BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orf294.f
(885 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_085572.1| orf294 [Arabidopsis thaliana]|gi|1785773|e... 526 e-148
ref|NP_178788.1| hypothetical protein; protein id: At2g0769... 486 e-136
ref|NP_064094.1| orf245 [Beta vulgaris]|gi|9087343|dbj|BAA9... 63 5e-09
ref|NP_085527.1| orf275 [Arabidopsis thaliana]|gi|1785728|e... 56 8e-07
gb|AAB23686.1| orf224 [Brassica napus]|gi|167121|gb|AAA3298... 46 8e-04
>ref|NP_085572.1| orf294 [Arabidopsis thaliana]|gi|1785773|emb|CAA69803.1| orf294
[Arabidopsis thaliana]
Length = 294
Score = 526 bits (1354), Expect = e-148
Identities = 265/294 (90%), Positives = 265/294 (90%)
Frame = +1
Query: 1 MITRLFAQLVSLSIVTYWNDAIVATNFSWLXXXXXXXXXXXXXXSRYFKKPIIWTLYFFL 180
MITRLFAQLVSLSIVTYWNDAIVATNFSWL SRYFKKPIIWTLYFFL
Sbjct: 1 MITRLFAQLVSLSIVTYWNDAIVATNFSWLFITFFVMTFTFRTFSRYFKKPIIWTLYFFL 60
Query: 181 CLIAFLLLWAARIHINILFSFAFGDVYSFFMAGVFLFYGFGELLPIGSDSDVGEASWVVN 360
CLIAFLLLWAARIHINILFSFAFGDVYSFFMAGVFLFYGFGELLPIGSDSDVGEASWVVN
Sbjct: 61 CLIAFLLLWAARIHINILFSFAFGDVYSFFMAGVFLFYGFGELLPIGSDSDVGEASWVVN 120
Query: 361 PATGASGSGGNGWTESAANDPAREVSLAPFPPQLTHPVPFXXXXXXXXXXXXXXXIASFY 540
PATGASGSGGNGWTESAANDPAREVSLAPFPPQLTHPVPF IASFY
Sbjct: 121 PATGASGSGGNGWTESAANDPAREVSLAPFPPQLTHPVPFPAEPGSPDPVSPPPPIASFY 180
Query: 541 SRIERAESLHAGNIELAEDLQRIQEMERNLENERSPYRGRELAARIDWEVRELEGKVARN 720
SRIERAESLHAGNIELAEDLQRIQEMERNLENERSPYRGRELAARIDWEVRELEGKVARN
Sbjct: 181 SRIERAESLHAGNIELAEDLQRIQEMERNLENERSPYRGRELAARIDWEVRELEGKVARN 240
Query: 721 RAWDMVRDAQLDIWRQGLDQELVRQQENESRLEERRFQSHSTNSLFEADSSRDN 882
RAWDMVRDAQLDIWRQGLDQELVRQQENESRLEERRFQSHSTNSLFEADSSRDN
Sbjct: 241 RAWDMVRDAQLDIWRQGLDQELVRQQENESRLEERRFQSHSTNSLFEADSSRDN 294
>ref|NP_178788.1| hypothetical protein; protein id: At2g07698.1 [Arabidopsis
thaliana]|gi|20198280|gb|AAM15496.1| hypothetical
protein [Arabidopsis thaliana]
Length = 777
Score = 486 bits (1250), Expect = e-136
Identities = 248/288 (86%), Positives = 251/288 (87%)
Frame = +1
Query: 1 MITRLFAQLVSLSIVTYWNDAIVATNFSWLXXXXXXXXXXXXXXSRYFKKPIIWTLYFFL 180
MITRLFAQLVSLSIVTYWNDAIVATNFSWL SRYFKKPIIWT YFFL
Sbjct: 1 MITRLFAQLVSLSIVTYWNDAIVATNFSWLFITFFVMTFTFRTFSRYFKKPIIWTFYFFL 60
Query: 181 CLIAFLLLWAARIHINILFSFAFGDVYSFFMAGVFLFYGFGELLPIGSDSDVGEASWVVN 360
CLIAFLLLWAARIHINILFSFAFGDVYSFFMAGVFLFYGFGELLPIGSDSDVGEASWVVN
Sbjct: 61 CLIAFLLLWAARIHINILFSFAFGDVYSFFMAGVFLFYGFGELLPIGSDSDVGEASWVVN 120
Query: 361 PATGASGSGGNGWTESAANDPAREVSLAPFPPQLTHPVPFXXXXXXXXXXXXXXXIASFY 540
PATGASGSGGNGWTESAANDPAREVSLAPFP QLTHPVPF IASFY
Sbjct: 121 PATGASGSGGNGWTESAANDPAREVSLAPFPLQLTHPVPFPAEPGSPDPVSPPPPIASFY 180
Query: 541 SRIERAESLHAGNIELAEDLQRIQEMERNLENERSPYRGRELAARIDWEVRELEGKVARN 720
SRIERAESLHAGNIELAEDLQRIQEMERNLENERSPYRGRELAARIDWEVRELEGKVARN
Sbjct: 181 SRIERAESLHAGNIELAEDLQRIQEMERNLENERSPYRGRELAARIDWEVRELEGKVARN 240
Query: 721 RAWDMVRDAQLDIWRQGLDQELVRQQENESRLEERRFQSHSTNSLFEA 864
RAWDMVRDAQLDIWRQGLDQELVRQQENESRLEERR + +LFE+
Sbjct: 241 RAWDMVRDAQLDIWRQGLDQELVRQQENESRLEERR--AAELTNLFES 286
>ref|NP_064094.1| orf245 [Beta vulgaris]|gi|9087343|dbj|BAA99487.1| orf245 [Beta
vulgaris]
Length = 245
Score = 63.2 bits (152), Expect = 5e-09
Identities = 37/96 (38%), Positives = 59/96 (60%), Gaps = 2/96 (2%)
Frame = +1
Query: 529 ASFYSRIERAESLHAGNIELAEDLQRIQEMERNLE--NERSPYRGRELAARIDWEVRELE 702
+S + +IE ++SL A N +LAE L+R+QE NLE NE P R RE ++ EV+ELE
Sbjct: 149 SSLHEQIESSDSLRARNRQLAEHLERVQEEILNLEIENEEDPTRRRERVEHLNREVQELE 208
Query: 703 GKVARNRAWDMVRDAQLDIWRQGLDQELVRQQENES 810
+V N+ D R Q+ + ++GL ++ +Q + +S
Sbjct: 209 RQVEINKTRDAQRAHQISLLQEGLGEQDRKQGDQQS 244
>ref|NP_085527.1| orf275 [Arabidopsis thaliana]|gi|1785728|emb|CAA69751.1| orf275
[Arabidopsis thaliana]
Length = 275
Score = 55.8 bits (133), Expect = 8e-07
Identities = 27/59 (45%), Positives = 40/59 (67%)
Frame = +1
Query: 538 YSRIERAESLHAGNIELAEDLQRIQEMERNLENERSPYRGRELAARIDWEVRELEGKVA 714
Y IE + S+ A ++EL +D++R+Q + RN +N P R E+AAR+D EVREL+ K A
Sbjct: 205 YGEIESSASVRARDLELEKDIKRVQRLTRNFDNAEDPARRLEVAARLDPEVRELDQKWA 263
>gb|AAB23686.1| orf224 [Brassica napus]|gi|167121|gb|AAA32982.1| Chimeric protein
ORF224 (putative)|gi|81697|pir||JQ1512 hypothetical
26.2K protein (atp6 5' region) - rape mitochondrion
Length = 224
Score = 45.8 bits (107), Expect = 8e-04
Identities = 25/71 (35%), Positives = 40/71 (56%)
Frame = +1
Query: 538 YSRIERAESLHAGNIELAEDLQRIQEMERNLENERSPYRGRELAARIDWEVRELEGKVAR 717
Y+ +E ++S A N ++ L+R+QE+ + LE ER R + L + WEVR L+
Sbjct: 142 YADVESSDSQQARNNDMYAHLRRVQEITQKLEGERDIVRRQALLDIMKWEVRSLQEHFRI 201
Query: 718 NRAWDMVRDAQ 750
R D +RD+Q
Sbjct: 202 FRHLDRLRDSQ 212
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 122
effective length of database: 267,087,471
effective search space used: 45939045012
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)