BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orf204.f
(615 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_085590.1| orf204 [Arabidopsis thaliana]|gi|1785791|e... 356 1e-97
ref|NP_085564.1| orf251 [Arabidopsis thaliana]|gi|1785766|e... 135 3e-31
ref|NP_671802.1| hypothetical protein; protein id: At2g0774... 128 5e-29
gb|AAO21337.1| RdRp-like protein [Sclerotinia homoeocarpa m... 97 2e-19
ref|NP_660176.1| RNA-dependent RNA polymerase [Ophiostoma m... 96 4e-19
>ref|NP_085590.1| orf204 [Arabidopsis thaliana]|gi|1785791|emb|CAA69788.1| orf204
[Arabidopsis thaliana]
Length = 204
Score = 356 bits (914), Expect = 1e-97
Identities = 176/204 (86%), Positives = 176/204 (86%)
Frame = +1
Query: 1 MFGGRRRRLPQDGTFNQTQPFDRLVGSRHSFSFDLKSATDRWPLVFLFEVVQYLFDRXXX 180
MFGGRRRRLPQDGTFNQTQPFDRLVGSRHSFSFDLKSATDRWPLVFLFEVVQYLFDR
Sbjct: 1 MFGGRRRRLPQDGTFNQTQPFDRLVGSRHSFSFDLKSATDRWPLVFLFEVVQYLFDRSFA 60
Query: 181 XXXXXXXXXCNIFEVPFVKLKRRFSQVCFVAGQPLGYHGSWPTFALSHHILVWWCAKQVH 360
CNIFEVPFVKLKRRFSQVCFVAGQPLGYHGSWPTFALSHHILVWWCAKQVH
Sbjct: 61 SSVVNSAFACNIFEVPFVKLKRRFSQVCFVAGQPLGYHGSWPTFALSHHILVWWCAKQVH 120
Query: 361 PGVRFTSYAVLGDDVVIADQEVAKVYESALGGLGVKISYQKSLIPIQXXXXXXXXXXXXX 540
PGVRFTSYAVLGDDVVIADQEVAKVYESALGGLGVKISYQKSLIPIQ
Sbjct: 121 PGVRFTSYAVLGDDVVIADQEVAKVYESALGGLGVKISYQKSLIPIQVLLSLLNASGLGN 180
Query: 541 XXXKREIFPRESGVLSLMSVPSLA 612
KREIFPRESGVLSLMSVPSLA
Sbjct: 181 LVLKREIFPRESGVLSLMSVPSLA 204
>ref|NP_085564.1| orf251 [Arabidopsis thaliana]|gi|1785766|emb|CAA69796.1| orf251
[Arabidopsis thaliana]
Length = 251
Score = 135 bits (341), Expect = 3e-31
Identities = 76/162 (46%), Positives = 96/162 (58%), Gaps = 4/162 (2%)
Frame = +1
Query: 19 RRLPQDGTFNQTQPFDRLVGSRHSF--SFDLKSATDRWPLVFLFEVVQYLFDRXXXXXXX 192
RR+PQDGTF+Q P RL R F SFDL +ATDRWP+ ++E++ LF +
Sbjct: 5 RRIPQDGTFHQEGPIHRLAKRRPRFIASFDLSAATDRWPVPVIYELMACLFGQTMASCIV 64
Query: 193 XXXXXCNIFEVPFVKLKRRFSQVCFVAGQPLGYHGSWPTFALSHHILVWWCAKQVHPGVR 372
N + V R +V FVAGQPLGY+GSW FALSHH +VW A + +P
Sbjct: 65 NGALALNSCSLKSVT--GRHDEVVFVAGQPLGYYGSWALFALSHHAIVWLAALRAYPHQT 122
Query: 373 --FTSYAVLGDDVVIADQEVAKVYESALGGLGVKISYQKSLI 492
F YA+LGDD+VIAD+ VAK Y S L L V IS KS++
Sbjct: 123 RPFLDYALLGDDIVIADRSVAKEYRSLLDALQVDISDAKSIV 164
>ref|NP_671802.1| hypothetical protein; protein id: At2g07749.1 [Arabidopsis
thaliana]
Length = 446
Score = 128 bits (322), Expect = 5e-29
Identities = 73/158 (46%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Frame = +1
Query: 31 QDGTFNQTQPFDRLVGSRHSF--SFDLKSATDRWPLVFLFEVVQYLFDRXXXXXXXXXXX 204
QDGTF+Q P RL R F SFDL +ATDRWP+ ++E++ LF +
Sbjct: 4 QDGTFHQEGPIHRLAKRRPRFIASFDLSAATDRWPVPVIYELMACLFGQTMASCIVNGAL 63
Query: 205 XCNIFEVPFVKLKRRFSQVCFVAGQPLGYHGSWPTFALSHHILVWWCAKQVHPGVR--FT 378
N + V R +V FVAGQPLGY+GSW FALSHH +VW A + +P F
Sbjct: 64 ALNSCSLKSVT--GRHDEVVFVAGQPLGYYGSWALFALSHHAIVWLAALRAYPHQTRPFL 121
Query: 379 SYAVLGDDVVIADQEVAKVYESALGGLGVKISYQKSLI 492
YA+LGDD+VIAD+ VAK Y S L L V IS KS++
Sbjct: 122 DYALLGDDIVIADRSVAKEYRSLLDALQVDISDAKSIV 159
>gb|AAO21337.1| RdRp-like protein [Sclerotinia homoeocarpa mitovirus]
Length = 720
Score = 97.1 bits (240), Expect = 2e-19
Identities = 66/167 (39%), Positives = 91/167 (53%), Gaps = 11/167 (6%)
Frame = +1
Query: 25 LPQDGTFNQTQPFDRLV-----GSRHS---FSFDLKSATDRWPLVFLFEVVQYLF--DRX 174
LP DGTFNQ P +RLV G H +S+DL SATDR P+ F +++ LF D
Sbjct: 302 LPMDGTFNQQAPLNRLVQLYKEGLLHDVEFYSYDLSSATDRLPMAFQKQIISVLFGSDFA 361
Query: 175 XXXXXXXXXXXCNIFEVPFVKLKRRFSQVCFVAGQPLGYHGSWPTFALSHHILVWWCAKQ 354
+ ++P+ R+S GQP+G SW ALSHH++V A +
Sbjct: 362 DDWATLLVGRDWYLKDIPY-----RYS-----VGQPMGALSSWAMLALSHHVIVQIAAMR 411
Query: 355 VHPGVRFTSYAVLGDDVVIADQEVAKVYESALGG-LGVKISYQKSLI 492
V + FT+YA+LGDD+VIAD+ VA Y + LGV+I+ KSL+
Sbjct: 412 VGK-LSFTNYALLGDDIVIADKAVATSYHMIMTQILGVEINLSKSLV 457
>ref|NP_660176.1| RNA-dependent RNA polymerase [Ophiostoma mitovirus
3a]|gi|3650410|emb|CAA06228.1| RNA-dependent RNA
polymerase [Ophiostoma mitovirus 3a]
Length = 718
Score = 95.9 bits (237), Expect = 4e-19
Identities = 65/167 (38%), Positives = 91/167 (53%), Gaps = 11/167 (6%)
Frame = +1
Query: 25 LPQDGTFNQTQPFDRLV-----GSRHS---FSFDLKSATDRWPLVFLFEVVQYLFDRXXX 180
LP DGTFNQ P +RLV G H +S+DL SATDR P+ F +++ LF
Sbjct: 301 LPMDGTFNQQAPLNRLVQLYQDGLLHDVEFYSYDLSSATDRLPMAFQKQIISVLFGSKFA 360
Query: 181 XXXXXXXXXCNIF--EVPFVKLKRRFSQVCFVAGQPLGYHGSWPTFALSHHILVWWCAKQ 354
+ + ++P+ R+S GQP+G SW ALSHH++V A +
Sbjct: 361 KDWATLLVGRDWYLKDIPY-----RYS-----VGQPMGALSSWAMLALSHHVIVQIAAMR 410
Query: 355 VHPGVRFTSYAVLGDDVVIADQEVAKVYESALGG-LGVKISYQKSLI 492
V + FT+YA+LGDD+VIAD+ VA Y + LGV+I+ KSL+
Sbjct: 411 VGK-LPFTNYALLGDDIVIADKAVATSYHMIMTQILGVEINLSKSLV 456
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 117
effective length of database: 273,826,036
effective search space used: 23822865132
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)