BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orf205.f
(618 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_085578.1| orf205 [Arabidopsis thaliana]|gi|1785779|e... 328 3e-89
sp|Q06507|ATF4_MOUSE Cyclic-AMP-dependent transcription fac... 34 1.3
gb|AAA53043.1| mATF4 34 1.3
dbj|BAC25014.1| unnamed protein product [Mus musculus] 34 1.3
dbj|BAA25314.1| ATF4 [Mus musculus] 34 1.3
>ref|NP_085578.1| orf205 [Arabidopsis thaliana]|gi|1785779|emb|CAA69809.1| orf205
[Arabidopsis thaliana]
Length = 205
Score = 328 bits (842), Expect = 3e-89
Identities = 167/205 (81%), Positives = 167/205 (81%)
Frame = +1
Query: 1 MQPDLTLLGKLRSTWASATVNVIHPISLCLSWFLGTIGCSSPLPLRCADLRILLLKKKEF 180
MQPDLTLLGKLRSTWASATVNVIHPISLCLSWFLGTIGCSSPLPLRCADLRILLLKKKEF
Sbjct: 1 MQPDLTLLGKLRSTWASATVNVIHPISLCLSWFLGTIGCSSPLPLRCADLRILLLKKKEF 60
Query: 181 CLLPLFYHLGIFQHLFYPIIPLLAFCFYAPRLVCPAASLEFQRRYVVWILAVSRHIVFLE 360
CLLPLFYHLGIFQHLFYPIIPLLAFCFYAPRLVCPAASLEFQRRYVVWILAVSRHIVFLE
Sbjct: 61 CLLPLFYHLGIFQHLFYPIIPLLAFCFYAPRLVCPAASLEFQRRYVVWILAVSRHIVFLE 120
Query: 361 NSYYIMXXXXXXXXXXXXXXXXXXXXXXRKLRRNRSVKAQRIMQRSCHRLLFAPVGNDXX 540
NSYYIM RKLRRNRSVKAQRIMQRSCHRLLFAPVGND
Sbjct: 121 NSYYIMLLHPHHLHHPHPPFLIFLFLILRKLRRNRSVKAQRIMQRSCHRLLFAPVGNDSE 180
Query: 541 XXXXXXXXXXXXXXRRFNRQSVSTV 615
RRFNRQSVSTV
Sbjct: 181 LSAPSAPSESVVPLRRFNRQSVSTV 205
>sp|Q06507|ATF4_MOUSE Cyclic-AMP-dependent transcription factor ATF-4 (C/EBP-related ATF)
(C/ATF) (TAXREB67 homolog)|gi|293842|gb|AAA40476.1|
C/ATF
Length = 349
Score = 34.3 bits (77), Expect = 1.3
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = +3
Query: 183 PPPTVLPSRHLPASLLSNHSTFGFLFLCPSSCLSGRFIGIPEEVCRLD 326
PP TV P HLP SL+ F FL P C G PE L+
Sbjct: 133 PPQTVNPIGHLPESLIKVDQVAPFTFLQPFPCSPGVLSSTPEHSFSLE 180
>gb|AAA53043.1| mATF4
Length = 346
Score = 34.3 bits (77), Expect = 1.3
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = +3
Query: 183 PPPTVLPSRHLPASLLSNHSTFGFLFLCPSSCLSGRFIGIPEEVCRLD 326
PP TV P HLP SL+ F FL P C G PE L+
Sbjct: 130 PPQTVNPIGHLPESLIKVDQVAPFTFLQPFPCSPGVLSSTPEHSFSLE 177
>dbj|BAC25014.1| unnamed protein product [Mus musculus]
Length = 350
Score = 34.3 bits (77), Expect = 1.3
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = +3
Query: 183 PPPTVLPSRHLPASLLSNHSTFGFLFLCPSSCLSGRFIGIPEEVCRLD 326
PP TV P HLP SL+ F FL P C G PE L+
Sbjct: 134 PPQTVNPIGHLPESLIKVDQVAPFTFLQPFPCSPGVLSSTPEHSFSLE 181
>dbj|BAA25314.1| ATF4 [Mus musculus]
Length = 263
Score = 34.3 bits (77), Expect = 1.3
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = +3
Query: 183 PPPTVLPSRHLPASLLSNHSTFGFLFLCPSSCLSGRFIGIPEEVCRLD 326
PP TV P HLP SL+ F FL P C G PE L+
Sbjct: 47 PPQTVNPIGHLPESLIKVDQVAPFTFLQPFPCSPGVLSSTPEHSFSLE 94
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 117
effective length of database: 273,826,036
effective search space used: 24096691168
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)