BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= orf136b.f
         (411 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_085583.1|  orf136b [Arabidopsis thaliana]|gi|20198278...   258   9e-69
pir||F70430  hypothetical protein aq_1502 - Aquifex aeolicus...    31   3.1  
emb|CAB57534.1|  replication factor C, large subunit [Sulfol...    31   4.0  
gb|ZP_00081752.1|  hypothetical protein [Geobacter metallire...    31   4.0  
gb|AAL62445.1|  unknown protein [Arabidopsis thaliana]|gi|21...    30   5.2  

>ref|NP_085583.1| orf136b [Arabidopsis thaliana]|gi|20198278|gb|AAM15494.1|
           hypothetical protein [Arabidopsis
           thaliana]|gi|1785785|emb|CAA69815.1| orf136b
           [Arabidopsis thaliana]|gi|15226083|ref|NP_178783.1|
           hypothetical protein; protein id: At2g07691.1
           [Arabidopsis thaliana]
          Length = 136

 Score =  258 bits (660), Expect = 9e-69
 Identities = 120/120 (100%), Positives = 120/120 (100%)
 Frame = +1

Query: 49  DVVFEGEAAMNEYTFYRNWVESWLQHIRSYYLLFIDGDPSLSKFFEIEICAHSWKRSTFD 228
           DVVFEGEAAMNEYTFYRNWVESWLQHIRSYYLLFIDGDPSLSKFFEIEICAHSWKRSTFD
Sbjct: 17  DVVFEGEAAMNEYTFYRNWVESWLQHIRSYYLLFIDGDPSLSKFFEIEICAHSWKRSTFD 76

Query: 229 QQVFKFGLLWECVDIARSRTVYWQCALGTGHIQEDKVSEATSPFTDDSCTNSCLSRMTGQ 408
           QQVFKFGLLWECVDIARSRTVYWQCALGTGHIQEDKVSEATSPFTDDSCTNSCLSRMTGQ
Sbjct: 77  QQVFKFGLLWECVDIARSRTVYWQCALGTGHIQEDKVSEATSPFTDDSCTNSCLSRMTGQ 136



>pir||F70430 hypothetical protein aq_1502 - Aquifex
           aeolicus|gi|15606657|ref|NP_214037.1| putative protein
           [Aquifex aeolicus]|gi|2983885|gb|AAC07437.1| putative
           protein [Aquifex
           aeolicus]|gi|14916867|sp|O67472|YF02_AQUAE Hypothetical
           protein AQ_1502
          Length = 388

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 18/61 (29%), Positives = 27/61 (43%), Gaps = 4/61 (6%)
 Frame = +2

Query: 107 WNPGYSTSVHTTFFSLMEILLFQSSLRLRYVPT----LGSVRLSTNRSLSLAFYGSVWIL 274
           W   +        FS+   LLF    R  Y+P     L  + LS  RS+ LAF+   +++
Sbjct: 131 WGGTFEVGFFYALFSITTFLLFFKERRFIYIPLFLLFLAVIFLSARRSMMLAFFVIFYLI 190

Query: 275 L 277
           L
Sbjct: 191 L 191



>emb|CAB57534.1| replication factor C, large subunit [Sulfolobus
           solfataricus]|gi|13813942|gb|AAK41066.1| Activator 1,
           replication factor C (RFC) large subunit (rfcL)
           [Sulfolobus solfataricus]|gi|15897671|ref|NP_342276.1|
           Activator 1, replication factor C (RFC) large subunit
           (rfcL) [Sulfolobus solfataricus]|gi|25394714|pir||C90226
           hypothetical protein rfcL [imported] - Sulfolobus
           solfataricus
          Length = 405

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 16/66 (24%), Positives = 25/66 (37%)
 Frame = +1

Query: 97  RNWVESWLQHIRSYYLLFIDGDPSLSKFFEIEICAHSWKRSTFDQQVFKFGLLWECVDIA 276
           + W+ESWL    +   + + G P + K    E  AH +     +        L +   IA
Sbjct: 27  QEWIESWLNGNSNVKAVLLHGPPGVGKTVLAEALAHDYNFELLEMNASDSRKLQDIKSIA 86

Query: 277 RSRTVY 294
               VY
Sbjct: 87  EKAAVY 92



>gb|ZP_00081752.1| hypothetical protein [Geobacter metallireducens]
          Length = 711

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 13/42 (30%), Positives = 17/42 (39%)
 Frame = +1

Query: 256 WECVDIARSRTVYWQCALGTGHIQEDKVSEATSPFTDDSCTN 381
           W  V  A S  +YW    G       K++   SP+T    TN
Sbjct: 391 WGAVSSATSYNIYWATTTGVTPATGTKIANVNSPYTQTGLTN 432



>gb|AAL62445.1| unknown protein [Arabidopsis thaliana]|gi|21592607|gb|AAM64556.1|
           unknown [Arabidopsis thaliana]
          Length = 206

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 26/89 (29%), Positives = 42/89 (46%)
 Frame = -2

Query: 407 CPVILDKQLLVQLSSVKGLVASDTLSSCI*PVPKAHCQ*TVLERAISTHSHRRPNLKTCW 228
           CP+ L+++LLV  S  +      + SS I  +PK     ++L R    H    P+     
Sbjct: 24  CPLCLNERLLVLASKQRSSRTKHSSSSPIISLPKIFALSSLLSRLDLRHRKFHPSSDL-- 81

Query: 227 SKVERFQEWAHISISKNFEREGSPSMKRR 141
             V   QE + ISI   FE +G+ S +++
Sbjct: 82  -DVSTSQEDSFISI--KFENDGNASWEKK 107



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 112
effective length of database: 280,564,601
effective search space used: 6733550424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)