BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= orf100c.f
         (303 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_085576.1|  orf100c [Arabidopsis thaliana]|gi|1785777|...   203   5e-52
gb|ZP_00011329.1|  hypothetical protein [Rhodopseudomonas pa...    33   0.94 
ref|NP_763249.1|  Phosphotransferase system fructose-specifi...    32   2.7  
gb|AAB57670.1|  pectinesterase [Citrus sinensis]                   30   6.1  
pir||T10485  pectinesterase (EC 3.1.1.11) PECS1.1 - sweet or...    30   6.1  

>ref|NP_085576.1| orf100c [Arabidopsis thaliana]|gi|1785777|emb|CAA69807.1| orf100c
           [Arabidopsis thaliana]
          Length = 100

 Score =  203 bits (516), Expect = 5e-52
 Identities = 100/100 (100%), Positives = 100/100 (100%)
 Frame = +1

Query: 1   MSPTLSTGNRDQRGSSRSYAFVSLASHHFTPQGKITITSSLTRKIDPGNFQGQDVVDFSP 180
           MSPTLSTGNRDQRGSSRSYAFVSLASHHFTPQGKITITSSLTRKIDPGNFQGQDVVDFSP
Sbjct: 1   MSPTLSTGNRDQRGSSRSYAFVSLASHHFTPQGKITITSSLTRKIDPGNFQGQDVVDFSP 60

Query: 181 WVVLPDEDKVAFLISCRVTAKIRKSGLPQLFKTNTSRDIG 300
           WVVLPDEDKVAFLISCRVTAKIRKSGLPQLFKTNTSRDIG
Sbjct: 61  WVVLPDEDKVAFLISCRVTAKIRKSGLPQLFKTNTSRDIG 100



>gb|ZP_00011329.1| hypothetical protein [Rhodopseudomonas palustris]
          Length = 259

 Score = 33.1 bits (74), Expect = 0.94
 Identities = 20/58 (34%), Positives = 32/58 (54%), Gaps = 3/58 (5%)
 Frame = +1

Query: 13  LSTGNRDQRGSSRSYAF---VSLASHHFTPQGKITITSSLTRKIDPGNFQGQDVVDFS 177
           L  GN D+R ++ + AF   +++A+H F P G   +   L R+  PG F   D VD++
Sbjct: 104 LLAGNADRRDAAAALAFRRSLAVAAHFFAPHGIDVLIEPLNRRDAPGYF--LDDVDYA 159



>ref|NP_763249.1| Phosphotransferase system fructose-specific component IIB [Vibrio
           vulnificus CMCP6]|gi|27359294|gb|AAO08239.1|AE016812_221
           Phosphotransferase system fructose-specific component
           IIB [Vibrio vulnificus CMCP6]
          Length = 99

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 21/54 (38%), Positives = 28/54 (50%)
 Frame = +1

Query: 70  LASHHFTPQGKITITSSLTRKIDPGNFQGQDVVDFSPWVVLPDEDKVAFLISCR 231
           L  H      K+ I S +  +  PG F+G +VV  S   VL + DKV FL+ CR
Sbjct: 48  LTPHDVAHADKVLIVSDIEIE-QPGRFEGMNVVKLSIEDVLLNVDKV-FLVHCR 99



>gb|AAB57670.1| pectinesterase [Citrus sinensis]
          Length = 584

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 1/51 (1%)
 Frame = -2

Query: 287 EVFVLKSCGNPLFLIFAVTRQDMRKATLSSSGNTTQGEKSTTSWP-WKFPG 138
           +V V K C N L +I  +T  DM     S++   T+   +   WP W  PG
Sbjct: 210 QVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLTEETSTVDGWPAWLSPG 260



>pir||T10485 pectinesterase (EC 3.1.1.11) PECS1.1 - sweet
           orange|gi|6174912|sp|O04886|PME1_CITSI Pectinesterase
           1.1 precursor (Pectin methylesterase)
           (PE)|gi|2098705|gb|AAB57667.1| pectinesterase [Citrus
           sinensis]
          Length = 584

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 1/51 (1%)
 Frame = -2

Query: 287 EVFVLKSCGNPLFLIFAVTRQDMRKATLSSSGNTTQGEKSTTSWP-WKFPG 138
           +V V K C N L +I  +T  DM     S++   T+   +   WP W  PG
Sbjct: 210 QVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLTEETSTVDGWPAWLSPG 260



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 76
effective length of database: 329,082,269
effective search space used: 7897974456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)