BLAST Search Results

BLASTX 1.4.13-Paracel [2002-12-12] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= atp1.f (1524 letters) Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 1,347,713 sequences; 431,508,457 total letters Searching...................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_085571.2|  ATPase subunit 1 [Arabidopsis thaliana]|gi...   981   0.0  
sp|P23413|ATP0_RAPSA  ATP synthase alpha chain, mitochondria...   977   0.0  
sp|P22201|ATP0_BRANA  ATP synthase alpha chain, mitochondria...   975   0.0  
ref|NP_178788.1|  hypothetical protein; protein id: At2g0769...   969   0.0  
sp|P92549|ATP0_ARATH  ATP synthase alpha chain, mitochondrial     967   0.0

>ref|NP_085571.2| ATPase subunit 1 [Arabidopsis thaliana]|gi|15215921|emb|CAA69802.3|
            ATPase subunit 1 [Arabidopsis thaliana]
          Length = 507

 Score =  981 bits (2536), Expect = 0.0
 Identities = 507/507 (100%), Positives = 507/507 (100%)
 Frame = +1

Query: 1    MELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANG 180
            MELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANG
Sbjct: 1    MELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANG 60

Query: 181  VKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGK 360
            VKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGK
Sbjct: 61   VKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGK 120

Query: 361  GALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGGRQTGKTTI 540
            GALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGGRQTGKTTI
Sbjct: 121  GALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGGRQTGKTTI 180

Query: 541  AIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATAS 720
            AIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATAS
Sbjct: 181  AIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATAS 240

Query: 721  DPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGD 900
            DPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGD
Sbjct: 241  DPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGD 300

Query: 901  VFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELF 1080
            VFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELF
Sbjct: 301  VFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELF 360

Query: 1081 YRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQAL 1260
            YRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQAL
Sbjct: 361  YRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQAL 420

Query: 1261 LNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELL 1440
            LNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELL
Sbjct: 421  LNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELL 480

Query: 1441 QALKGGLTNERKMEPDAFLKERALALI 1521
            QALKGGLTNERKMEPDAFLKERALALI
Sbjct: 481  QALKGGLTNERKMEPDAFLKERALALI 507

>sp|P23413|ATP0_RAPSA ATP synthase alpha chain, mitochondrial|gi|3342502|gb|AAC78472.1| ATP
            synthase alpha subunit [Brassica
            rapa]|gi|81715|pir||S12309 H+-transporting two-sector
            ATPase (EC 3.6.3.14) alpha chain - radish mitochondrion
          Length = 507

 Score =  977 bits (2526), Expect = 0.0
 Identities = 505/507 (99%), Positives = 506/507 (99%)
 Frame = +1

Query: 1    MELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANG 180
            MELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANG
Sbjct: 1    MELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANG 60

Query: 181  VKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGK 360
            VKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDG+
Sbjct: 61   VKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGR 120

Query: 361  GALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGGRQTGKTTI 540
            GALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIG RQTGKTTI
Sbjct: 121  GALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGDRQTGKTTI 180

Query: 541  AIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATAS 720
            AIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATAS
Sbjct: 181  AIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATAS 240

Query: 721  DPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGD 900
            DPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGD
Sbjct: 241  DPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGD 300

Query: 901  VFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELF 1080
            VFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELF
Sbjct: 301  VFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELF 360

Query: 1081 YRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQAL 1260
            YRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQAL
Sbjct: 361  YRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQAL 420

Query: 1261 LNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELL 1440
            LNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELL
Sbjct: 421  LNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELL 480

Query: 1441 QALKGGLTNERKMEPDAFLKERALALI 1521
            QALKGGLTNERKMEPDAFLKERALALI
Sbjct: 481  QALKGGLTNERKMEPDAFLKERALALI 507

>sp|P22201|ATP0_BRANA ATP synthase alpha chain, mitochondrial|gi|19554|emb|CAA39483.1|
            F1-ATPase alpha subunit (ATPA) [Brassica
            napus]|gi|67818|pir||PWRPA H+-transporting two-sector
            ATPase (EC 3.6.3.14) alpha chain - rape mitochondrion
          Length = 507

 Score =  975 bits (2521), Expect = 0.0
 Identities = 504/507 (99%), Positives = 505/507 (99%)
 Frame = +1

Query: 1    MELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANG 180
            MELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANG
Sbjct: 1    MELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANG 60

Query: 181  VKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGK 360
            VKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDG+
Sbjct: 61   VKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGR 120

Query: 361  GALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGGRQTGKTTI 540
            GALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIG RQTGKTTI
Sbjct: 121  GALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGDRQTGKTTI 180

Query: 541  AIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATAS 720
            AIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATAS
Sbjct: 181  AIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATAS 240

Query: 721  DPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGD 900
            DPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGD
Sbjct: 241  DPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGD 300

Query: 901  VFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELF 1080
            VFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELF
Sbjct: 301  VFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELF 360

Query: 1081 YRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQAL 1260
            YRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQAL
Sbjct: 361  YRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQAL 420

Query: 1261 LNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELL 1440
            LNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELL
Sbjct: 421  LNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELL 480

Query: 1441 QALKGGLTNERKMEPDAFLKERALALI 1521
            QALKGGLTNERKMEPDAFLKERAL LI
Sbjct: 481  QALKGGLTNERKMEPDAFLKERALRLI 507

>ref|NP_178788.1| hypothetical protein; protein id: At2g07698.1 [Arabidopsis
            thaliana]|gi|20198280|gb|AAM15496.1| hypothetical protein
            [Arabidopsis thaliana]
          Length = 777

 Score =  969 bits (2504), Expect = 0.0
 Identities = 501/502 (99%), Positives = 501/502 (99%)
 Frame = +1

Query: 16   RAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMA 195
            RAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMA
Sbjct: 276  RAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMA 335

Query: 196  LNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSD 375
            LNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSD
Sbjct: 336  LNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSD 395

Query: 376  HEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGGRQTGKTTIAIDTI 555
            HEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIG RQTGKTTIAIDTI
Sbjct: 396  HEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGDRQTGKTTIAIDTI 455

Query: 556  LNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATASDPAPL 735
            LNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATASDPAPL
Sbjct: 456  LNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATASDPAPL 515

Query: 736  QFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLH 915
            QFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLH
Sbjct: 516  QFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLH 575

Query: 916  SRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIR 1095
            SRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIR
Sbjct: 576  SRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIR 635

Query: 1096 PAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGA 1275
            PAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGA
Sbjct: 636  PAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGA 695

Query: 1276 RLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELLQALKG 1455
            RLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELLQALKG
Sbjct: 696  RLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELLQALKG 755

Query: 1456 GLTNERKMEPDAFLKERALALI 1521
            GLTNERKMEPDAFLKERALALI
Sbjct: 756  GLTNERKMEPDAFLKERALALI 777

>sp|P92549|ATP0_ARATH ATP synthase alpha chain, mitochondrial
          Length = 507

 Score =  967 bits (2500), Expect = 0.0
 Identities = 503/507 (99%), Positives = 503/507 (99%)
 Frame = +1

Query: 1    MELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANG 180
            MELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANG
Sbjct: 1    MELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANG 60

Query: 181  VKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGK 360
            VKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGK
Sbjct: 61   VKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGK 120

Query: 361  GALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGGRQTGKTTI 540
            GALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGGRQTGKTTI
Sbjct: 121  GALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGGRQTGKTTI 180

Query: 541  AIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATAS 720
            AIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATAS
Sbjct: 181  AIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATAS 240

Query: 721  DPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGD 900
            DPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGD
Sbjct: 241  DPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGD 300

Query: 901  VFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELF 1080
            VFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELF
Sbjct: 301  VFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELF 360

Query: 1081 YRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQAL 1260
            YRGIRPAINVGLSVSRVGSAAQLKAMKQVCGS KLELAQYREVAAFAQFGSDLDAATQAL
Sbjct: 361  YRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQAL 420

Query: 1261 LNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELL 1440
            LNRGARLTEV KQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAI NSVKPELL
Sbjct: 421  LNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAILNSVKPELL 480

Query: 1441 QALKGGLTNERKMEPDAFLKERALALI 1521
            QALKGGLTNERKME DAFLKERALALI
Sbjct: 481  QALKGGLTNERKMELDAFLKERALALI 507

  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 127
effective length of database: 260,348,906
effective search space used: 98932584280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLAST Search Results