BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orf102.f
(369 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_085577.1| orf102 [Arabidopsis thaliana]|gi|1785778|e... 256 4e-68
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [A... 121 8e-33
ref|NP_192709.1| RNA-directed DNA polymerase -like protein;... 121 8e-33
pir||H84465 hypothetical protein At2g05200 [imported] - Ara... 115 2e-32
pir||B84497 hypothetical protein At2g11240 [imported] - Ara... 111 3e-29
>ref|NP_085577.1| orf102 [Arabidopsis thaliana]|gi|1785778|emb|CAA69808.1| orf102
[Arabidopsis thaliana]
Length = 122
Score = 256 bits (655), Expect = 4e-68
Identities = 122/122 (100%), Positives = 122/122 (100%)
Frame = +1
Query: 1 MGYGVCHFYLLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLP 180
MGYGVCHFYLLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLP
Sbjct: 1 MGYGVCHFYLLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLP 60
Query: 181 GIRVSNNSPRINHLLFADDTSSARWIPLAAQIWPIFFLSMRLFQGNPVNHPMSNLYFLGS 360
GIRVSNNSPRINHLLFADDTSSARWIPLAAQIWPIFFLSMRLFQGNPVNHPMSNLYFLGS
Sbjct: 61 GIRVSNNSPRINHLLFADDTSSARWIPLAAQIWPIFFLSMRLFQGNPVNHPMSNLYFLGS 120
Query: 361 LP 366
LP
Sbjct: 121 LP 122
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis
thaliana]|gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis
thaliana]|gi|7485606|pir||T04018 hypothetical protein
F17A8.60 - Arabidopsis thaliana
Length = 1274
Score = 121 bits (304), Expect(2) = 8e-33
Identities = 57/76 (75%), Positives = 65/76 (85%)
Frame = +1
Query: 13 VCHFYLLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRV 192
VC F+ING+PQG V PSRGLRQGDPLSPYLFILCTEVLSGLCR+AQE+G + GIRV
Sbjct: 551 VCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRV 610
Query: 193 SNNSPRINHLLFADDT 240
+ SP++NHLLFADDT
Sbjct: 611 ARGSPQVNHLLFADDT 626
Score = 38.9 bits (89), Expect(2) = 8e-33
Identities = 16/26 (61%), Positives = 19/26 (72%)
Frame = +3
Query: 240 FFCKMDPTSCSNLADILSKYEAVSGQ 317
FFCK +PT C L++IL KYE SGQ
Sbjct: 628 FFCKTNPTCCGALSNILKKYELASGQ 653
>ref|NP_192709.1| RNA-directed DNA polymerase -like protein; protein id: At4g09710.1
[Arabidopsis thaliana]
Length = 1245
Score = 121 bits (304), Expect(2) = 8e-33
Identities = 57/76 (75%), Positives = 65/76 (85%)
Frame = +1
Query: 13 VCHFYLLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRV 192
VC F+ING+PQG V PSRGLRQGDPLSPYLFILCTEVLSGLCR+AQE+G + GIRV
Sbjct: 543 VCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRV 602
Query: 193 SNNSPRINHLLFADDT 240
+ SP++NHLLFADDT
Sbjct: 603 ARGSPQVNHLLFADDT 618
Score = 38.9 bits (89), Expect(2) = 8e-33
Identities = 16/26 (61%), Positives = 19/26 (72%)
Frame = +3
Query: 240 FFCKMDPTSCSNLADILSKYEAVSGQ 317
FFCK +PT C L++IL KYE SGQ
Sbjct: 620 FFCKTNPTCCGALSNILKKYELASGQ 645
>pir||H84465 hypothetical protein At2g05200 [imported] - Arabidopsis
thaliana|gi|4755191|gb|AAD29058.1| putative non-LTR
retroelement reverse transcriptase [Arabidopsis
thaliana]|gi|15224487|ref|NP_178591.1| putative non-LTR
retroelement reverse transcriptase; protein id:
At2g05200.1 [Arabidopsis thaliana]
Length = 1229
Score = 115 bits (287), Expect(3) = 2e-32
Identities = 54/69 (78%), Positives = 59/69 (85%)
Frame = +1
Query: 34 FIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRI 213
F+ING PQG V P+RGLRQGDPLSP LFILCTEVLSGLC RAQ +LPG+RVS N PR+
Sbjct: 512 FLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRV 571
Query: 214 NHLLFADDT 240
NHLLFADDT
Sbjct: 572 NHLLFADDT 580
Score = 35.8 bits (81), Expect(3) = 2e-32
Identities = 15/26 (57%), Positives = 19/26 (72%)
Frame = +3
Query: 240 FFCKMDPTSCSNLADILSKYEAVSGQ 317
FF K DP SC+ L++ILS+Y SGQ
Sbjct: 582 FFSKSDPESCNKLSEILSRYGKASGQ 607
Score = 28.5 bits (62), Expect(3) = 2e-32
Identities = 10/12 (83%), Positives = 12/12 (99%)
Frame = +2
Query: 2 WVMECVTSISYS 37
WV+ECVTS+SYS
Sbjct: 500 WVLECVTSVSYS 511
>pir||B84497 hypothetical protein At2g11240 [imported] - Arabidopsis
thaliana|gi|4263655|gb|AAD15377.1| putative non-LTR
retroelement reverse transcriptase [Arabidopsis
thaliana]|gi|15227423|ref|NP_178888.1| putative non-LTR
retroelement reverse transcriptase; protein id:
At2g11240.1 [Arabidopsis thaliana]
Length = 1044
Score = 111 bits (277), Expect(3) = 3e-29
Identities = 50/69 (72%), Positives = 60/69 (86%)
Frame = +1
Query: 34 FIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRI 213
F++NG+ QG VTP RGLRQGDPLSP+LFI+C+EVLSGLCR+AQ G L G+RVS +PR+
Sbjct: 443 FLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRV 502
Query: 214 NHLLFADDT 240
NHLLFADDT
Sbjct: 503 NHLLFADDT 511
Score = 32.3 bits (72), Expect(3) = 3e-29
Identities = 14/26 (53%), Positives = 15/26 (56%)
Frame = +3
Query: 240 FFCKMDPTSCSNLADILSKYEAVSGQ 317
FFC+ D SC IL KYE SGQ
Sbjct: 513 FFCRSDLKSCKTFLCILKKYEEASGQ 538
Score = 25.4 bits (54), Expect(3) = 3e-29
Identities = 6/12 (50%), Positives = 12/12 (100%)
Frame = +2
Query: 2 WVMECVTSISYS 37
W+++C+T++SYS
Sbjct: 431 WILQCITTVSYS 442
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 98
effective length of database: 299,432,583
effective search space used: 7186381992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)