLLIPGYNNKGETMYDVDLVQRLLEHFLVQEQTEGXXXXXXXXXXXXSMYADIPRXXXXX 169
+L+IP ++ T+ D++LV RL+ F + +EG
Sbjct: 142 ELMIPSFSYTSGTLLDIELVTRLVNKFSGLD-SEG------------------------- 175
Query: 168 XXXXXXXXXNAKMRVARLVDSYLTEVARDRNLPLTKFQVLAEALPESARTCDDGLY 1
A ++VA+LVDSYL E A D L L +F L ALP ART +DGLY
Sbjct: 176 -----VKTAAALVKVAKLVDSYLAEAAVDGGLALPEFISLITALPSHARTTEDGLY 226
>ref|NP_188176.1| non-phototropic hypocotyl protein, putative; protein id:
At3g15570.1, supported by cDNA: 118259. [Arabidopsis
thaliana]|gi|11994224|dbj|BAB01346.1| non-phototropic
hypocotyl-like protein [Arabidopsis thaliana]
Length = 452
Score = 131 bits (330), Expect = 1e-29
Identities = 98/296 (33%), Positives = 137/296 (46%)
Frame = -1
Query: 888 FFSQAFSQTLGVHISILYPLKQVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSS 709
+F ++ Q + + + +K KG+R +L+G++I HYA KWLP L G V S
Sbjct: 29 YFDESCIQDMNYFVKTITGIKS-KGIRPDLIGSIIAHYASKWLPDL--SGNV-------S 78
Query: 708 AIXXXXXXXGDEMXXXXXXXXXXXXXGPDWKGGLHMVLSAGKTNGHQDSVACLAGLGISP 529
AI S N H D+ + S
Sbjct: 79 AIISST--------------------------------SLESKNNHNDTQP--ESVTASV 104
Query: 528 KDQRMIVESLISIIPPQKDSVTCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQ 349
+R VE+LI I+PP+KDSV C+FLLRLLR A M+ P +TELE RV Q +QA+L+
Sbjct: 105 MKKRFFVETLIGILPPEKDSVPCNFLLRLLRTAKMVGANPNYLTELETRVSWQLDQASLK 164
Query: 348 DLLIPGYNNKGETMYDVDLVQRLLEHFLVQEQTEGXXXXXXXXXXXXSMYADIPRXXXXX 169
+L+IP ++ T+ D++LV RL+ F + +EG
Sbjct: 165 ELMIPSFSYTSGTLLDIELVTRLVNKFSGLD-SEG------------------------- 198
Query: 168 XXXXXXXXXNAKMRVARLVDSYLTEVARDRNLPLTKFQVLAEALPESARTCDDGLY 1
A ++VA+LVDSYL E A D L L +F L ALP ART +DGLY
Sbjct: 199 -----VKTAAALVKVAKLVDSYLAEAAVDGGLALPEFISLITALPSHARTTEDGLY 249
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 122
effective length of database: 265,824,929
effective search space used: 47051012433
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)