BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= orf145c.f
         (438 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_085586.1|  orf145c [Arabidopsis thaliana]|gi|1785787|...   290   3e-78
gb|AAM86947.1|AE013942_1  partial leucine-rich repeat protei...    35   0.16 
ref|NP_404622.1|  putative antigenic leucine-rich repeat pro...    35   0.16 
gb|AAK41172.1|  Tryptophan synthase alpha chain (trpA) [Sulf...    33   0.77 
emb|CAA90308.1|  tryptophan synthase component a [Sulfolobus...    33   0.77 

>ref|NP_085586.1| orf145c [Arabidopsis thaliana]|gi|1785787|emb|CAA69784.1| orf145c
           [Arabidopsis thaliana]
          Length = 145

 Score =  290 bits (741), Expect = 3e-78
 Identities = 145/145 (100%), Positives = 145/145 (100%)
 Frame = +1

Query: 1   MTKREYNSQPEMKEEVLAYLLQLSASLVLPVAIWLIAAGQIFTCLRGYTISNYQEKVEEK 180
           MTKREYNSQPEMKEEVLAYLLQLSASLVLPVAIWLIAAGQIFTCLRGYTISNYQEKVEEK
Sbjct: 1   MTKREYNSQPEMKEEVLAYLLQLSASLVLPVAIWLIAAGQIFTCLRGYTISNYQEKVEEK 60

Query: 181 LCSTLVDKISEKLADLFPVYGITPSRNAPFPTILEQLLATVSQEERLAYLSNMYNSLIEM 360
           LCSTLVDKISEKLADLFPVYGITPSRNAPFPTILEQLLATVSQEERLAYLSNMYNSLIEM
Sbjct: 61  LCSTLVDKISEKLADLFPVYGITPSRNAPFPTILEQLLATVSQEERLAYLSNMYNSLIEM 120

Query: 361 GIDSPCFYPIVQTFLFLMGGGGGPA 435
           GIDSPCFYPIVQTFLFLMGGGGGPA
Sbjct: 121 GIDSPCFYPIVQTFLFLMGGGGGPA 145



>gb|AAM86947.1|AE013942_1 partial leucine-rich repeat protein [Yersinia pestis
           KIM]|gi|15979074|emb|CAC89848.1| putative antigenic
           leucine-rich repeat protein [Yersinia pestis
           CO92]|gi|22127273|ref|NP_670696.1| partial leucine-rich
           repeat protein [Yersinia pestis
           KIM]|gi|16121307|ref|NP_404620.1| putative antigenic
           leucine-rich repeat protein [Yersinia
           pestis]|gi|25510016|pir||AE0123 probable antigenic
           leucine-rich repeat protein YPO1005 [imported] -
           Yersinia pestis (strain CO92)
          Length = 626

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 24/75 (32%), Positives = 37/75 (49%)
 Frame = +1

Query: 4   TKREYNSQPEMKEEVLAYLLQLSASLVLPVAIWLIAAGQIFTCLRGYTISNYQEKVEEKL 183
           T +  N+ PE K+++ A+LLQL+ S  L    +LIA     TC    T+++   +    L
Sbjct: 365 TTQNANNIPEFKQQIAAWLLQLADSPTLREQTFLIAQEASATCEDRITLTHNDMQKAVML 424

Query: 184 CSTLVDKISEKLADL 228
                 K  EKL +L
Sbjct: 425 HEVEKGKYDEKLPEL 439



>ref|NP_404622.1| putative antigenic leucine-rich repeat protein [Yersinia
           pestis]|gi|21960351|gb|AAM86950.1|AE013942_4 partial
           leucine-rich repeat protein [Yersinia pestis
           KIM]|gi|25510020|pir||AG0123 probable antigenic
           leucine-rich repeat protein YPO1007 [imported] -
           Yersinia pestis (strain
           CO92)|gi|15979076|emb|CAC89850.1| putative antigenic
           leucine-rich repeat protein [Yersinia pestis
           CO92]|gi|22127276|ref|NP_670699.1| partial leucine-rich
           repeat protein [Yersinia pestis KIM]
          Length = 605

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 23/75 (30%), Positives = 36/75 (47%)
 Frame = +1

Query: 4   TKREYNSQPEMKEEVLAYLLQLSASLVLPVAIWLIAAGQIFTCLRGYTISNYQEKVEEKL 183
           T +   + PE K+++ A+LLQL+ S  L    +LIA     TC    T+++   +    L
Sbjct: 344 TTQNVKNIPEFKQQIAAWLLQLAGSFTLREQTFLIAQEASATCEDRITLTHNDMQKAVML 403

Query: 184 CSTLVDKISEKLADL 228
                 K  EKL +L
Sbjct: 404 HEVEKGKYDEKLPEL 418



>gb|AAK41172.1| Tryptophan synthase alpha chain (trpA) [Sulfolobus
           solfataricus]|gi|14424472|sp|P50382|TRPA_SULSO
           Tryptophan synthase alpha
           chain|gi|15897777|ref|NP_342382.1| Tryptophan synthase
           alpha chain (trpA) [Sulfolobus
           solfataricus]|gi|25392530|pir||E90239 tryptophan
           synthase alpha chain (trpA) [imported] - Sulfolobus
           solfataricus
          Length = 245

 Score = 33.1 bits (74), Expect = 0.77
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +1

Query: 193 LVDKISEKLADLFPVYGITPSRNAPFPTILEQLLATV 303
           L+ K+S K++DLF  YG+ P+   P P  ++QL+  V
Sbjct: 146 LIHKVS-KISDLFLYYGVRPTTGVPIPVSVKQLINRV 181



>emb|CAA90308.1| tryptophan synthase component a [Sulfolobus solfataricus]
          Length = 243

 Score = 33.1 bits (74), Expect = 0.77
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +1

Query: 193 LVDKISEKLADLFPVYGITPSRNAPFPTILEQLLATV 303
           L+ K+S K++DLF  YG+ P+   P P  ++QL+  V
Sbjct: 144 LIHKVS-KISDLFLYYGVRPTTGVPIPVSVKQLINRV 179



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 121
effective length of database: 268,435,184
effective search space used: 6442444416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)