BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 23872.f
(763 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173168.1| leucine rich repeat protein family; protei... 354 6e-97
gb|AAL99365.1| leucine-rich receptor-like protein kinase [D... 296 2e-79
ref|NP_173167.1| leucine rich repeat protein family; protei... 223 3e-57
ref|NP_177374.1| leucine-rich repeat transmembrane protein ... 207 2e-52
gb|AAL99366.1| leucine-rich receptor-like protein kinase [D... 184 1e-45
>ref|NP_173168.1| leucine rich repeat protein family; protein id: At1g17250.1
[Arabidopsis thaliana]|gi|25402815|pir||G86308 Similar
to disease resistance proteins [imported] - Arabidopsis
thaliana|gi|5734745|gb|AAD50010.1|AC007651_5 Similar to
disease resistance proteins [Arabidopsis thaliana]
Length = 756
Score = 354 bits (909), Expect = 6e-97
Identities = 179/195 (91%), Positives = 179/195 (91%)
Frame = -1
Query: 586 MTNEGRFKAKGFVRTSSTTRPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESL 407
MTNEGRFKAKGFVRTSSTTRPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESL
Sbjct: 1 MTNEGRFKAKGFVRTSSTTRPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESL 60
Query: 406 LWFSGNVSSSVSPLNWNPSIDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSVXXXX 227
LWFSGNVSSSVSPLNWNPSIDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSV
Sbjct: 61 LWFSGNVSSSVSPLNWNPSIDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSVLRLH 120
Query: 226 XXXXXXXXXXXXSGHLPSGFLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIV 47
SGHLPSGFLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIV
Sbjct: 121 HLSQLNLSHNRLSGHLPSGFLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIV 180
Query: 46 DLSSNFLQGEILPSS 2
DLSSNFLQGEILPSS
Sbjct: 181 DLSSNFLQGEILPSS 195
Score = 36.2 bits (82), Expect = 0.50
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -1
Query: 187 GHLPSGFLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIVDLSSNFLQGEI 14
G +PS + QL LD SYN G +P G RC + ++ N + GEI
Sbjct: 216 GSIPSFMCKSSPQLSKLDFSYNDFTGNIP------QGLGRCLKLSVLQAGFNNISGEI 267
>gb|AAL99365.1| leucine-rich receptor-like protein kinase [Daucus carota]
Length = 769
Score = 296 bits (759), Expect = 2e-79
Identities = 161/198 (81%), Positives = 163/198 (82%), Gaps = 3/198 (1%)
Frame = -1
Query: 586 MTNEGRFKAKGFVRTSSTTRPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESL 407
MTNEG FKAKGFVRTSSTTRPIQAL FHMIGILLQ VLFISVLSIAVSEALCNSQDRES+
Sbjct: 1 MTNEGFFKAKGFVRTSSTTRPIQALVFHMIGILLQ-VLFISVLSIAVSEALCNSQDRESM 59
Query: 406 LWFSGNVSSSVSPLNWNPSIDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSVXXXX 227
L FSGNVS SVSPL WNPSIDCCSWEGI+CDDSPDSHITAISLPFRA YG LPLSV
Sbjct: 60 LMFSGNVSCSVSPLLWNPSIDCCSWEGISCDDSPDSHITAISLPFRAAYGHLPLSVLRLH 119
Query: 226 XXXXXXXXXXXXSGHLPSGFLSALDQLKVLD---LSYNSLDGELPVEQTFRNGSNRCFPI 56
SGHLPSGFL ALDQLKVLD LSYNSLDGE PVEQTFRNGSNRCFP
Sbjct: 120 HLSQNNLSHNRLSGHLPSGFLVALDQLKVLDPLVLSYNSLDGEHPVEQTFRNGSNRCFPY 179
Query: 55 RIVDLSSNFLQGEILPSS 2
RIVDL FL GE LPSS
Sbjct: 180 RIVDL---FLHGERLPSS 194
>ref|NP_173167.1| leucine rich repeat protein family; protein id: At1g17240.1
[Arabidopsis thaliana]|gi|25402813|pir||F86308 Similar
to disease resistance proteins [imported] - Arabidopsis
thaliana|gi|5734761|gb|AAD50026.1|AC007651_21 Similar to
disease resistance proteins [Arabidopsis thaliana]
Length = 729
Score = 223 bits (567), Expect = 3e-57
Identities = 118/190 (62%), Positives = 135/190 (70%)
Frame = -1
Query: 571 RFKAKGFVRTSSTTRPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESLLWFSG 392
R KAKG VR T+P+Q LS HM + L C+LF+S L + +SEA+CN QDRESL+WFSG
Sbjct: 2 RSKAKGLVRPL-ITKPVQPLSSHM-HLFLLCILFLSALFLTLSEAVCNLQDRESLIWFSG 59
Query: 391 NVSSSVSPLNWNPSIDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSVXXXXXXXXX 212
NVSSSVSPLNWN SIDCCSWEGITCDDS DSH+T ISLP R L G L SV
Sbjct: 60 NVSSSVSPLNWNLSIDCCSWEGITCDDSSDSHVTVISLPSRGLSGTLASSVQNIHRLSRL 119
Query: 211 XXXXXXXSGHLPSGFLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIVDLSSN 32
SG LP GF S LDQL +L+LSYNS +GELP+EQ F N SNR F I+ +DLSSN
Sbjct: 120 DLSYNRLSGPLPPGFFSTLDQLMILNLSYNSFNGELPLEQAFGNESNRFFSIQTLDLSSN 179
Query: 31 FLQGEILPSS 2
L+GEIL SS
Sbjct: 180 LLEGEILRSS 189
Score = 36.2 bits (82), Expect = 0.50
Identities = 29/98 (29%), Positives = 40/98 (40%)
Frame = -1
Query: 301 SHITAISLPFRALYGKLPLSVXXXXXXXXXXXXXXXXSGHLPSGFLSALDQLKVLDLSYN 122
S + ++ L + G +PLS+ G L S L LKVLDL N
Sbjct: 317 SSLRSLQLHINNINGTVPLSLANCTKLVKLNLRVNQLGGGLTELEFSQLQSLKVLDLGNN 376
Query: 121 SLDGELPVEQTFRNGSNRCFPIRIVDLSSNFLQGEILP 8
S G LP ++ F C + + + N L GEI P
Sbjct: 377 SFTGALP-DKIF-----SCKSLTAIRFAGNKLTGEISP 408
>ref|NP_177374.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g72300.1, supported by cDNA: gi_19423987
[Arabidopsis thaliana]|gi|25406161|pir||G96746
hypothetical protein T9N14.20 [imported] - Arabidopsis
thaliana|gi|12323670|gb|AAG51803.1|AC067754_19
leucine-rich receptor-like protein kinase, putative;
84911-81624 [Arabidopsis
thaliana]|gi|19423988|gb|AAL87278.1| putative
leucine-rich receptor protein kinase [Arabidopsis
thaliana]|gi|22136976|gb|AAM91717.1| putative
leucine-rich receptor protein kinase [Arabidopsis
thaliana]
Length = 1095
Score = 207 bits (526), Expect = 2e-52
Identities = 108/176 (61%), Positives = 126/176 (71%)
Frame = -1
Query: 529 RPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESLLWFSGNVSSSVSPLNWNPS 350
R ++ LS HM+ +L VL ISV + VSEA+CN QDR+SLLWFSGNVSS VSPL+WN S
Sbjct: 16 RQVKPLSPHMVLFVLLYVLSISVFFLTVSEAVCNLQDRDSLLWFSGNVSSPVSPLHWNSS 75
Query: 349 IDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSVXXXXXXXXXXXXXXXXSGHLPSG 170
IDCCSWEGI+CD SP++ +T+I L R L G LP SV SG LP G
Sbjct: 76 IDCCSWEGISCDKSPENRVTSIILSSRGLSGNLPSSVLDLQRLSRLDLSHNRLSGPLPPG 135
Query: 169 FLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIVDLSSNFLQGEILPSS 2
FLSALDQL VLDLSYNS GELP++Q+F NGSN FPI+ VDLSSN L+GEIL SS
Sbjct: 136 FLSALDQLLVLDLSYNSFKGELPLQQSFGNGSNGIFPIQTVDLSSNLLEGEILSSS 191
Score = 34.3 bits (77), Expect = 1.9
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = -1
Query: 187 GHLPSGFLSALDQLKVLDLSYNSLDGELPVEQTFRNGSNRCFPIRIVDLSSNFLQGEI 14
G +PS +A QL LD SYN G+L E +RC + ++ N L GEI
Sbjct: 212 GSIPSFMCTASPQLTKLDFSYNDFSGDLSQE------LSRCSRLSVLRAGFNNLSGEI 263
>gb|AAL99366.1| leucine-rich receptor-like protein kinase [Daucus carota]
Length = 732
Score = 184 bits (466), Expect = 1e-45
Identities = 106/190 (55%), Positives = 121/190 (62%), Gaps = 3/190 (1%)
Frame = -1
Query: 562 AKGFVRTSSTTRPIQALSFHMIGILLQCVLFISVLSIAVSEALCNSQDRESLLWFSGNVS 383
AKG VR T+P+Q LS H + C+LF+S L + +SEA+CN QDRE L+WFSG VS
Sbjct: 5 AKGLVRPL-ITKPVQPLSSHR-NLFDNCILFLSALFLTLSEAVCNLQDREFLIWFSGCVS 62
Query: 382 SSVSPLNWNPSIDCCSWEGITCDDSPDSHITAISLPFRALYGKLPLSVXXXXXXXXXXXX 203
SSVS NWN SIDCCSW ITCDDS DSH+T ISLP R L G L SV
Sbjct: 63 SSVSHGNWNLSIDCCSWAQITCDDSSDSHVTVISLPSRDLSGTLASSVQNIHRLSLLDLS 122
Query: 202 XXXXSGHLPSGFLSALDQLKVLDLSYNSLDG---ELPVEQTFRNGSNRCFPIRIVDLSSN 32
SG +P GFLS LDQL L+LSYN +G ELP EQ F N SNR F I + LSSN
Sbjct: 123 YNRLSGPVPPGFLSTLDQLMSLNLSYNKFNGERYELPHEQAFGNESNRFFSIHTLMLSSN 182
Query: 31 FLQGEILPSS 2
L+GEIL SS
Sbjct: 183 LLEGEILDSS 192
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 120
effective length of database: 268,503,021
effective search space used: 35710901793
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)