BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= orf113.f
         (342 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_085574.1|  orf113 [Arabidopsis thaliana]|gi|1785775|e...   228   1e-59
gb|AAM93468.1|  hypothetical protein [Oryza sativa (japonica...    30   5.8  
gb|AAG17902.1|AF297709_1  telomerase regulation-associated p...    30   9.9  

>ref|NP_085574.1| orf113 [Arabidopsis thaliana]|gi|1785775|emb|CAA69805.1| orf113
           [Arabidopsis thaliana]
          Length = 113

 Score =  228 bits (582), Expect = 1e-59
 Identities = 113/113 (100%), Positives = 113/113 (100%)
 Frame = +1

Query: 1   MKRYATMLSEFTGVVPSTFLSKLFLKCEINLSIGRVQDRKEPYRQAKSAVRLHGLNNTQY 180
           MKRYATMLSEFTGVVPSTFLSKLFLKCEINLSIGRVQDRKEPYRQAKSAVRLHGLNNTQY
Sbjct: 1   MKRYATMLSEFTGVVPSTFLSKLFLKCEINLSIGRVQDRKEPYRQAKSAVRLHGLNNTQY 60

Query: 181 CTGRIRFAARSIPQSPLVPFRLFPQFPTPSVRQNLTTLHFDTREEDRALVSSG 339
           CTGRIRFAARSIPQSPLVPFRLFPQFPTPSVRQNLTTLHFDTREEDRALVSSG
Sbjct: 61  CTGRIRFAARSIPQSPLVPFRLFPQFPTPSVRQNLTTLHFDTREEDRALVSSG 113



>gb|AAM93468.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 181

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/43 (27%), Positives = 24/43 (54%)
 Frame = +3

Query: 9   VCHNAIRVHRCRSVYFSFQTFSKVRNKPINW*STRSKRTL*AG 137
           +CH+A+ +HRCR  + +   ++ +  K + W   + + T  AG
Sbjct: 99  LCHHALLLHRCRMRWIAVPGYTPLDLKDVTWNMAKMRVTSVAG 141



>gb|AAG17902.1|AF297709_1 telomerase regulation-associated protein [Homo
           sapiens]|gi|19923566|ref|NP_065731.2| SCY1-like 1;
           telomerase regulation-associated protein; HT019 protein;
           telomerase regulation-associated protein; hypothetical
           gene supported by AB047077; AB051427; AB051428;
           AF297709; BC009967; NM_020680; likely ortholog of mouse
           N-terminal kinase-like protein; N-terminal kinase-like
           protein; teratoma-associated tyrosine kinase; N-terminal
           kinase-like [Homo sapiens]
          Length = 786

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 15/37 (40%), Positives = 22/37 (58%)
 Frame = +1

Query: 211 SIPQSPLVPFRLFPQFPTPSVRQNLTTLHFDTREEDR 321
           +IPQ P +     PQ PTP      T+ H++T+EED+
Sbjct: 596 NIPQRPTLK-EFLPQPPTPVPATPTTSGHWETQEEDK 631



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 89
effective length of database: 311,562,000
effective search space used: 7477488000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)