BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 10836.f
         (562 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_565516.1|  Expressed protein; protein id: At2g21655.1...   305   2e-82
gb|AAM61015.1|  unknown [Arabidopsis thaliana]                    296   9e-80
dbj|BAB02111.1|  gb|AAF30345.1~gene_id:MIL15.15~similar to u...   251   4e-66
ref|NP_683520.1|  hypothetical protein; protein id: At3g0118...   110   9e-24
ref|NP_564494.1|  expressed protein; protein id: At1g45190.1...    71   8e-12

>ref|NP_565516.1| Expressed protein; protein id: At2g21655.1, supported by cDNA:
           10836. [Arabidopsis thaliana]|gi|20198097|gb|AAM15398.1|
           Expressed protein [Arabidopsis thaliana]
          Length = 156

 Score =  305 bits (782), Expect = 2e-82
 Identities = 149/150 (99%), Positives = 149/150 (99%)
 Frame = +3

Query: 66  FMIFSLIMVLLSFSHPTFGKESDNDKPLLISDDEFDAMMARSPTSDNYNENVGSKYSKKQ 245
           FMIFSLIMVLLSFSHPTFGKESDNDKPLLISDDEFDAMMARSPTSDNYNENVGSKYSKKQ
Sbjct: 7   FMIFSLIMVLLSFSHPTFGKESDNDKPLLISDDEFDAMMARSPTSDNYNENVGSKYSKKQ 66

Query: 246 INYLMNCSKKMAVPDKCIEEVMAEIIQNKSASRYCCLGIVKAGKECHMEYMKLFFQMYEL 425
           INYLMNCSKKMAVPDKCIEEVMAEIIQNKSASR CCLGIVKAGKECHMEYMKLFFQMYEL
Sbjct: 67  INYLMNCSKKMAVPDKCIEEVMAEIIQNKSASRDCCLGIVKAGKECHMEYMKLFFQMYEL 126

Query: 426 RRFTSKRFSKTNEIWNRCSTEIGVVSPYSG 515
           RRFTSKRFSKTNEIWNRCSTEIGVVSPYSG
Sbjct: 127 RRFTSKRFSKTNEIWNRCSTEIGVVSPYSG 156



>gb|AAM61015.1| unknown [Arabidopsis thaliana]
          Length = 143

 Score =  296 bits (759), Expect = 9e-80
 Identities = 143/143 (100%), Positives = 143/143 (100%)
 Frame = +3

Query: 87  MVLLSFSHPTFGKESDNDKPLLISDDEFDAMMARSPTSDNYNENVGSKYSKKQINYLMNC 266
           MVLLSFSHPTFGKESDNDKPLLISDDEFDAMMARSPTSDNYNENVGSKYSKKQINYLMNC
Sbjct: 1   MVLLSFSHPTFGKESDNDKPLLISDDEFDAMMARSPTSDNYNENVGSKYSKKQINYLMNC 60

Query: 267 SKKMAVPDKCIEEVMAEIIQNKSASRYCCLGIVKAGKECHMEYMKLFFQMYELRRFTSKR 446
           SKKMAVPDKCIEEVMAEIIQNKSASRYCCLGIVKAGKECHMEYMKLFFQMYELRRFTSKR
Sbjct: 61  SKKMAVPDKCIEEVMAEIIQNKSASRYCCLGIVKAGKECHMEYMKLFFQMYELRRFTSKR 120

Query: 447 FSKTNEIWNRCSTEIGVVSPYSG 515
           FSKTNEIWNRCSTEIGVVSPYSG
Sbjct: 121 FSKTNEIWNRCSTEIGVVSPYSG 143



>dbj|BAB02111.1| gb|AAF30345.1~gene_id:MIL15.15~similar to unknown protein
           [Arabidopsis thaliana]
          Length = 158

 Score =  251 bits (641), Expect = 4e-66
 Identities = 122/152 (80%), Positives = 134/152 (87%), Gaps = 2/152 (1%)
 Frame = +3

Query: 66  FMIFSLIMVLLSFSHPTFGKESDNDKPLLISDDEFDAMMARSPTSDNYNENVGSKYSKKQ 245
           FMIFS IM+LLSFSHPT  KE DNDK +LI DDEFDAM+ARSPT+++YNENVG KYSKKQ
Sbjct: 7   FMIFSSIMILLSFSHPTLAKEGDNDKQVLILDDEFDAMIARSPTAEDYNENVGRKYSKKQ 66

Query: 246 INYLMNCSKKMAVPD--KCIEEVMAEIIQNKSASRYCCLGIVKAGKECHMEYMKLFFQMY 419
             YL+NCS KM +PD  KCIEEV+AEIIQNKSASR CCLGIVKAGKECHMEYMKL FQ+Y
Sbjct: 67  KEYLLNCSIKMDIPDPDKCIEEVLAEIIQNKSASRDCCLGIVKAGKECHMEYMKLIFQIY 126

Query: 420 ELRRFTSKRFSKTNEIWNRCSTEIGVVSPYSG 515
           +L+RFTSKRFSKTNEIW RCST IG VSPYSG
Sbjct: 127 QLKRFTSKRFSKTNEIWKRCSTGIGAVSPYSG 158



>ref|NP_683520.1| hypothetical protein; protein id: At3g01185.1 [Arabidopsis
           thaliana]
          Length = 140

 Score =  110 bits (276), Expect = 9e-24
 Identities = 55/142 (38%), Positives = 88/142 (61%)
 Frame = +3

Query: 69  MIFSLIMVLLSFSHPTFGKESDNDKPLLISDDEFDAMMARSPTSDNYNENVGSKYSKKQI 248
           M F LI  L+ F++P+    +D++KPL+  + + D+  ARSP++  YN ++ +K S + +
Sbjct: 1   MAFVLITTLVLFAYPSL---ADDEKPLIDPNIDLDSTFARSPSTSEYNIDMLNKQSTELV 57

Query: 249 NYLMNCSKKMAVPDKCIEEVMAEIIQNKSASRYCCLGIVKAGKECHMEYMKLFFQMYELR 428
            +   C+  M   +KC ++VM+EI+QN   SRYCCL ++  G+ECHM    L FQ Y  +
Sbjct: 58  QFAGTCAGLMG-GEKCSDQVMSEILQNIPTSRYCCLKMIIYGQECHMVLRNLLFQTYYYK 116

Query: 429 RFTSKRFSKTNEIWNRCSTEIG 494
            F SK   +  ++WNRCS E+G
Sbjct: 117 PFASKGRPRILKVWNRCSAEVG 138



>ref|NP_564494.1| expressed protein; protein id: At1g45190.1 [Arabidopsis
           thaliana]|gi|22330065|ref|NP_683396.1| hypothetical
           protein; protein id: At1g45226.1 [Arabidopsis
           thaliana]|gi|25405889|pir||B96510 protein F27F5.27
           [imported] - Arabidopsis
           thaliana|gi|7767668|gb|AAF69165.1|AC007915_17 F27F5.27
           [Arabidopsis thaliana]
          Length = 172

 Score = 71.2 bits (173), Expect = 8e-12
 Identities = 38/112 (33%), Positives = 57/112 (49%), Gaps = 1/112 (0%)
 Frame = +3

Query: 162 DEFDAMMARSPTSDNYNENVGSKYSKKQINYLMNCSKKMAVPDKCIEEVMAEII-QNKSA 338
           DE     A SP  + Y+  +   YS KQ+ +L  CS+K +   KC  EV   ++ +    
Sbjct: 53  DEAPFEEADSPAME-YDRELAHHYSDKQLKFLEACSEKPS--SKCGNEVFKNMLNETMPI 109

Query: 339 SRYCCLGIVKAGKECHMEYMKLFFQMYELRRFTSKRFSKTNEIWNRCSTEIG 494
           +  CC  I+K GK+CH+  +KL F  YE +   SK   K+ + WN C   +G
Sbjct: 110 TEECCRDILKMGKDCHLGLVKLIFATYEYKNIASKGIPKSKQAWNECIRRVG 161



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 116
effective length of database: 273,859,205
effective search space used: 19170144350
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)