BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= orf111b.f
         (336 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_085570.1|  orf111b [Arabidopsis thaliana]|gi|1785771|...   197   2e-50
pir||E82064  conserved hypothetical protein VC2547 [imported...    32   2.6  
gb|AAL92328.1|  Cytohesin 3 [Dictyostelium discoideum]             30   10.0 
gb|AAA19934.1|  hemagglutinin                                      30   10.0 

>ref|NP_085570.1| orf111b [Arabidopsis thaliana]|gi|1785771|emb|CAA69801.1| orf111b
           [Arabidopsis thaliana]
          Length = 111

 Score =  197 bits (502), Expect = 2e-50
 Identities = 99/111 (89%), Positives = 99/111 (89%)
 Frame = +1

Query: 1   MMTLFTQEPSFSIKCLPTTPSKPHXXXXXXXXXXXXISDFSCRCPKIKLSLKGYRFIYCV 180
           MMTLFTQEPSFSIKCLPTTPSKPH            ISDFSCRCPKIKLSLKGYRFIYCV
Sbjct: 1   MMTLFTQEPSFSIKCLPTTPSKPHRSLLAARLLFLSISDFSCRCPKIKLSLKGYRFIYCV 60

Query: 181 RVVPSPSSLAKAQSDRLNIGLIRRSLKLCCARDIRLELGQVLISIPLLLFL 333
           RVVPSPSSLAKAQSDRLNIGLIRRSLKLCCARDIRLELGQVLISIPLLLFL
Sbjct: 61  RVVPSPSSLAKAQSDRLNIGLIRRSLKLCCARDIRLELGQVLISIPLLLFL 111



>pir||E82064 conserved hypothetical protein VC2547 [imported] - Vibrio cholerae
           (strain N16961 serogroup O1)|gi|9657131|gb|AAF95688.1|
           conserved hypothetical protein [Vibrio
           cholerae]|gi|15642542|ref|NP_232175.1| conserved
           hypothetical protein [Vibrio cholerae]
          Length = 1254

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 300 LSQLKPDIPGTTEFETSPDKPDIEPI 223
           LS +K D+P   E E +PD+PD EP+
Sbjct: 106 LSGVKLDLPSLAESEPAPDEPDSEPL 131



>gb|AAL92328.1| Cytohesin 3 [Dictyostelium discoideum]
          Length = 931

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 11/21 (52%), Positives = 16/21 (75%)
 Frame = -1

Query: 153 ERKLYFWASTGEVAYGKKQKP 91
           E+K+YFW S  E  YG++Q+P
Sbjct: 562 EKKVYFWDSAVEKFYGEQQQP 582



>gb|AAA19934.1| hemagglutinin
          Length = 566

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 15/39 (38%), Positives = 18/39 (45%)
 Frame = -1

Query: 189 HHPNAVNEAISLERKLYFWASTGEVAYGKKQKPSC*QRP 73
           HHP+  NE  SL +    +   G   Y KK KP    RP
Sbjct: 197 HHPSTSNEQQSLYQNADTYVFVGSSKYNKKFKPEIATRP 235



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 87
effective length of database: 314,257,426
effective search space used: 7542178224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)