BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= orf105b.f
         (318 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_085589.1|  orf105b [Arabidopsis thaliana]|gi|1785790|...   222   8e-58
emb|CAA51609.1|  ipa-53r [Bacillus subtilis]|gi|16080852|ref...    31   3.5  
gb|EAA18742.1|  dentin phosphoryn [Plasmodium yoelii yoelii]       31   4.6  
pir||F90457  hypothetical protein soxC-like [imported] - Sul...    30   6.0  
gb|EAA20216.1|  hypothetical protein [Plasmodium yoelii yoelii]    30   7.8  

>ref|NP_085589.1| orf105b [Arabidopsis thaliana]|gi|1785790|emb|CAA69787.1| orf105b
           [Arabidopsis thaliana]
          Length = 105

 Score =  222 bits (566), Expect = 8e-58
 Identities = 105/105 (100%), Positives = 105/105 (100%)
 Frame = +1

Query: 1   MKYHFSSMEPWWKREFSFCIPAIYIKMASISLFQNSWLKMKHLPSCLFTQTTNTLGIYRK 180
           MKYHFSSMEPWWKREFSFCIPAIYIKMASISLFQNSWLKMKHLPSCLFTQTTNTLGIYRK
Sbjct: 1   MKYHFSSMEPWWKREFSFCIPAIYIKMASISLFQNSWLKMKHLPSCLFTQTTNTLGIYRK 60

Query: 181 KKPNHSRDNPRINSNLSTNYAQAKSVERSRSNSLNSGPNPLENAT 315
           KKPNHSRDNPRINSNLSTNYAQAKSVERSRSNSLNSGPNPLENAT
Sbjct: 61  KKPNHSRDNPRINSNLSTNYAQAKSVERSRSNSLNSGPNPLENAT 105



>emb|CAA51609.1| ipa-53r [Bacillus subtilis]|gi|16080852|ref|NP_391680.1| alternate
           gene name: ipa-53r [Bacillus
           subtilis]|gi|2636336|emb|CAB15827.1| alternate gene
           name: ipa-53r [Bacillus
           subtilis]|gi|732358|sp|P39611|YWDC_BACSU Hypothetical
           protein ywdC|gi|629060|pir||S39708 ywdC protein -
           Bacillus subtilis
          Length = 142

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 16/46 (34%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
 Frame = +1

Query: 7   YHFSSMEPWWKREFSFCIPAIYIKMA-SISLFQNSWLKMKHLPSCL 141
           YH  ++   +K  F F     +I    S S+F  SWLK++ +PSC+
Sbjct: 11  YHRLTLRKPFKPAFDFGYICFFIHFVRSTSVFGPSWLKIRSIPSCV 56



>gb|EAA18742.1| dentin phosphoryn [Plasmodium yoelii yoelii]
          Length = 1132

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 23/80 (28%), Positives = 41/80 (50%), Gaps = 7/80 (8%)
 Frame = +1

Query: 94  LFQNSWLKMKHLPSCLFTQTTNTLGIYRK-----KKPNHSRDNPRINSNLSTNYAQAKSV 258
           LF+N+  + K L      Q +  + I +K     KKP+ +  NP +NS   +  +Q  S 
Sbjct: 226 LFKNAKTRSKKL------QNSRQIRIQKKPSGDPKKPSVNSQNPSVNSQNPSADSQKSSA 279

Query: 259 --ERSRSNSLNSGPNPLENA 312
             ++S ++S  S P+P +N+
Sbjct: 280 DSQKSSADSQKSSPDPEKNS 299



>pir||F90457 hypothetical protein soxC-like [imported] - Sulfolobus
           solfataricus|gi|13816153|gb|AAK42917.1| Quinol oxidase
           (SoxABC), cytochrome B subunit, putative (soxC-like)
           [Sulfolobus solfataricus]|gi|15899522|ref|NP_344127.1|
           Quinol oxidase (SoxABC), cytochrome B subunit, putative
           (soxC-like) [Sulfolobus solfataricus]
          Length = 542

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 4   KYHFSSMEPWWKREFSFCIPAIYIKMASISLFQNSWLKMKHLPSCL 141
           K  +    PWW R F + +  I++    I +  N++  +  LP  L
Sbjct: 225 KEEWQKFNPWWPRNFVYMMSLIFLTWGFILIIPNAFAYLNGLPQQL 270



>gb|EAA20216.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 1424

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 20/84 (23%), Positives = 40/84 (46%), Gaps = 7/84 (8%)
 Frame = +1

Query: 85  SISLFQNSWLKMKHLPSCLFTQTTNTLGIYR--KKKPNHSRDNPRINSN-----LSTNYA 243
           +I++ +N++   +++ + L  Q    L   +  KKK  ++ DNP  N       +  N  
Sbjct: 575 NITINKNTYFNNQNVNNALLGQNAEELKNQKMSKKKQKNNDDNPSKNDGKRKKKMMENNL 634

Query: 244 QAKSVERSRSNSLNSGPNPLENAT 315
               +   ++NS++S PNP+   T
Sbjct: 635 NNMPIPAYQNNSISSMPNPMTQQT 658



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 81
effective length of database: 322,343,704
effective search space used: 7736248896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)