BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rpsl2.f
(378 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178773.1| hypothetical protein; protein id: At2g0767... 261 2e-69
dbj|BAA02857.1| ribosomal protein S12 [Brassica napus]|gi|7... 254 1e-67
gb|AAB18651.1| ribosomal protein S12|gi|1171199|gb|AAB18649... 250 3e-66
emb|CAA65515.1| ribosomal protein S12 [Nicotiana sylvestris... 245 1e-64
gb|AAA80309.1| ribosomal protein S12|gi|1046303|gb|AAB82732... 244 1e-64
>ref|NP_178773.1| hypothetical protein; protein id: At2g07675.1 [Arabidopsis
thaliana]|gi|26557001|ref|NP_085552.2| ribosomal protein
L2 [Arabidopsis thaliana]|gi|20198302|gb|AAM15516.1|
hypothetical protein [Arabidopsis
thaliana]|gi|15215918|emb|CAA69838.3| ribosomal protein
L2 [Arabidopsis thaliana]|gi|20198132|gb|AAM15421.1|
hypothetical protein [Arabidopsis thaliana]
Length = 125
Score = 261 bits (666), Expect = 2e-69
Identities = 125/125 (100%), Positives = 125/125 (100%)
Frame = +1
Query: 1 MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 180
MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1 MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60
Query: 181 HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAE 360
HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAE
Sbjct: 61 HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAE 120
Query: 361 KPKSI 375
KPKSI
Sbjct: 121 KPKSI 125
>dbj|BAA02857.1| ribosomal protein S12 [Brassica napus]|gi|7440369|pir||T09502
ribosomal protein S12 - rape
mitochondrion|gi|1351022|sp|P48857|RT12_BRANA
MITOCHONDRIAL RIBOSOMAL PROTEIN S12
Length = 125
Score = 254 bits (650), Expect = 1e-67
Identities = 122/125 (97%), Positives = 122/125 (97%)
Frame = +1
Query: 1 MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 180
MPTFNQLIRHGREEKRRTDRTRALDKCPQK G CPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1 MPTFNQLIRHGREEKRRTDRTRALDKCPQKLGACPRVSTRTPKKPNSAPRKIAKVRLSNR 60
Query: 181 HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAE 360
HDIFAHIPGEGHNSQEHS VLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAE
Sbjct: 61 HDIFAHIPGEGHNSQEHSQVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAE 120
Query: 361 KPKSI 375
KPKSI
Sbjct: 121 KPKSI 125
>gb|AAB18651.1| ribosomal protein S12|gi|1171199|gb|AAB18649.1| ribosomal protein
S12|gi|2129811|pir||S70001 ribosomal protein S12 -
radish mitochondrion|gi|1710795|sp|P50892|RT12_RAPSA
MITOCHONDRIAL RIBOSOMAL PROTEIN S12
Length = 125
Score = 250 bits (638), Expect = 3e-66
Identities = 120/125 (96%), Positives = 120/125 (96%)
Frame = +1
Query: 1 MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 180
MPT NQLIRHGREEKRRTDRTRALDKCPQK G CPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1 MPTLNQLIRHGREEKRRTDRTRALDKCPQKLGACPRVSTRTPKKPNSAPRKIAKVRLSNR 60
Query: 181 HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAE 360
HDIFAHIPGEGHNSQEHS VLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRR GRSKYGAE
Sbjct: 61 HDIFAHIPGEGHNSQEHSQVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRSGRSKYGAE 120
Query: 361 KPKSI 375
KPKSI
Sbjct: 121 KPKSI 125
>emb|CAA65515.1| ribosomal protein S12 [Nicotiana
sylvestris]|gi|2500451|sp|Q95869|RT12_NICSY
MITOCHONDRIAL RIBOSOMAL PROTEIN S12
Length = 125
Score = 245 bits (625), Expect = 1e-64
Identities = 118/125 (94%), Positives = 120/125 (95%)
Frame = +1
Query: 1 MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 180
MPT NQLIRHGREEKRRTDRTRALD+CPQK GVCPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1 MPTKNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60
Query: 181 HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAE 360
HDIFAHIPGEGHNSQEHS VLIRGGRVKDSPGVK HCIRGVKDL+GIP RRRGRSKYGAE
Sbjct: 61 HDIFAHIPGEGHNSQEHSMVLIRGGRVKDSPGVKFHCIRGVKDLLGIPDRRRGRSKYGAE 120
Query: 361 KPKSI 375
KPKSI
Sbjct: 121 KPKSI 125
>gb|AAA80309.1| ribosomal protein S12|gi|1046303|gb|AAB82732.1| ribosomal protein
S12 [Petunia x hybrida]|gi|1589661|prf||2211395A
ribosomal protein S12|gi|1256948|gb|AAA96604.1| rps12
gene product|gi|7440357|pir||JC6098 ribosomal protein
S12 - petunia
mitochondrion|gi|1351025|sp|P49195|RT12_PETHY
Mitochondrial ribosomal protein S12
Length = 125
Score = 244 bits (624), Expect = 1e-64
Identities = 117/125 (93%), Positives = 120/125 (95%)
Frame = +1
Query: 1 MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 180
MP+ NQLIRHGREEKRRTDRTRALD+CPQK GVCPRVSTRTPKKPNSAPRKIAKVRLSNR
Sbjct: 1 MPSLNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60
Query: 181 HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAE 360
HDIFAHIPGEGHN QEHS VLIRGGRVKDSPGVKSHCIRGVKDL+GIP RRRGRSKYGAE
Sbjct: 61 HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAE 120
Query: 361 KPKSI 375
KPKSI
Sbjct: 121 KPKSI 125
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 101
effective length of database: 295,389,444
effective search space used: 7089346656
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)