BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 263956.f
         (546 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_568023.1|  Expressed protein; protein id: At4g37295.1...   174   8e-43
ref|NP_245437.1|  unknown [Pasteurella multocida]|gi|1272075...    32   4.8  
ref|XP_226879.1|  similar to 60S RIBOSOMAL PROTEIN L9 [Rattu...    31   8.3  

>ref|NP_568023.1| Expressed protein; protein id: At4g37295.1, supported by cDNA:
           263956. [Arabidopsis
           thaliana]|gi|21554774|gb|AAM63687.1| unknown
           [Arabidopsis thaliana]
          Length = 86

 Score =  174 bits (440), Expect = 8e-43
 Identities = 86/86 (100%), Positives = 86/86 (100%)
 Frame = +3

Query: 69  MRPVGLIFTVMFLVSAFSESRTADCRVLLGGSTEEIDQSKIHGVDLRSEDLLGVVIHGYK 248
           MRPVGLIFTVMFLVSAFSESRTADCRVLLGGSTEEIDQSKIHGVDLRSEDLLGVVIHGYK
Sbjct: 1   MRPVGLIFTVMFLVSAFSESRTADCRVLLGGSTEEIDQSKIHGVDLRSEDLLGVVIHGYK 60

Query: 249 KLRWLSSAGERMHTMASGPSRRGAGH 326
           KLRWLSSAGERMHTMASGPSRRGAGH
Sbjct: 61  KLRWLSSAGERMHTMASGPSRRGAGH 86



>ref|NP_245437.1| unknown [Pasteurella multocida]|gi|12720759|gb|AAK02584.1| unknown
           [Pasteurella multocida]
          Length = 171

 Score = 32.0 bits (71), Expect = 4.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 272 RGEDAYNGFRTEQERCWSLKYEPKQNIILRYLF 370
           R ED Y+ F  E     S KYEP +NI  +YL+
Sbjct: 59  RNEDEYSSFGFEGFETESNKYEPPENIFAQYLY 91



>ref|XP_226879.1| similar to 60S RIBOSOMAL PROTEIN L9 [Rattus norvegicus]
          Length = 478

 Score = 31.2 bits (69), Expect = 8.3
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 35  LNLKNRTTTPKN--ETGWLDLYGHVLGLGLFGIKNRGLQSSPWWFDGGNR 178
           + LK RT T K   ET W D     + L L G K + L+   WW   GNR
Sbjct: 122 ITLKGRTVTLKGPRETLWKDFNHISVELSLLGKKKKRLRVDKWW---GNR 168



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 115
effective length of database: 275,198,251
effective search space used: 18163084566
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)