BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 12159.f
         (828 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM61485.1|  unknown [Arabidopsis thaliana]                    197   2e-49
ref|NP_565234.1|  Expressed protein; protein id: At1g80245.1...   195   7e-49
ref|NP_680548.1|  hypothetical protein; protein id: At4g0069...   155   9e-37
gb|AAD55478.1|AC009322_18  Hypothetical protein [Arabidopsis...   131   1e-29
ref|XP_242978.1|  hypothetical protein XP_242978 [Rattus nor...    33   6.4  

>gb|AAM61485.1| unknown [Arabidopsis thaliana]
          Length = 127

 Score =  197 bits (500), Expect = 2e-49
 Identities = 100/116 (86%), Positives = 100/116 (86%)
 Frame = +1

Query: 121 MEELTQILKNNSTDDLTWFCXXXXXXXXXXXXXXXXAIQRAKISGHQELADKFDLKLLRS 300
           MEELTQILKNNSTDDLTWFC                AIQRAKISGHQELADKFDLKLLRS
Sbjct: 1   MEELTQILKNNSTDDLTWFCSLSESELDLLISLKKLAIQRAKISGHQELADKFDLKLLRS 60

Query: 301 LGLVLMEHARKRVQNDTSLAPSVVHQLRLLDNCNLLKTHVDDAVDIEEILTQICDN 468
           LGLVLMEHARKRVQNDTSLAPSVVHQLRLLDNCNLLKTHVDDAVDIEEILTQICDN
Sbjct: 61  LGLVLMEHARKRVQNDTSLAPSVVHQLRLLDNCNLLKTHVDDAVDIEEILTQICDN 116



>ref|NP_565234.1| Expressed protein; protein id: At1g80245.1, supported by cDNA:
           12159. [Arabidopsis thaliana]
          Length = 127

 Score =  195 bits (495), Expect = 7e-49
 Identities = 99/116 (85%), Positives = 99/116 (85%)
 Frame = +1

Query: 121 MEELTQILKNNSTDDLTWFCXXXXXXXXXXXXXXXXAIQRAKISGHQELADKFDLKLLRS 300
           MEELTQILKNN TDDLTWFC                AIQRAKISGHQELADKFDLKLLRS
Sbjct: 1   MEELTQILKNNRTDDLTWFCSLSESELDLLISLKKLAIQRAKISGHQELADKFDLKLLRS 60

Query: 301 LGLVLMEHARKRVQNDTSLAPSVVHQLRLLDNCNLLKTHVDDAVDIEEILTQICDN 468
           LGLVLMEHARKRVQNDTSLAPSVVHQLRLLDNCNLLKTHVDDAVDIEEILTQICDN
Sbjct: 61  LGLVLMEHARKRVQNDTSLAPSVVHQLRLLDNCNLLKTHVDDAVDIEEILTQICDN 116



>ref|NP_680548.1| hypothetical protein; protein id: At4g00695.1 [Arabidopsis
           thaliana]
          Length = 176

 Score =  155 bits (391), Expect = 9e-37
 Identities = 79/116 (68%), Positives = 91/116 (78%), Gaps = 1/116 (0%)
 Frame = +1

Query: 121 MEELTQILKNNSTDDLTWFCXXXXXXXXXXXXXXXXAIQRAKISGHQEL-ADKFDLKLLR 297
           MEEL+QILKNN TDDLTWFC                 I+RAK+SG ++L ADKFDLK+LR
Sbjct: 1   MEELSQILKNNRTDDLTWFCSLSESELDLLISLKKLVIRRAKVSGLEDLVADKFDLKMLR 60

Query: 298 SLGLVLMEHARKRVQNDTSLAPSVVHQLRLLDNCNLLKTHVDDAVDIEEILTQICD 465
           SLGLVLME+ RKRV++DTSLAPSVV +L LLD+CNLLKTHVDD VDIEEILT IC+
Sbjct: 61  SLGLVLMEYVRKRVEDDTSLAPSVVQELSLLDSCNLLKTHVDDTVDIEEILTDICN 116



>gb|AAD55478.1|AC009322_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 898

 Score =  131 bits (330), Expect = 1e-29
 Identities = 83/145 (57%), Positives = 90/145 (61%), Gaps = 5/145 (3%)
 Frame = +1

Query: 49  PQTHLSNLLKAFIAIDCS*GIAIRMEELTQILKNNSTDDLTWFCXXXXXXXXXXXXXXXX 228
           PQTHLSNLLKAFIAIDCS         L ++L N+                         
Sbjct: 49  PQTHLSNLLKAFIAIDCS---------LFKMLHNH------------------------- 74

Query: 229 AIQRAKISGHQELADK---FDLK--LLRSLGLVLMEHARKRVQNDTSLAPSVVHQLRLLD 393
             + + +  HQ    K   FDL   +  S GLVLMEHARKRVQNDTSLAPSVVHQLRLLD
Sbjct: 75  --ENSSMIRHQGCFVKLSIFDLMNPVCYSAGLVLMEHARKRVQNDTSLAPSVVHQLRLLD 132

Query: 394 NCNLLKTHVDDAVDIEEILTQICDN 468
           NCNLLKTHVDDAVDIEEILTQICDN
Sbjct: 133 NCNLLKTHVDDAVDIEEILTQICDN 157



>ref|XP_242978.1| hypothetical protein XP_242978 [Rattus norvegicus]
          Length = 106

 Score = 32.7 bits (73), Expect = 6.4
 Identities = 17/43 (39%), Positives = 23/43 (52%)
 Frame = -1

Query: 171 SEIICTIVLQDLG*FLHPNCYPLRAIYCNEGLQKIREMCLWET 43
           S +  T+VLQ L   LHP   P R +   + L +I+E C W T
Sbjct: 31  SNLYETLVLQCLWDRLHPGRSPFRVLCQRDCLLRIQEQCTWRT 73



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 121
effective length of database: 267,163,975
effective search space used: 41143252150
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)