BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orf291.f
(876 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_085580.1| orf291 [Arabidopsis thaliana]|gi|1785782|e... 484 e-136
gb|AAM15495.1| hypothetical protein [Arabidopsis thaliana]|... 482 e-135
ref|NP_085487.1| cytochrome c oxidase subunit 2 [Arabidopsi... 145 1e-33
gb|AAB92666.1| cytochrome c oxidase subunit II [Brassica ra... 143 3e-33
pir||T08043 cytochrome-c oxidase (EC 1.9.3.1) chain II - ra... 140 2e-32
>ref|NP_085580.1| orf291 [Arabidopsis thaliana]|gi|1785782|emb|CAA69812.1| orf291
[Arabidopsis thaliana]
Length = 291
Score = 484 bits (1246), Expect = e-136
Identities = 244/291 (83%), Positives = 244/291 (83%)
Frame = +1
Query: 1 MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGXXXXXXXXXXXXXXXXXXXXXXXVRA 180
MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQG VRA
Sbjct: 1 MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRA 60
Query: 181 LWHFHYKKNAIPQRIVHGTTIEILRTIFPCFISIFIVEPSFXXXXXXXXXXXFXXXXXXX 360
LWHFHYKKNAIPQRIVHGTTIEILRTIFPCFISIFIVEPSF F
Sbjct: 61 LWHFHYKKNAIPQRIVHGTTIEILRTIFPCFISIFIVEPSFALALDDAAEALFPNTAPTP 120
Query: 361 XXXXXXEDSFGLRVLSEPWPITRNLGLESSICNRIRLLEAANSPFLLGKEKGQYWGEIQE 540
EDSFGLRVLSEPWPITRNLGLESSICNRIRLLEAANSPFLLGKEKGQYWGEIQE
Sbjct: 121 SNTSSSEDSFGLRVLSEPWPITRNLGLESSICNRIRLLEAANSPFLLGKEKGQYWGEIQE 180
Query: 541 CLYNVSEQREYYRLLDFENRDLQIRERKHSCLEVFRGVLLRNPYLEERAAYSPQEAFFDF 720
CLYNVSEQREYYRLLDFENRDLQIRERKHSCLEVFRGVLLRNPYLEERAAYSPQEAFFDF
Sbjct: 181 CLYNVSEQREYYRLLDFENRDLQIRERKHSCLEVFRGVLLRNPYLEERAAYSPQEAFFDF 240
Query: 721 LNERRDALDISNPGSSPAEMDRLEILFLGEIERDLLRRGDESLYIKQLLGD 873
LNERRDALDISNPGSSPAEMDRLEILFLGEIERDLLRRGDESLYIKQLLGD
Sbjct: 241 LNERRDALDISNPGSSPAEMDRLEILFLGEIERDLLRRGDESLYIKQLLGD 291
>gb|AAM15495.1| hypothetical protein [Arabidopsis
thaliana]|gi|15226090|ref|NP_178786.1| hypothetical
protein; protein id: At2g07695.1 [Arabidopsis thaliana]
Length = 291
Score = 482 bits (1240), Expect = e-135
Identities = 243/291 (83%), Positives = 243/291 (83%)
Frame = +1
Query: 1 MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGXXXXXXXXXXXXXXXXXXXXXXXVRA 180
MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQG VRA
Sbjct: 1 MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRA 60
Query: 181 LWHFHYKKNAIPQRIVHGTTIEILRTIFPCFISIFIVEPSFXXXXXXXXXXXFXXXXXXX 360
LWHFHYKKNAIPQRIVHGTTIEILRTIFPCFISIFIVEPSF F
Sbjct: 61 LWHFHYKKNAIPQRIVHGTTIEILRTIFPCFISIFIVEPSFALALDDAAEALFPNTAPTP 120
Query: 361 XXXXXXEDSFGLRVLSEPWPITRNLGLESSICNRIRLLEAANSPFLLGKEKGQYWGEIQE 540
EDSFGL VLSEPWPITRNLGLESSICNRIRLLEAANSPFLLGKEKGQYWGEIQE
Sbjct: 121 SNTSSSEDSFGLSVLSEPWPITRNLGLESSICNRIRLLEAANSPFLLGKEKGQYWGEIQE 180
Query: 541 CLYNVSEQREYYRLLDFENRDLQIRERKHSCLEVFRGVLLRNPYLEERAAYSPQEAFFDF 720
CLYNVSEQREYYRLLDFENRDLQIRERKHSCLEVFRGVLLRNPYLEERAAYSPQEAFFDF
Sbjct: 181 CLYNVSEQREYYRLLDFENRDLQIRERKHSCLEVFRGVLLRNPYLEERAAYSPQEAFFDF 240
Query: 721 LNERRDALDISNPGSSPAEMDRLEILFLGEIERDLLRRGDESLYIKQLLGD 873
LNERRDALDISNPGSSPAEMDRLEILFLGEIERDLLRRGDESLYIKQLLGD
Sbjct: 241 LNERRDALDISNPGSSPAEMDRLEILFLGEIERDLLRRGDESLYIKQLLGD 291
>ref|NP_085487.1| cytochrome c oxidase subunit 2 [Arabidopsis
thaliana]|gi|6851011|emb|CAA69761.3| cytochrome c
oxidase subunit 2 [Arabidopsis thaliana]
Length = 260
Score = 145 bits (365), Expect = 1e-33
Identities = 73/101 (72%), Positives = 74/101 (72%)
Frame = +1
Query: 1 MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGXXXXXXXXXXXXXXXXXXXXXXXVRA 180
MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQG VRA
Sbjct: 1 MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRA 60
Query: 181 LWHFHYKKNAIPQRIVHGTTIEILRTIFPCFISIFIVEPSF 303
LWHFHYKKNAIPQRIVHGTTIEILRTIFP IS+FI PSF
Sbjct: 61 LWHFHYKKNAIPQRIVHGTTIEILRTIFPSIISMFIAIPSF 101
>gb|AAB92666.1| cytochrome c oxidase subunit II [Brassica
rapa]|gi|2707741|gb|AAB92366.1| cytochrome c oxidase
subunit II [Brassica rapa]
Length = 260
Score = 143 bits (361), Expect = 3e-33
Identities = 72/101 (71%), Positives = 74/101 (72%)
Frame = +1
Query: 1 MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGXXXXXXXXXXXXXXXXXXXXXXXVRA 180
MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQG VRA
Sbjct: 1 MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRA 60
Query: 181 LWHFHYKKNAIPQRIVHGTTIEILRTIFPCFISIFIVEPSF 303
LWHFHYK+NAIPQRIVHGTTIEILRTIFP IS+FI PSF
Sbjct: 61 LWHFHYKENAIPQRIVHGTTIEILRTIFPSLISMFIAIPSF 101
>pir||T08043 cytochrome-c oxidase (EC 1.9.3.1) chain II - radish
mitochondrion|gi|2687655|gb|AAB88866.1| cytochrome c
oxidase subunit II [Raphanus sativus]
Length = 260
Score = 140 bits (354), Expect = 2e-32
Identities = 71/101 (70%), Positives = 73/101 (71%)
Frame = +1
Query: 1 MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGXXXXXXXXXXXXXXXXXXXXXXXVRA 180
MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQG VRA
Sbjct: 1 MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRA 60
Query: 181 LWHFHYKKNAIPQRIVHGTTIEILRTIFPCFISIFIVEPSF 303
LWHFHYK+NAIPQRIVHGTTIEI RTIFP IS+FI PSF
Sbjct: 61 LWHFHYKENAIPQRIVHGTTIEIPRTIFPSIISMFIAIPSF 101
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 122
effective length of database: 267,087,471
effective search space used: 45137782599
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)