BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 116789.f
         (786 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||D86302  hypothetical protein F17F16.9 - Arabidopsis tha...   211   1e-69
ref|NP_564004.1|  Expressed protein; protein id: At1g16705.1...   257   1e-67
pir||T01055  hypothetical protein YUP8H12R.38 - Arabidopsis ...   128   1e-28
ref|NP_565197.1|  expressed protein; protein id: At1g79000.1...   128   1e-28
ref|NP_173115.1|  unknown protein; protein id: At1g16710.1 [...   126   4e-28

>pir||D86302 hypothetical protein F17F16.9 - Arabidopsis
           thaliana|gi|9954735|gb|AAG09088.1|AC026237_9
           Hypothetical protein [Arabidopsis thaliana]
          Length = 238

 Score =  211 bits (537), Expect(2) = 1e-69
 Identities = 105/105 (100%), Positives = 105/105 (100%)
 Frame = +1

Query: 172 MDNDVFQIRRSMRDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYLNP 351
           MDNDVFQIRRSMRDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYLNP
Sbjct: 1   MDNDVFQIRRSMRDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYLNP 60

Query: 352 STLESRLTSLIKGRQLNKYKHQHADSSTLGTTITPTPGVSAEPTM 486
           STLESRLTSLIKGRQLNKYKHQHADSSTLGTTITPTPGVSAEPTM
Sbjct: 61  STLESRLTSLIKGRQLNKYKHQHADSSTLGTTITPTPGVSAEPTM 105




 Score = 74.7 bits (182), Expect(2) = 1e-69
 Identities = 38/45 (84%), Positives = 39/45 (86%)
 Frame = +2

Query: 548 LSHEDYQKVLFTTCLETFSLLMLQGKDDNIYNTNASAFSIATVLL 682
           +S E   KVLFTTCLETFSLLMLQGKDDNIYNTNASAFSIAT  L
Sbjct: 99  VSAEPTMKVLFTTCLETFSLLMLQGKDDNIYNTNASAFSIATRFL 143



>ref|NP_564004.1| Expressed protein; protein id: At1g16705.1, supported by cDNA:
           116789. [Arabidopsis
           thaliana]|gi|21618240|gb|AAM67290.1| unknown
           [Arabidopsis thaliana]
          Length = 128

 Score =  257 bits (656), Expect = 1e-67
 Identities = 128/128 (100%), Positives = 128/128 (100%)
 Frame = +1

Query: 172 MDNDVFQIRRSMRDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYLNP 351
           MDNDVFQIRRSMRDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYLNP
Sbjct: 1   MDNDVFQIRRSMRDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYLNP 60

Query: 352 STLESRLTSLIKGRQLNKYKHQHADSSTLGTTITPTPGVSAEPTMDNENRDQCETEIAEN 531
           STLESRLTSLIKGRQLNKYKHQHADSSTLGTTITPTPGVSAEPTMDNENRDQCETEIAEN
Sbjct: 61  STLESRLTSLIKGRQLNKYKHQHADSSTLGTTITPTPGVSAEPTMDNENRDQCETEIAEN 120

Query: 532 LKSVSLEP 555
           LKSVSLEP
Sbjct: 121 LKSVSLEP 128



>pir||T01055 hypothetical protein YUP8H12R.38 - Arabidopsis
           thaliana|gi|3152587|gb|AAC17068.1| Similar to
           CREB-binding protein homolog gb|U88570 from D.
           melanogaster and contains similarity to
           callus-associated protein gb|U01961 from Nicotiana
           tabacum.  EST gb|W43427 comes from this gene.
           [Arabidopsis thaliana]
          Length = 1516

 Score =  128 bits (321), Expect = 1e-28
 Identities = 61/102 (59%), Positives = 84/102 (81%)
 Frame = +1

Query: 163 LAPMDNDVFQIRRSMRDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEY 342
           ++P+DND+ ++R++MR  IF  L+++ P P D+ASK K++D A+RLEEGLFK+A TKE+Y
Sbjct: 41  VSPVDNDILKLRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDY 100

Query: 343 LNPSTLESRLTSLIKGRQLNKYKHQHADSSTLGTTITPTPGV 468
           +NPSTLE RL SLIKGRQLN Y  +HA+SS++GT I PTPG+
Sbjct: 101 VNPSTLEPRLASLIKGRQLNNYNQRHANSSSVGTMI-PTPGL 141



>ref|NP_565197.1| expressed protein; protein id: At1g79000.1, supported by cDNA:
           gi_12597460 [Arabidopsis
           thaliana]|gi|12597461|gb|AAG60059.1| p300/CBP
           acetyltransferase-related protein 2 [Arabidopsis
           thaliana]
          Length = 1654

 Score =  128 bits (321), Expect = 1e-28
 Identities = 61/102 (59%), Positives = 84/102 (81%)
 Frame = +1

Query: 163 LAPMDNDVFQIRRSMRDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEY 342
           ++P+DND+ ++R++MR  IF  L+++ P P D+ASK K++D A+RLEEGLFK+A TKE+Y
Sbjct: 41  VSPVDNDILKLRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDY 100

Query: 343 LNPSTLESRLTSLIKGRQLNKYKHQHADSSTLGTTITPTPGV 468
           +NPSTLE RL SLIKGRQLN Y  +HA+SS++GT I PTPG+
Sbjct: 101 VNPSTLEPRLASLIKGRQLNNYNQRHANSSSVGTMI-PTPGL 141



>ref|NP_173115.1| unknown protein; protein id: At1g16710.1 [Arabidopsis thaliana]
          Length = 1706

 Score =  126 bits (316), Expect = 4e-28
 Identities = 60/100 (60%), Positives = 82/100 (82%)
 Frame = +1

Query: 172 MDNDVFQIRRSMRDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYLNP 351
           MD+D+ ++R+ M+  +F  L++R P P D ASK K++D A+RLEEGLFKMA+TKE+Y+N 
Sbjct: 66  MDHDIMKLRQYMQTLVFNMLQQRQPSPADAASKAKYMDVARRLEEGLFKMAVTKEDYMNR 125

Query: 352 STLESRLTSLIKGRQLNKYKHQHADSSTLGTTITPTPGVS 471
           STLESR+TSLIKGRQ+N Y  +HA+SS++GT I PTPG+S
Sbjct: 126 STLESRITSLIKGRQINNYNQRHANSSSVGTMI-PTPGLS 164



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 121
effective length of database: 267,163,975
effective search space used: 37402956500
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)