BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 262289.f
         (524 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_189291.1|  integral membrane protein, putative; prote...   180   8e-45
emb|CAA66405.1|  orf04 [Arabidopsis thaliana]                     180   8e-45
ref|NP_198619.1|  putative transmembrane protein; protein id...   149   2e-35
gb|AAL06936.1|  AT5g38030/F16F17_30 [Arabidopsis thaliana]        149   2e-35
ref|NP_566795.1|  Expressed protein; protein id: At3g26595.1...   112   3e-24

>ref|NP_189291.1| integral membrane protein, putative; protein id: At3g26590.1,
           supported by cDNA: gi_16323120 [Arabidopsis
           thaliana]|gi|1402878|emb|CAA66809.1| unknown
           [Arabidopsis thaliana]|gi|9293938|dbj|BAB01841.1|
           emb|CAA66809.1~gene_id:MFE16.12~strong similarity to
           unknown protein [Arabidopsis
           thaliana]|gi|16323121|gb|AAL15295.1| AT3g26590/MFE16_11
           [Arabidopsis thaliana]|gi|25141209|gb|AAN73299.1|
           At3g26590/MFE16_11 [Arabidopsis thaliana]
          Length = 500

 Score =  180 bits (457), Expect = 8e-45
 Identities = 92/92 (100%), Positives = 92/92 (100%)
 Frame = -3

Query: 276 MAKDKDITETLLTAAEERSDLPFLSVDDIPPITTVGGFVREFNVETKKLWYLAGPAIFTS 97
           MAKDKDITETLLTAAEERSDLPFLSVDDIPPITTVGGFVREFNVETKKLWYLAGPAIFTS
Sbjct: 1   MAKDKDITETLLTAAEERSDLPFLSVDDIPPITTVGGFVREFNVETKKLWYLAGPAIFTS 60

Query: 96  VNQYSLGAITQVFAGHISTIALAAVSVENSVV 1
           VNQYSLGAITQVFAGHISTIALAAVSVENSVV
Sbjct: 61  VNQYSLGAITQVFAGHISTIALAAVSVENSVV 92



>emb|CAA66405.1| orf04 [Arabidopsis thaliana]
          Length = 446

 Score =  180 bits (457), Expect = 8e-45
 Identities = 92/92 (100%), Positives = 92/92 (100%)
 Frame = -3

Query: 276 MAKDKDITETLLTAAEERSDLPFLSVDDIPPITTVGGFVREFNVETKKLWYLAGPAIFTS 97
           MAKDKDITETLLTAAEERSDLPFLSVDDIPPITTVGGFVREFNVETKKLWYLAGPAIFTS
Sbjct: 1   MAKDKDITETLLTAAEERSDLPFLSVDDIPPITTVGGFVREFNVETKKLWYLAGPAIFTS 60

Query: 96  VNQYSLGAITQVFAGHISTIALAAVSVENSVV 1
           VNQYSLGAITQVFAGHISTIALAAVSVENSVV
Sbjct: 61  VNQYSLGAITQVFAGHISTIALAAVSVENSVV 92



>ref|NP_198619.1| putative transmembrane protein; protein id: At5g38030.1, supported
           by cDNA: gi_13937233 [Arabidopsis
           thaliana]|gi|8885605|dbj|BAA97535.1|
           emb|CAA66809.1~gene_id:F16F17.3~strong similarity to
           unknown protein [Arabidopsis
           thaliana]|gi|13937234|gb|AAK50109.1|AF372972_1
           AT5g38030/F16F17_30 [Arabidopsis
           thaliana]|gi|27363408|gb|AAO11623.1| At5g38030/F16F17_30
           [Arabidopsis thaliana]
          Length = 498

 Score =  149 bits (376), Expect = 2e-35
 Identities = 75/92 (81%), Positives = 82/92 (88%)
 Frame = -3

Query: 276 MAKDKDITETLLTAAEERSDLPFLSVDDIPPITTVGGFVREFNVETKKLWYLAGPAIFTS 97
           M +DK +TETLL+AAEE   LPF SV+DIPPITTVGGFV+EFNVE KKLWYLAGPAIF S
Sbjct: 1   MEEDKILTETLLSAAEEPPALPFSSVEDIPPITTVGGFVKEFNVEVKKLWYLAGPAIFMS 60

Query: 96  VNQYSLGAITQVFAGHISTIALAAVSVENSVV 1
           + QYSLGA TQVFAGHISTIALAAVSVENSV+
Sbjct: 61  ITQYSLGAATQVFAGHISTIALAAVSVENSVI 92



>gb|AAL06936.1| AT5g38030/F16F17_30 [Arabidopsis thaliana]
          Length = 292

 Score =  149 bits (376), Expect = 2e-35
 Identities = 75/92 (81%), Positives = 82/92 (88%)
 Frame = -3

Query: 276 MAKDKDITETLLTAAEERSDLPFLSVDDIPPITTVGGFVREFNVETKKLWYLAGPAIFTS 97
           M +DK +TETLL+AAEE   LPF SV+DIPPITTVGGFV+EFNVE KKLWYLAGPAIF S
Sbjct: 1   MEEDKILTETLLSAAEEPPALPFSSVEDIPPITTVGGFVKEFNVEVKKLWYLAGPAIFMS 60

Query: 96  VNQYSLGAITQVFAGHISTIALAAVSVENSVV 1
           + QYSLGA TQVFAGHISTIALAAVSVENSV+
Sbjct: 61  ITQYSLGAATQVFAGHISTIALAAVSVENSVI 92



>ref|NP_566795.1| Expressed protein; protein id: At3g26595.1, supported by cDNA:
           262289. [Arabidopsis
           thaliana]|gi|21554725|gb|AAM63671.1| unknown
           [Arabidopsis thaliana]
          Length = 75

 Score =  112 bits (280), Expect = 3e-24
 Identities = 57/75 (76%), Positives = 57/75 (76%)
 Frame = +2

Query: 107 MAGPAKYHSFLVSTLNSLTKPPTVVIGGISSTDKKGXXXXXXXXXXXXXXXXXXFAILRE 286
           MAGPAKYHSFLVSTLNSLTKPPTVVIGGISSTDKKG                  FAILRE
Sbjct: 1   MAGPAKYHSFLVSTLNSLTKPPTVVIGGISSTDKKGRSERSSAAVRSVSVISLSFAILRE 60

Query: 287 RDGEIKGGRRLRTNE 331
           RDGEIKGGRRLRTNE
Sbjct: 61  RDGEIKGGRRLRTNE 75



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 115
effective length of database: 275,198,251
effective search space used: 16236696809
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)