BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= orf107h.f
         (384 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_085585.1|  orf107h [Arabidopsis thaliana]|gi|1785786|...   265   1e-70
gb|AAD34889.1|  unknown [Oryza sativa]                            109   7e-24
dbj|BAC19901.1|  hypothetical protein [Oryza sativa (japonic...   109   7e-24
ref|NP_064003.1|  orf300 [Beta vulgaris]|gi|9049305|dbj|BAA9...    39   0.012
sp|P15688|NU2M_BETVU  NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2...    39   0.012

>ref|NP_085585.1| orf107h [Arabidopsis thaliana]|gi|1785786|emb|CAA69783.1| orf107h
           [Arabidopsis thaliana]
          Length = 127

 Score =  265 bits (677), Expect = 1e-70
 Identities = 127/127 (100%), Positives = 127/127 (100%)
 Frame = +1

Query: 1   MLPAGCWNDTSRDGPGFRKMKGPKVEIGGYKFPISLGAENESTSRCDTAFSFLVGKERRS 180
           MLPAGCWNDTSRDGPGFRKMKGPKVEIGGYKFPISLGAENESTSRCDTAFSFLVGKERRS
Sbjct: 1   MLPAGCWNDTSRDGPGFRKMKGPKVEIGGYKFPISLGAENESTSRCDTAFSFLVGKERRS 60

Query: 181 PSEPNRPMKNKRRAKPNGEAHAEQARRKISVEEKQPSSFPSHPGPKAVQSFLAKSRIWGF 360
           PSEPNRPMKNKRRAKPNGEAHAEQARRKISVEEKQPSSFPSHPGPKAVQSFLAKSRIWGF
Sbjct: 61  PSEPNRPMKNKRRAKPNGEAHAEQARRKISVEEKQPSSFPSHPGPKAVQSFLAKSRIWGF 120

Query: 361 LLRYLTI 381
           LLRYLTI
Sbjct: 121 LLRYLTI 127



>gb|AAD34889.1| unknown [Oryza sativa]
          Length = 166

 Score =  109 bits (273), Expect = 7e-24
 Identities = 68/125 (54%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
 Frame = -3

Query: 364 ARSPKSLIWPGKTALLWAQDAKGMXXXXXXXXXXXXX--XXXXALPHWALLSSYSSLDGS 191
           A SPKSLIWPG  ALLWAQ+AKGM                      HW   +    L   
Sbjct: 40  AISPKSLIWPGNKALLWAQEAKGMSSAASPPHFFISPCPFRMRFARHWRF-ALLLFLHWR 98

Query: 190 VRMDFAVLSQLKKKRLYHIEMSIRFPPPMRWGICN--PLFLLWGPSSF*IQARPGSCRSN 17
           VRMDFAVLSQ K K LYHIEMSIRFPP MRWGI +  P   + G     I+ARPGS RSN
Sbjct: 99  VRMDFAVLSQRKWKGLYHIEMSIRFPPQMRWGISHLCPFIFMKG-----IKARPGSRRSN 153

Query: 16  NRRGA 2
           NRRGA
Sbjct: 154 NRRGA 158



>dbj|BAC19901.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 173

 Score =  109 bits (273), Expect = 7e-24
 Identities = 68/125 (54%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
 Frame = -3

Query: 364 ARSPKSLIWPGKTALLWAQDAKGMXXXXXXXXXXXXX--XXXXALPHWALLSSYSSLDGS 191
           A SPKSLIWPG  ALLWAQ+AKGM                      HW   +    L   
Sbjct: 40  AISPKSLIWPGNKALLWAQEAKGMSSAASPPHFFISPCPFRMRFARHWRF-ALLLFLHWR 98

Query: 190 VRMDFAVLSQLKKKRLYHIEMSIRFPPPMRWGICN--PLFLLWGPSSF*IQARPGSCRSN 17
           VRMDFAVLSQ K K LYHIEMSIRFPP MRWGI +  P   + G     I+ARPGS RSN
Sbjct: 99  VRMDFAVLSQRKWKGLYHIEMSIRFPPQMRWGISHLCPFIFMKG-----IKARPGSRRSN 153

Query: 16  NRRGA 2
           NRRGA
Sbjct: 154 NRRGA 158



>ref|NP_064003.1| orf300 [Beta vulgaris]|gi|9049305|dbj|BAA99315.1| orf300 [Beta
           vulgaris]
          Length = 300

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 2   CSPPVVGTTRAGTGLDSER 58
           CSPPVVGTTRAG GL+SER
Sbjct: 282 CSPPVVGTTRAGPGLNSER 300



>sp|P15688|NU2M_BETVU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2|gi|66148|pir||DNETU2 NADH2
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - sugar
           beet mitochondrion|gi|12822|emb|CAA34728.1|
           NADH:ubiquinone reductase subunit 2 [Beta vulgaris]
          Length = 515

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 2   CSPPVVGTTRAGTGLDSER 58
           CSPPVVGTTRAG GL+SER
Sbjct: 497 CSPPVVGTTRAGPGLNSER 515



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 103
effective length of database: 292,694,018
effective search space used: 7024656432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)