BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 22839.f
         (497 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_200123.1|  putative protein; protein id: At5g53110.1 ...   209   1e-53
gb|AAM64313.1|  unknown [Arabidopsis thaliana]                     90   1e-17
ref|NP_671966.1|  similar to RING zinc finger protein, putat...    83   1e-15
ref|NP_565593.1|  similar to RING zinc finger protein, putat...    82   2e-15
ref|NP_174125.1|  RING zinc finger protein, putative; protei...    62   3e-09

>ref|NP_200123.1| putative protein; protein id: At5g53110.1 [Arabidopsis
           thaliana]|gi|9757992|dbj|BAB08414.1|
           gb|AAF25996.1~gene_id:MFH8.3~similar to unknown protein
           [Arabidopsis thaliana]
          Length = 240

 Score =  209 bits (533), Expect = 1e-53
 Identities = 97/99 (97%), Positives = 98/99 (98%)
 Frame = -2

Query: 298 NAVCRRDGPIIRFPFRLKRQQSHSCGYDKGFDLTCDINAGNRTTITLPFSGNFTVEEIDY 119
           NAVCRRDGPIIRFPFRLK QQSHSCGYDKGFDLTCDINAGNRTTITLPFSGNFTVEEIDY
Sbjct: 32  NAVCRRDGPIIRFPFRLKHQQSHSCGYDKGFDLTCDINAGNRTTITLPFSGNFTVEEIDY 91

Query: 118 AAQEIWINDPNNCLPQRILELNLNSTPFSGVYMRQFTFF 2
           AAQEIWINDPNNCLPQRIL+LNLNSTPFSGVYMRQFTFF
Sbjct: 92  AAQEIWINDPNNCLPQRILQLNLNSTPFSGVYMRQFTFF 130



>gb|AAM64313.1| unknown [Arabidopsis thaliana]
          Length = 59

 Score = 90.1 bits (222), Expect = 1e-17
 Identities = 47/59 (79%), Positives = 47/59 (79%)
 Frame = +3

Query: 267 MIGPSRRQTALXXXXXXXXXXXXGIRRDRNKRENDIIFVKSIFLFGLVLETKAVTKPFL 443
           MIGPSRRQTAL            GIRRDRNKRENDIIFVKSIFLFGLVLETKAVTKPFL
Sbjct: 1   MIGPSRRQTALVHVTVEVVVVVVGIRRDRNKRENDIIFVKSIFLFGLVLETKAVTKPFL 59



>ref|NP_671966.1| similar to RING zinc finger protein, putative; protein id:
           At2g46495.1 [Arabidopsis thaliana]
          Length = 878

 Score = 83.2 bits (204), Expect = 1e-15
 Identities = 41/95 (43%), Positives = 60/95 (63%)
 Frame = -2

Query: 289 CRRDGPIIRFPFRLKRQQSHSCGYDKGFDLTCDINAGNRTTITLPFSGNFTVEEIDYAAQ 110
           C RD   +RFPF L  +Q   CG+  GF+L C   A  +T + LP SG F V EIDY +Q
Sbjct: 31  CGRDDVHVRFPFWLLSKQPELCGH-AGFNLQC--TASPKTALKLPNSGTFLVREIDYLSQ 87

Query: 109 EIWINDPNNCLPQRILELNLNSTPFSGVYMRQFTF 5
           +I + DP NCL +++L  +++ +PFS +Y+  +TF
Sbjct: 88  QIRLYDPENCLARKLLTFDISRSPFSALYLVSYTF 122




 Score = 66.2 bits (160), Expect = 2e-10
 Identities = 40/96 (41%), Positives = 54/96 (55%), Gaps = 3/96 (3%)
 Frame = -2

Query: 283 RDGPI---IRFPFRLKRQQSHSCGYDKGFDLTCDINAGNRTTITLPFSGNFTVEEIDYAA 113
           R GP+   IRFPF         C +   F+L C     N T + LP SG F V+ IDY  
Sbjct: 337 RCGPLEVPIRFPF---------CDHPL-FNLLC--TNLNNTVLQLPMSGTFFVQYIDYRK 384

Query: 112 QEIWINDPNNCLPQRILELNLNSTPFSGVYMRQFTF 5
           Q+I+INDP NCL +R+L  N++ +PFS  +   +TF
Sbjct: 385 QQIYINDPENCLAKRLLTFNISGSPFSPRFDTLYTF 420



>ref|NP_565593.1| similar to RING zinc finger protein, putative; protein id:
           At2g25410.1 [Arabidopsis
           thaliana]|gi|20197745|gb|AAD20701.2| predicted protein
           [Arabidopsis thaliana]
          Length = 377

 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 43/95 (45%), Positives = 58/95 (60%)
 Frame = -2

Query: 289 CRRDGPIIRFPFRLKRQQSHSCGYDKGFDLTCDINAGNRTTITLPFSGNFTVEEIDYAAQ 110
           C ++  + RFPF L   Q  SCGY  GF+L C  +A   TT+ LP S  F V+EIDY  Q
Sbjct: 34  CSQESVVARFPFSLFSYQPESCGYS-GFNLICKDDAN--TTLKLPKSEPFLVKEIDYETQ 90

Query: 109 EIWINDPNNCLPQRILELNLNSTPFSGVYMRQFTF 5
            I +NDP NCL +R+L  + + +PFS +  R +TF
Sbjct: 91  RIRLNDPENCLARRLLNFDPSGSPFSFLRSRNYTF 125



>ref|NP_174125.1| RING zinc finger protein, putative; protein id: At1g28040.1
           [Arabidopsis thaliana]|gi|25403049|pir||A86406 probable
           RING zinc finger protein [imported] - Arabidopsis
           thaliana|gi|12322996|gb|AAG51486.1|AC069471_17 RING zinc
           finger protein, putative [Arabidopsis thaliana]
          Length = 336

 Score = 62.4 bits (150), Expect = 3e-09
 Identities = 30/70 (42%), Positives = 46/70 (64%)
 Frame = -2

Query: 214 KGFDLTCDINAGNRTTITLPFSGNFTVEEIDYAAQEIWINDPNNCLPQRILELNLNSTPF 35
           +GF+L C  N  ++T + LP SG F V+EI+Y  Q+I I+DP NC+ +R+L  N + +PF
Sbjct: 38  EGFNLHC--NNLDKTVLELPMSGTFLVDEINYQKQQISISDPENCMVKRLLTFNTSGSPF 95

Query: 34  SGVYMRQFTF 5
           S  +   +TF
Sbjct: 96  SYGFSFYYTF 105



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 114
effective length of database: 276,537,297
effective search space used: 14103402147
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)