BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 256622.f
         (627 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM67319.1|  unknown [Arabidopsis thaliana]                    149   3e-35
ref|NP_126646.1|  transcriptional regulatory protein, AsnC f...    32   5.1  

>gb|AAM67319.1| unknown [Arabidopsis thaliana]
          Length = 76

 Score =  149 bits (376), Expect = 3e-35
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 124 MLFVLFVQIYGVELCVIGVKRLMRKLHYVSKAMSNYSDIVFNAKVQKERAVKSASGQTTV 303
           MLFVLFVQIYGVELCVIGVKRLMRKLHYVSKAMSNYSDIVFNAKVQKERAVKSASGQTTV
Sbjct: 1   MLFVLFVQIYGVELCVIGVKRLMRKLHYVSKAMSNYSDIVFNAKVQKERAVKSASGQTTV 60

Query: 304 GIDPQVKRIDSSAFSY 351
           GIDPQVKRIDSSAFSY
Sbjct: 61  GIDPQVKRIDSSAFSY 76




 Score = 35.0 bits (79), Expect = 0.78
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +1

Query: 487 SRMRKGIAVNSVSGQTTVGIDPQLLRFFS 573
           ++++K  AV S SGQTTVGIDPQ+ R  S
Sbjct: 43  AKVQKERAVKSASGQTTVGIDPQVKRIDS 71



>ref|NP_126646.1| transcriptional regulatory protein, AsnC family [Pyrococcus
           abyssi]|gi|18203528|sp|Q9V029|REG4_PYRAB Putative
           transcriptional regulator PAB0652|gi|7521754|pir||H75071
           transcription regulatory protein, asnc family PAB0652 -
           Pyrococcus abyssi (strain
           Orsay)|gi|5458389|emb|CAB49877.1| Transcriptional
           regulatory protein, Lrp-AsnC family [Pyrococcus abyssi]
          Length = 162

 Score = 32.3 bits (72), Expect = 5.1
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 187 LMRKLHYVSKAMSNYSDIVFNAKVQKERAVKSASGQT 297
           L R + YV+K +S +S+++F AK  KE+ V    G++
Sbjct: 84  LERYIEYVTKTLSGFSEVLFVAKSGKEKIVALVGGES 120



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 117
effective length of database: 272,520,159
effective search space used: 24799334469
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)