BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= orf136a.f
         (411 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM15493.1|  hypothetical protein [Arabidopsis thaliana]|...   275   9e-74
ref|NP_495270.1|  Putative nuclear protein, nematode specifi...    36   0.12 
dbj|BAA21488.1|  Xlimk1 [Xenopus laevis]                           33   1.1  
gb|ZP_00034609.1|  hypothetical protein [Burkholderia fungorum]    32   2.3  
pir||AC0976  probable autotransporter sapB [imported] - Salm...    32   2.3  

>gb|AAM15493.1| hypothetical protein [Arabidopsis
           thaliana]|gi|1785784|emb|CAA69814.1| orf136a
           [Arabidopsis thaliana]|gi|13449400|ref|NP_085582.1|
           orf136a [Arabidopsis
           thaliana]|gi|15226085|ref|NP_178784.1| hypothetical
           protein; protein id: At2g07692.1 [Arabidopsis thaliana]
          Length = 136

 Score =  275 bits (703), Expect = 9e-74
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +1

Query: 1   MPRTELILNAAVILYTMIPPDAHSLGSEGRVVNGNWRDTSDVKEGSLPREVTKQVNGSLS 180
           MPRTELILNAAVILYTMIPPDAHSLGSEGRVVNGNWRDTSDVKEGSLPREVTKQVNGSLS
Sbjct: 1   MPRTELILNAAVILYTMIPPDAHSLGSEGRVVNGNWRDTSDVKEGSLPREVTKQVNGSLS 60

Query: 181 SRTKQVNEFSKHTRFLVDISFSCCSLINRSLWESAQKDELSDSFGKALTTKPECLAVRET 360
           SRTKQVNEFSKHTRFLVDISFSCCSLINRSLWESAQKDELSDSFGKALTTKPECLAVRET
Sbjct: 61  SRTKQVNEFSKHTRFLVDISFSCCSLINRSLWESAQKDELSDSFGKALTTKPECLAVRET 120

Query: 361 PRNFRRNLCLVIPSLN 408
           PRNFRRNLCLVIPSLN
Sbjct: 121 PRNFRRNLCLVIPSLN 136



>ref|NP_495270.1| Putative nuclear protein, nematode specific [Caenorhabditis
           elegans]|gi|746467|gb|AAC46792.1| Hypothetical protein
           C32D5.4 [Caenorhabditis elegans]|gi|7496836|pir||T15733
           hypothetical protein C32D5.4 - Caenorhabditis
           elegans|gi|2496920|sp|Q09264|YQD4_CAEEL HYPOTHETICAL
           42.6 KD PROTEIN C32D5.4 IN CHROMOSOME II
          Length = 369

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 29/95 (30%), Positives = 49/95 (51%)
 Frame = +1

Query: 100 GNWRDTSDVKEGSLPREVTKQVNGSLSSRTKQVNEFSKHTRFLVDISFSCCSLINRSLWE 279
           GN  +T+ +   +L   VT Q+    +S+ K ++++ K  +FL+ ISFS    I RS+ +
Sbjct: 43  GNCFETNIIFTATLFHSVTFQLR---TSKRKNIDDWKKINQFLI-ISFSSKINIVRSMLK 98

Query: 280 SAQKDELSDSFGKALTTKPECLAVRETPRNFRRNL 384
             + D       + +TT PE   +RE P   +R L
Sbjct: 99  CKEDDF------EVMTTPPEEAEMRENPNEMKRLL 127



>dbj|BAA21488.1| Xlimk1 [Xenopus laevis]
          Length = 615

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
 Frame = -2

Query: 389 KHRFLLKFLGVSLTAKHSGFVVSAFPKESL------SSSFCADSQRDLFIRE--QQLKLM 234
           +H  +LKF+GV    K   F+    P  +L        + C  +QR  F R+    +  +
Sbjct: 367 EHPHVLKFIGVLYKDKRLNFITEYIPGGTLRRVIKSMDTHCPWNQRVSFARDIAAGMTYL 426

Query: 233 STRNLVCL-LNSLTCLVRED 177
            + N++   LNS  CLVRED
Sbjct: 427 HSMNIIHRDLNSHNCLVRED 446



>gb|ZP_00034609.1| hypothetical protein [Burkholderia fungorum]
          Length = 177

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 245 LKLMSTRNLVCLLNSLTCLVREDRLPLTCLVTSRGRL 135
           + LM T     L N+L  LVR  +LPL  L++ RG L
Sbjct: 73  ITLMQTSGFATLPNALASLVRPYQLPLVMLISERGTL 109



>pir||AC0976 probable autotransporter sapB [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain
           CT18)|gi|10945148|emb|CAC14217.1| sapB protein
           [Salmonella typhi]|gi|16504923|emb|CAD03303.1| putative
           autotransporter [Salmonella enterica subsp. enterica
           serovar Typhi]|gi|16762618|ref|NP_458235.1| putative
           autotransporter [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 1107

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 24/87 (27%), Positives = 42/87 (47%)
 Frame = +1

Query: 97  NGNWRDTSDVKEGSLPREVTKQVNGSLSSRTKQVNEFSKHTRFLVDISFSCCSLINRSLW 276
           NG+    +++  G+L  + T  VNGS    T Q  +  ++T  + DI+ S  +L + +L 
Sbjct: 279 NGSASKITNLAAGTLAADSTDAVNGSQLYETNQ--KVDQNTSAIADINTSITNLSSDNLS 336

Query: 277 ESAQKDELSDSFGKALTTKPECLAVRE 357
            +   +  S S G + T K   +A  E
Sbjct: 337 WNETTNSFSASHGSSTTNKITNVAAGE 363



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 112
effective length of database: 280,564,601
effective search space used: 6733550424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)