BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1860.f
         (711 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_564783.1|  Expressed protein; protein id: At1g61667.1...   295   4e-79
gb|AAM63037.1|  unknown [Arabidopsis thaliana]                    295   4e-79
dbj|BAC42043.1|  unknown protein [Arabidopsis thaliana]           149   4e-35
ref|NP_200264.1|  putative protein; protein id: At5g54530.1 ...   147   2e-34
gb|AAM61282.1|  unknown [Arabidopsis thaliana]                    112   6e-24

>ref|NP_564783.1| Expressed protein; protein id: At1g61667.1, supported by cDNA:
           1860. [Arabidopsis thaliana]
          Length = 156

 Score =  295 bits (755), Expect = 4e-79
 Identities = 146/146 (100%), Positives = 146/146 (100%)
 Frame = +3

Query: 45  VPFITPSSQSSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYF 224
           VPFITPSSQSSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYF
Sbjct: 11  VPFITPSSQSSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYF 70

Query: 225 DRVIKANLSYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFE 404
           DRVIKANLSYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFE
Sbjct: 71  DRVIKANLSYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFE 130

Query: 405 DPPVCYPPGSIMEKLEKSKMDIQLKR 482
           DPPVCYPPGSIMEKLEKSKMDIQLKR
Sbjct: 131 DPPVCYPPGSIMEKLEKSKMDIQLKR 156



>gb|AAM63037.1| unknown [Arabidopsis thaliana]
          Length = 157

 Score =  295 bits (755), Expect = 4e-79
 Identities = 146/146 (100%), Positives = 146/146 (100%)
 Frame = +3

Query: 45  VPFITPSSQSSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYF 224
           VPFITPSSQSSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYF
Sbjct: 12  VPFITPSSQSSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYF 71

Query: 225 DRVIKANLSYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFE 404
           DRVIKANLSYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFE
Sbjct: 72  DRVIKANLSYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFE 131

Query: 405 DPPVCYPPGSIMEKLEKSKMDIQLKR 482
           DPPVCYPPGSIMEKLEKSKMDIQLKR
Sbjct: 132 DPPVCYPPGSIMEKLEKSKMDIQLKR 157



>dbj|BAC42043.1| unknown protein [Arabidopsis thaliana]
          Length = 161

 Score =  149 bits (376), Expect = 4e-35
 Identities = 70/136 (51%), Positives = 99/136 (72%)
 Frame = +3

Query: 54  ITPSSQSSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYFDRV 233
           ++  S  ++ ++L + GLP GL P  V+SY L +  G LEV L  PC+A+FE  V+F+ V
Sbjct: 21  LSSPSYPTVHDVLRSEGLPAGLLPQEVDSYILHND-GRLEVFLAAPCYAKFETNVHFEAV 79

Query: 234 IKANLSYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFEDPP 413
           ++ NLSYG LVG+EGL+Q+ELFLWL VK I V +P+SG+++FDIGVA KQ+S SLFEDPP
Sbjct: 80  VRGNLSYGSLVGVEGLSQKELFLWLQVKDIVVENPNSGVIVFDIGVAFKQLSLSLFEDPP 139

Query: 414 VCYPPGSIMEKLEKSK 461
            C P G + +K+ + +
Sbjct: 140 KCKPDGVLKKKMRRDR 155



>ref|NP_200264.1| putative protein; protein id: At5g54530.1 [Arabidopsis
           thaliana]|gi|9758945|dbj|BAB09332.1|
           gb|AAF02153.1~gene_id:MRB17.3~similar to unknown protein
           [Arabidopsis thaliana]
          Length = 149

 Score =  147 bits (370), Expect = 2e-34
 Identities = 69/130 (53%), Positives = 96/130 (73%)
 Frame = +3

Query: 54  ITPSSQSSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYFDRV 233
           ++  S  ++ ++L + GLP GL P  V+SY L +  G LEV L  PC+A+FE  V+F+ V
Sbjct: 21  LSSPSYPTVHDVLRSEGLPAGLLPQEVDSYILHND-GRLEVFLAAPCYAKFETNVHFEAV 79

Query: 234 IKANLSYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFEDPP 413
           ++ NLSYG LVG+EGL+Q+ELFLWL VK I V +P+SG+++FDIGVA KQ+S SLFEDPP
Sbjct: 80  VRGNLSYGSLVGVEGLSQKELFLWLQVKDIVVENPNSGVIVFDIGVAFKQLSLSLFEDPP 139

Query: 414 VCYPPGSIME 443
            C P G+ ++
Sbjct: 140 KCKPDGNFLD 149



>gb|AAM61282.1| unknown [Arabidopsis thaliana]
          Length = 195

 Score =  112 bits (279), Expect = 6e-24
 Identities = 59/124 (47%), Positives = 76/124 (60%)
 Frame = +3

Query: 48  PFITPSSQSSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYFD 227
           P ++     S  + L    LP G+ P  V ++S+D KTG   V L  PC A+FEN+ +FD
Sbjct: 21  PQLSSLPDPSFYDYLRESNLPAGIVPKGVTNFSIDIKTGRFTVALPVPCDAKFENQFHFD 80

Query: 228 RVIKANLSYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFED 407
             I   LS G +  L G+TQ+ELFLW  VKGI V+  SSGL+ FD+GVA KQ+S SLFE 
Sbjct: 81  YNISGVLSDGRIGNLSGVTQKELFLWFAVKGIHVDPQSSGLIHFDVGVADKQLSLSLFES 140

Query: 408 PPVC 419
           P  C
Sbjct: 141 PRDC 144



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 119
effective length of database: 269,842,067
effective search space used: 31571521839
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)