BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orf145b.f
(438 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_085575.1| orf145b [Arabidopsis thaliana]|gi|1785776|... 275 1e-73
gb|AAL89962.1| AT01932p [Drosophila melanogaster] 30 5.0
gb|AAF46292.2| CG1514-PA [Drosophila melanogaster]|gi|24640... 30 5.0
gb|AAD03657.3| hexon protein [Human adenovirus type 4] 30 8.5
emb|CAA76708.1| hexon protein [Human adenovirus type 17] 30 8.5
>ref|NP_085575.1| orf145b [Arabidopsis thaliana]|gi|1785776|emb|CAA69806.1| orf145b
[Arabidopsis thaliana]
Length = 145
Score = 275 bits (702), Expect = 1e-73
Identities = 133/145 (91%), Positives = 133/145 (91%)
Frame = +1
Query: 1 MWSYEGKCGFLLLSVYKEQVLDSYSPLTKENGISSNPRYIKRKFPFDSGFPFTRKLPAKV 180
MWSYEGKCGFLLLSVYKEQVLDSYSPLTKENGISSNPRYIKRKFPFDSGFPFTRKLPAKV
Sbjct: 1 MWSYEGKCGFLLLSVYKEQVLDSYSPLTKENGISSNPRYIKRKFPFDSGFPFTRKLPAKV 60
Query: 181 EXXXXXXXXXXXXVANLILWLSFHSARVGHQKLSYHLLEWKAFPSSFRNKESKATCDLSS 360
E VANLILWLSFHSARVGHQKLSYHLLEWKAFPSSFRNKESKATCDLSS
Sbjct: 61 ESFLCLPLFLSFLVANLILWLSFHSARVGHQKLSYHLLEWKAFPSSFRNKESKATCDLSS 120
Query: 361 WSNPYFKRKAQIPFSFSRYLLKYLF 435
WSNPYFKRKAQIPFSFSRYLLKYLF
Sbjct: 121 WSNPYFKRKAQIPFSFSRYLLKYLF 145
>gb|AAL89962.1| AT01932p [Drosophila melanogaster]
Length = 1117
Score = 30.4 bits (67), Expect = 5.0
Identities = 15/37 (40%), Positives = 23/37 (61%)
Frame = -2
Query: 380 LK*GLDQEDRSQVALLSLFRNEDGKAFHSNK**DSFW 270
LK L +S+ +L +LFR++ GKA ++K D FW
Sbjct: 792 LKQSLPSPKKSKFSLSTLFRSDAGKAHEASKATDPFW 828
>gb|AAF46292.2| CG1514-PA [Drosophila melanogaster]|gi|24640444|ref|NP_572421.1|
CG1514-PA [Drosophila melanogaster]
Length = 1117
Score = 30.4 bits (67), Expect = 5.0
Identities = 15/37 (40%), Positives = 23/37 (61%)
Frame = -2
Query: 380 LK*GLDQEDRSQVALLSLFRNEDGKAFHSNK**DSFW 270
LK L +S+ +L +LFR++ GKA ++K D FW
Sbjct: 792 LKQSLPSPKKSKFSLSTLFRSDAGKAHEASKATDPFW 828
>gb|AAD03657.3| hexon protein [Human adenovirus type 4]
Length = 936
Score = 29.6 bits (65), Expect = 8.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 295 EWKAFPS-SFRNKESKATCDLSSWSNPYFKRKAQIPFSFSRYLLKYLF 435
+W AF SF ++K T L S +PYF IP+ + L + F
Sbjct: 655 DWAAFRGWSFTRLKTKETPSLGSGFDPYFVYSGSIPYLDGTFYLNHTF 702
>emb|CAA76708.1| hexon protein [Human adenovirus type 17]
Length = 325
Score = 29.6 bits (65), Expect = 8.5
Identities = 18/61 (29%), Positives = 27/61 (43%), Gaps = 1/61 (1%)
Frame = +1
Query: 256 ARVGHQKLSYHLLEWKAFPS-SFRNKESKATCDLSSWSNPYFKRKAQIPFSFSRYLLKYL 432
A+ + +S W AF SF ++K T L S +PYF IP+ + L +
Sbjct: 43 AKATNVPISIPSRNWAAFAGWSFTRLKTKETPSLGSGFDPYFVYSGSIPYLDGTFYLNHT 102
Query: 433 F 435
F
Sbjct: 103 F 103
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 121
effective length of database: 268,435,184
effective search space used: 6442444416
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)