BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 23872.f
         (763 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_173168.1|  leucine rich repeat protein family; protei...   354   6e-97
gb|AAL99365.1|  leucine-rich receptor-like protein kinase [D...   296   2e-79
ref|NP_173167.1|  leucine rich repeat protein family; protei...   223   3e-57
ref|NP_177374.1|  leucine-rich repeat transmembrane protein ...   207   2e-52
gb|AAL99366.1|  leucine-rich receptor-like protein kinase [D...   184   1e-45
>ref|NP_173168.1| leucine rich repeat protein family; protein id: At1g17250.1
           [Arabidopsis thaliana]|gi|25402815|pir||G86308 Similar
           to disease resistance proteins [imported] - Arabidopsis
           thaliana|gi|5734745|gb|AAD50010.1|AC007651_5 Similar to
           disease resistance proteins [Arabidopsis thaliana]
          Length = 756

 Score =  354 bits (909), Expect = 6e-97
 Identities = 179/195 (91%), Positives = 179/195 (91%)
 Frame = -1

Query: 586 MTNEGRFKAKGFVRTSSTTRPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESL 407
           MTNEGRFKAKGFVRTSSTTRPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESL
Sbjct: 1   MTNEGRFKAKGFVRTSSTTRPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESL 60

Query: 406 LWFSGNVSSSVSPLNWNPSIDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSVXXXX 227
           LWFSGNVSSSVSPLNWNPSIDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSV    
Sbjct: 61  LWFSGNVSSSVSPLNWNPSIDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSVLRLH 120

Query: 226 XXXXXXXXXXXXSGHLPSGFLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIV 47
                       SGHLPSGFLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIV
Sbjct: 121 HLSQLNLSHNRLSGHLPSGFLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIV 180

Query: 46  DLSSNFLQGEILPSS 2
           DLSSNFLQGEILPSS
Sbjct: 181 DLSSNFLQGEILPSS 195

 Score = 36.2 bits (82), Expect = 0.50
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -1

Query: 187 GHLPSGFLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIVDLSSNFLQGEI 14
           G +PS    +  QL  LD SYN   G +P       G  RC  + ++    N + GEI
Sbjct: 216 GSIPSFMCKSSPQLSKLDFSYNDFTGNIP------QGLGRCLKLSVLQAGFNNISGEI 267
>gb|AAL99365.1| leucine-rich receptor-like protein kinase [Daucus carota]
          Length = 769

 Score =  296 bits (759), Expect = 2e-79
 Identities = 161/198 (81%), Positives = 163/198 (82%), Gaps = 3/198 (1%)
 Frame = -1

Query: 586 MTNEGRFKAKGFVRTSSTTRPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESL 407
           MTNEG FKAKGFVRTSSTTRPIQAL FHMIGILLQ VLFISVLSIAVSEALCNSQDRES+
Sbjct: 1   MTNEGFFKAKGFVRTSSTTRPIQALVFHMIGILLQ-VLFISVLSIAVSEALCNSQDRESM 59

Query: 406 LWFSGNVSSSVSPLNWNPSIDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSVXXXX 227
           L FSGNVS SVSPL WNPSIDCCSWEGI+CDDSPDSHITAISLPFRA YG LPLSV    
Sbjct: 60  LMFSGNVSCSVSPLLWNPSIDCCSWEGISCDDSPDSHITAISLPFRAAYGHLPLSVLRLH 119

Query: 226 XXXXXXXXXXXXSGHLPSGFLSALDQLKVLD---LSYNSLDGELPVEQTFRNGSNRCFPI 56
                       SGHLPSGFL ALDQLKVLD   LSYNSLDGE PVEQTFRNGSNRCFP 
Sbjct: 120 HLSQNNLSHNRLSGHLPSGFLVALDQLKVLDPLVLSYNSLDGEHPVEQTFRNGSNRCFPY 179

Query: 55  RIVDLSSNFLQGEILPSS 2
           RIVDL   FL GE LPSS
Sbjct: 180 RIVDL---FLHGERLPSS 194
>ref|NP_173167.1| leucine rich repeat protein family; protein id: At1g17240.1
           [Arabidopsis thaliana]|gi|25402813|pir||F86308 Similar
           to disease resistance proteins [imported] - Arabidopsis
           thaliana|gi|5734761|gb|AAD50026.1|AC007651_21 Similar to
           disease resistance proteins [Arabidopsis thaliana]
          Length = 729

 Score =  223 bits (567), Expect = 3e-57
 Identities = 118/190 (62%), Positives = 135/190 (70%)
 Frame = -1

Query: 571 RFKAKGFVRTSSTTRPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESLLWFSG 392
           R KAKG VR    T+P+Q LS HM  + L C+LF+S L + +SEA+CN QDRESL+WFSG
Sbjct: 2   RSKAKGLVRPL-ITKPVQPLSSHM-HLFLLCILFLSALFLTLSEAVCNLQDRESLIWFSG 59

Query: 391 NVSSSVSPLNWNPSIDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSVXXXXXXXXX 212
           NVSSSVSPLNWN SIDCCSWEGITCDDS DSH+T ISLP R L G L  SV         
Sbjct: 60  NVSSSVSPLNWNLSIDCCSWEGITCDDSSDSHVTVISLPSRGLSGTLASSVQNIHRLSRL 119

Query: 211 XXXXXXXSGHLPSGFLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIVDLSSN 32
                  SG LP GF S LDQL +L+LSYNS +GELP+EQ F N SNR F I+ +DLSSN
Sbjct: 120 DLSYNRLSGPLPPGFFSTLDQLMILNLSYNSFNGELPLEQAFGNESNRFFSIQTLDLSSN 179

Query: 31  FLQGEILPSS 2
            L+GEIL SS
Sbjct: 180 LLEGEILRSS 189

 Score = 36.2 bits (82), Expect = 0.50
 Identities = 29/98 (29%), Positives = 40/98 (40%)
 Frame = -1

Query: 301 SHITAISLPFRALYGKLPLSVXXXXXXXXXXXXXXXXSGHLPSGFLSALDQLKVLDLSYN 122
           S + ++ L    + G +PLS+                 G L     S L  LKVLDL  N
Sbjct: 317 SSLRSLQLHINNINGTVPLSLANCTKLVKLNLRVNQLGGGLTELEFSQLQSLKVLDLGNN 376

Query: 121 SLDGELPVEQTFRNGSNRCFPIRIVDLSSNFLQGEILP 8
           S  G LP ++ F      C  +  +  + N L GEI P
Sbjct: 377 SFTGALP-DKIF-----SCKSLTAIRFAGNKLTGEISP 408
>ref|NP_177374.1| leucine-rich repeat transmembrane protein kinase, putative; protein
           id: At1g72300.1, supported by cDNA: gi_19423987
           [Arabidopsis thaliana]|gi|25406161|pir||G96746
           hypothetical protein T9N14.20 [imported] - Arabidopsis
           thaliana|gi|12323670|gb|AAG51803.1|AC067754_19
           leucine-rich receptor-like protein kinase, putative;
           84911-81624 [Arabidopsis
           thaliana]|gi|19423988|gb|AAL87278.1| putative
           leucine-rich receptor protein kinase [Arabidopsis
           thaliana]|gi|22136976|gb|AAM91717.1| putative
           leucine-rich receptor protein kinase [Arabidopsis
           thaliana]
          Length = 1095

 Score =  207 bits (526), Expect = 2e-52
 Identities = 108/176 (61%), Positives = 126/176 (71%)
 Frame = -1

Query: 529 RPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESLLWFSGNVSSSVSPLNWNPS 350
           R ++ LS HM+  +L  VL ISV  + VSEA+CN QDR+SLLWFSGNVSS VSPL+WN S
Sbjct: 16  RQVKPLSPHMVLFVLLYVLSISVFFLTVSEAVCNLQDRDSLLWFSGNVSSPVSPLHWNSS 75

Query: 349 IDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSVXXXXXXXXXXXXXXXXSGHLPSG 170
           IDCCSWEGI+CD SP++ +T+I L  R L G LP SV                SG LP G
Sbjct: 76  IDCCSWEGISCDKSPENRVTSIILSSRGLSGNLPSSVLDLQRLSRLDLSHNRLSGPLPPG 135

Query: 169 FLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIVDLSSNFLQGEILPSS 2
           FLSALDQL VLDLSYNS  GELP++Q+F NGSN  FPI+ VDLSSN L+GEIL SS
Sbjct: 136 FLSALDQLLVLDLSYNSFKGELPLQQSFGNGSNGIFPIQTVDLSSNLLEGEILSSS 191

 Score = 34.3 bits (77), Expect = 1.9
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -1

Query: 187 GHLPSGFLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIVDLSSNFLQGEI 14
           G +PS   +A  QL  LD SYN   G+L  E       +RC  + ++    N L GEI
Sbjct: 212 GSIPSFMCTASPQLTKLDFSYNDFSGDLSQE------LSRCSRLSVLRAGFNNLSGEI 263
>gb|AAL99366.1| leucine-rich receptor-like protein kinase [Daucus carota]
          Length = 732

 Score =  184 bits (466), Expect = 1e-45
 Identities = 106/190 (55%), Positives = 121/190 (62%), Gaps = 3/190 (1%)
 Frame = -1

Query: 562 AKGFVRTSSTTRPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESLLWFSGNVS 383
           AKG VR    T+P+Q LS H   +   C+LF+S L + +SEA+CN QDRE L+WFSG VS
Sbjct: 5   AKGLVRPL-ITKPVQPLSSHR-NLFDNCILFLSALFLTLSEAVCNLQDREFLIWFSGCVS 62

Query: 382 SSVSPLNWNPSIDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSVXXXXXXXXXXXX 203
           SSVS  NWN SIDCCSW  ITCDDS DSH+T ISLP R L G L  SV            
Sbjct: 63  SSVSHGNWNLSIDCCSWAQITCDDSSDSHVTVISLPSRDLSGTLASSVQNIHRLSLLDLS 122

Query: 202 XXXXSGHLPSGFLSALDQLKVLDLSYNSLDG---ELPVEQTFRNGSNRCFPIRIVDLSSN 32
               SG +P GFLS LDQL  L+LSYN  +G   ELP EQ F N SNR F I  + LSSN
Sbjct: 123 YNRLSGPVPPGFLSTLDQLMSLNLSYNKFNGERYELPHEQAFGNESNRFFSIHTLMLSSN 182

Query: 31  FLQGEILPSS 2
            L+GEIL SS
Sbjct: 183 LLEGEILDSS 192
  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 120
effective length of database: 268,503,021
effective search space used: 35710901793
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results