BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rps3.f
(1671 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA69755.3| ribosomal protein S3 [Arabidopsis thaliana]... 1026 0.0
dbj|BAA12250.1| ribosomal protein S3 [Arabidopsis thaliana] 979 0.0
sp|P49386|RT03_BRANA MITOCHONDRIAL RIBOSOMAL PROTEIN S3 950 0.0
pir||S36913 ribosomal protein S3 - rape mitochondrion 949 0.0
emb|CAA45192.1| ribosomal protein S3 [Brassica napus] 913 0.0
>emb|CAA69755.3| ribosomal protein S3 [Arabidopsis
thaliana]|gi|13449298|ref|NP_085481.1| ribosomal protein
S3 [Arabidopsis thaliana]
Length = 556
Score = 1026 bits (2653), Expect = 0.0
Identities = 519/556 (93%), Positives = 519/556 (93%)
Frame = +1
Query: 1 MARKGNPISVRLGKNRSSDSSRFSEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRC 180
MARKGNPISVRLGKNRSSDSSRFSEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRC
Sbjct: 1 MARKGNPISVRLGKNRSSDSSRFSEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRC 60
Query: 181 IILHFPKRTFIHFFXXXXXXXXXXXXXXXXGKEKGRWWTTFGKAGPIECLHSSDDTEEER 360
IILHFPKRTFIHFF GKEKGRWWTTFGKAGPIECLHSSDDTEEER
Sbjct: 61 IILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEER 120
Query: 361 NEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFK 540
NEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFK
Sbjct: 121 NEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFK 180
Query: 541 HPKYAGVVNDIAFLIENDDSXXXXXXXXXXXQNKSRSDGPTSYLRTLPAVRPSLNFLVMQ 720
HPKYAGVVNDIAFLIENDDS QNKSRSDGPTSYLRTLPAVRPSLNFLVMQ
Sbjct: 181 HPKYAGVVNDIAFLIENDDSFKKTKLFKLFFQNKSRSDGPTSYLRTLPAVRPSLNFLVMQ 240
Query: 721 YFFNTKNQINFDPVVVLNHFVAPGAAEPSTMGRANAQGRSLQKRIRSRIAFFVESSTSEK 900
YFFNTKNQINFDPVVVLNHFVAPGAAEPSTMGRANAQGRSLQKRIRSRIAFFVESSTSEK
Sbjct: 241 YFFNTKNQINFDPVVVLNHFVAPGAAEPSTMGRANAQGRSLQKRIRSRIAFFVESSTSEK 300
Query: 901 KCLAEAKNRLTHFIRLANDLRFAGTTKTTISLXXXXXXXXXXLRDGVGVYNNLDAREQLL 1080
KCLAEAKNRLTHFIRLANDLRFAGTTKTTISL LRDGVGVYNNLDAREQLL
Sbjct: 301 KCLAEAKNRLTHFIRLANDLRFAGTTKTTISLFPFFGATFFFLRDGVGVYNNLDAREQLL 360
Query: 1081 NQLRVKCWNLVGKDKIMELIEKLKNLGGIEELIKVIDMMIEIILRKRGIPYRYNSYFYEV 1260
NQLRVKCWNLVGKDKIMELIEKLKNLGGIEELIKVIDMMIEIILRKRGIPYRYNSYFYEV
Sbjct: 361 NQLRVKCWNLVGKDKIMELIEKLKNLGGIEELIKVIDMMIEIILRKRGIPYRYNSYFYEV 420
Query: 1261 KKMRSFLSNRTNTKTLIESVKIKSVYQSASPIAQDISFQLKNKRRSFHSIFAKIVKEIPK 1440
KKMRSFLSNRTNTKTLIESVKIKSVYQSASPIAQDISFQLKNKRRSFHSIFAKIVKEIPK
Sbjct: 421 KKMRSFLSNRTNTKTLIESVKIKSVYQSASPIAQDISFQLKNKRRSFHSIFAKIVKEIPK 480
Query: 1441 GVEGIRICFSGRLKDAAEKAQTKCYKHRKTSRNVFNHKIDYAPAEVSTRYGISGVKVWIS 1620
GVEGIRICFSGRLKDAAEKAQTKCYKHRKTSRNVFNHKIDYAPAEVSTRYGISGVKVWIS
Sbjct: 481 GVEGIRICFSGRLKDAAEKAQTKCYKHRKTSRNVFNHKIDYAPAEVSTRYGISGVKVWIS 540
Query: 1621 YSQKKGRRAISETYEI 1668
YSQKKGRRAISETYEI
Sbjct: 541 YSQKKGRRAISETYEI 556
>dbj|BAA12250.1| ribosomal protein S3 [Arabidopsis thaliana]
Length = 531
Score = 979 bits (2530), Expect = 0.0
Identities = 494/531 (93%), Positives = 494/531 (93%)
Frame = +1
Query: 76 YYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFXXXXXXXXXXX 255
YYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFF
Sbjct: 1 YYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRR 60
Query: 256 XXXXXGKEKGRWWTTFGKAGPIECLHSSDDTEEERNEVRGRGARKRVESIRLDDRKKQNE 435
GKEKGRWWTTFGKAGPIECLHSSDDTEEERNEVRGRGARKRVESIRLDDRKKQNE
Sbjct: 61 EKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEERNEVRGRGARKRVESIRLDDRKKQNE 120
Query: 436 IRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFKHPKYAGVVNDIAFLIENDDSXXXXX 615
IRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFKHPKYAGVVNDIAFLIENDDS
Sbjct: 121 IRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFKHPKYAGVVNDIAFLIENDDSFKKTK 180
Query: 616 XXXXXXQNKSRSDGPTSYLRTLPAVRPSLNFLVMQYFFNTKNQINFDPVVVLNHFVAPGA 795
QNKSRSDGPTSYLRTLPAVRPSLNFLVMQYFFNTKNQINFDPVVVLNHFVAPGA
Sbjct: 181 LFKLFFQNKSRSDGPTSYLRTLPAVRPSLNFLVMQYFFNTKNQINFDPVVVLNHFVAPGA 240
Query: 796 AEPSTMGRANAQGRSLQKRIRSRIAFFVESSTSEKKCLAEAKNRLTHFIRLANDLRFAGT 975
AEPSTMGRANAQGRSLQKRIRSRIAFFVESSTSEKKCLAEAKNRLTHFIRLANDLRFAGT
Sbjct: 241 AEPSTMGRANAQGRSLQKRIRSRIAFFVESSTSEKKCLAEAKNRLTHFIRLANDLRFAGT 300
Query: 976 TKTTISLXXXXXXXXXXLRDGVGVYNNLDAREQLLNQLRVKCWNLVGKDKIMELIEKLKN 1155
TKTTISL LRDGVGVYNNLDAREQLLNQLRVKCWNLVGKDKIMELIEKLKN
Sbjct: 301 TKTTISLFPFFGATFFFLRDGVGVYNNLDAREQLLNQLRVKCWNLVGKDKIMELIEKLKN 360
Query: 1156 LGGIEELIKVIDMMIEIILRKRGIPYRYNSYFYEVKKMRSFLSNRTNTKTLIESVKIKSV 1335
LGGIEELIKVIDMMIEIILRKRGIPYRYNSYFYEVKKMRSFLSNRTNTKTLIESVKIKSV
Sbjct: 361 LGGIEELIKVIDMMIEIILRKRGIPYRYNSYFYEVKKMRSFLSNRTNTKTLIESVKIKSV 420
Query: 1336 YQSASPIAQDISFQLKNKRRSFHSIFAKIVKEIPKGVEGIRICFSGRLKDAAEKAQTKCY 1515
YQSASPIAQDISFQLKNKRRSFHSIFAKIVKEIPKGVEGIRICFSGRLKDAAEKAQTKCY
Sbjct: 421 YQSASPIAQDISFQLKNKRRSFHSIFAKIVKEIPKGVEGIRICFSGRLKDAAEKAQTKCY 480
Query: 1516 KHRKTSRNVFNHKIDYAPAEVSTRYGISGVKVWISYSQKKGRRAISETYEI 1668
KHRKTSRNVFNHKIDYAPAEVSTRYGISGVKVWISYSQKKGRRAISETYEI
Sbjct: 481 KHRKTSRNVFNHKIDYAPAEVSTRYGISGVKVWISYSQKKGRRAISETYEI 531
>sp|P49386|RT03_BRANA MITOCHONDRIAL RIBOSOMAL PROTEIN S3
Length = 555
Score = 950 bits (2456), Expect = 0.0
Identities = 490/557 (87%), Positives = 496/557 (88%), Gaps = 1/557 (0%)
Frame = +1
Query: 1 MARKGNPISVRLGKNRSSDSSRFSEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRC 180
MARKGNPISVRLGKNRSSDSSRFSEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRC
Sbjct: 1 MARKGNPISVRLGKNRSSDSSRFSEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRC 60
Query: 181 IILHFPKRTFIHFFXXXXXXXXXXXXXXXXGKEKGRWWTTFGKAGPIECLHSSDDTEEER 360
I+LHFPKRTFIHFF GKEKGRWWTT GKAGPI CL DDTEEER
Sbjct: 61 ILLHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTPGKAGPIGCLR--DDTEEER 118
Query: 361 NEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFK 540
NEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDR PSIKKNLSKSLRISGAFK
Sbjct: 119 NEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDRTPSIKKNLSKSLRISGAFK 178
Query: 541 HPKYAGVVNDIAFLIENDDSXXXXXXXXXXXQNKSRSDGPTSYLRTLPAVRPSLNFLVMQ 720
HPKY GVVNDIAFLIENDDS KSRSDGPTSYLRTLPAV PSLNFLVMQ
Sbjct: 179 HPKYGGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSYLRTLPAVGPSLNFLVMQ 238
Query: 721 YFFNTKNQINFDPVVVLNHFVAPGAAEPSTMGRANAQG-RSLQKRIRSRIAFFVESSTSE 897
YFFNTKNQ+NFDPVVVLNHFVAPGAAEPSTMGRAN G RSLQKRIRSRIAFFVESSTSE
Sbjct: 239 YFFNTKNQMNFDPVVVLNHFVAPGAAEPSTMGRANGTGDRSLQKRIRSRIAFFVESSTSE 298
Query: 898 KKCLAEAKNRLTHFIRLANDLRFAGTTKTTISLXXXXXXXXXXLRDGVGVYNNLDAREQL 1077
KKCLAEAKNRLTH IRLANDL FAGTTKTTISL LRDGVGV NNLDAREQL
Sbjct: 299 KKCLAEAKNRLTHLIRLANDLGFAGTTKTTISLFPFFGATFFFLRDGVGVTNNLDAREQL 358
Query: 1078 LNQLRVKCWNLVGKDKIMELIEKLKNLGGIEELIKVIDMMIEIILRKRGIPYRYNSYFYE 1257
LNQLRVKCWNL+GKDK+MELIEK K+LGGIEELIKVIDMMIEIILRKRGIPY YNSYF E
Sbjct: 359 LNQLRVKCWNLLGKDKVMELIEKFKDLGGIEELIKVIDMMIEIILRKRGIPYGYNSYFNE 418
Query: 1258 VKKMRSFLSNRTNTKTLIESVKIKSVYQSASPIAQDISFQLKNKRRSFHSIFAKIVKEIP 1437
V+KMRSFLSNRTNTKTLIESVKIKSVYQSAS IAQDISFQLKNKRRS HSIFAKIVKEIP
Sbjct: 419 VQKMRSFLSNRTNTKTLIESVKIKSVYQSASLIAQDISFQLKNKRRSTHSIFAKIVKEIP 478
Query: 1438 KGVEGIRICFSGRLKDAAEKAQTKCYKHRKTSRNVFNHKIDYAPAEVSTRYGISGVKVWI 1617
K VEGIRICFSGRLKDAAEKAQTKCYKHRKTSRNVFN KIDYAPAEVSTRYGISGVKVWI
Sbjct: 479 KRVEGIRICFSGRLKDAAEKAQTKCYKHRKTSRNVFNQKIDYAPAEVSTRYGISGVKVWI 538
Query: 1618 SYSQKKGRRAISETYEI 1668
SYSQKKG RAISETYEI
Sbjct: 539 SYSQKKGGRAISETYEI 555
>pir||S36913 ribosomal protein S3 - rape mitochondrion
Length = 555
Score = 949 bits (2453), Expect = 0.0
Identities = 489/557 (87%), Positives = 496/557 (88%), Gaps = 1/557 (0%)
Frame = +1
Query: 1 MARKGNPISVRLGKNRSSDSSRFSEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRC 180
MARKGNPISVRLGKNRSSDSSRFS+YYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRC
Sbjct: 1 MARKGNPISVRLGKNRSSDSSRFSDYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRC 60
Query: 181 IILHFPKRTFIHFFXXXXXXXXXXXXXXXXGKEKGRWWTTFGKAGPIECLHSSDDTEEER 360
I+LHFPKRTFIHFF GKEKGRWWTT GKAGPI CL DDTEEER
Sbjct: 61 ILLHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTPGKAGPIGCLR--DDTEEER 118
Query: 361 NEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFK 540
NEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDR PSIKKNLSKSLRISGAFK
Sbjct: 119 NEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDRTPSIKKNLSKSLRISGAFK 178
Query: 541 HPKYAGVVNDIAFLIENDDSXXXXXXXXXXXQNKSRSDGPTSYLRTLPAVRPSLNFLVMQ 720
HPKY GVVNDIAFLIENDDS KSRSDGPTSYLRTLPAV PSLNFLVMQ
Sbjct: 179 HPKYGGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSYLRTLPAVGPSLNFLVMQ 238
Query: 721 YFFNTKNQINFDPVVVLNHFVAPGAAEPSTMGRANAQG-RSLQKRIRSRIAFFVESSTSE 897
YFFNTKNQ+NFDPVVVLNHFVAPGAAEPSTMGRAN G RSLQKRIRSRIAFFVESSTSE
Sbjct: 239 YFFNTKNQMNFDPVVVLNHFVAPGAAEPSTMGRANGTGDRSLQKRIRSRIAFFVESSTSE 298
Query: 898 KKCLAEAKNRLTHFIRLANDLRFAGTTKTTISLXXXXXXXXXXLRDGVGVYNNLDAREQL 1077
KKCLAEAKNRLTH IRLANDL FAGTTKTTISL LRDGVGV NNLDAREQL
Sbjct: 299 KKCLAEAKNRLTHLIRLANDLGFAGTTKTTISLFPFFGATFFFLRDGVGVTNNLDAREQL 358
Query: 1078 LNQLRVKCWNLVGKDKIMELIEKLKNLGGIEELIKVIDMMIEIILRKRGIPYRYNSYFYE 1257
LNQLRVKCWNL+GKDK+MELIEK K+LGGIEELIKVIDMMIEIILRKRGIPY YNSYF E
Sbjct: 359 LNQLRVKCWNLLGKDKVMELIEKFKDLGGIEELIKVIDMMIEIILRKRGIPYGYNSYFNE 418
Query: 1258 VKKMRSFLSNRTNTKTLIESVKIKSVYQSASPIAQDISFQLKNKRRSFHSIFAKIVKEIP 1437
V+KMRSFLSNRTNTKTLIESVKIKSVYQSAS IAQDISFQLKNKRRS HSIFAKIVKEIP
Sbjct: 419 VQKMRSFLSNRTNTKTLIESVKIKSVYQSASLIAQDISFQLKNKRRSTHSIFAKIVKEIP 478
Query: 1438 KGVEGIRICFSGRLKDAAEKAQTKCYKHRKTSRNVFNHKIDYAPAEVSTRYGISGVKVWI 1617
K VEGIRICFSGRLKDAAEKAQTKCYKHRKTSRNVFN KIDYAPAEVSTRYGISGVKVWI
Sbjct: 479 KRVEGIRICFSGRLKDAAEKAQTKCYKHRKTSRNVFNQKIDYAPAEVSTRYGISGVKVWI 538
Query: 1618 SYSQKKGRRAISETYEI 1668
SYSQKKG RAISETYEI
Sbjct: 539 SYSQKKGGRAISETYEI 555
>emb|CAA45192.1| ribosomal protein S3 [Brassica napus]
Length = 530
Score = 913 bits (2360), Expect = 0.0
Identities = 468/532 (87%), Positives = 474/532 (88%), Gaps = 1/532 (0%)
Frame = +1
Query: 76 YYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFXXXXXXXXXXX 255
YYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCI+LHFPKRTFIHFF
Sbjct: 1 YYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCILLHFPKRTFIHFFLPRRPRRLKRR 60
Query: 256 XXXXXGKEKGRWWTTFGKAGPIECLHSSDDTEEERNEVRGRGARKRVESIRLDDRKKQNE 435
GKEKGRWWTTFGKAGPI CL DDTEEERNEVRGRGARKRVESIRLDDRKKQNE
Sbjct: 61 EKTRPGKEKGRWWTTFGKAGPIGCLR--DDTEEERNEVRGRGARKRVESIRLDDRKKQNE 118
Query: 436 IRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFKHPKYAGVVNDIAFLIENDDSXXXXX 615
IRGWPKKKQRYGYHDR PSIKKNLSKSLRISGAFKHPKY GVVNDIAFLIENDDS
Sbjct: 119 IRGWPKKKQRYGYHDRTPSIKKNLSKSLRISGAFKHPKYGGVVNDIAFLIENDDSFRKTK 178
Query: 616 XXXXXXQNKSRSDGPTSYLRTLPAVRPSLNFLVMQYFFNTKNQINFDPVVVLNHFVAPGA 795
KSRSDGPTSYLRTLPAV PSLNFLVMQYFFNTKNQ+NFDPVVVLNHFVAPGA
Sbjct: 179 LFKFFFPKKSRSDGPTSYLRTLPAVGPSLNFLVMQYFFNTKNQMNFDPVVVLNHFVAPGA 238
Query: 796 AEPSTMGRANAQG-RSLQKRIRSRIAFFVESSTSEKKCLAEAKNRLTHFIRLANDLRFAG 972
AEPSTMGRAN G RSLQKRIRSRIAFFVESSTSEKKCLAEAKNRLTH IRLANDL FAG
Sbjct: 239 AEPSTMGRANGTGDRSLQKRIRSRIAFFVESSTSEKKCLAEAKNRLTHLIRLANDLGFAG 298
Query: 973 TTKTTISLXXXXXXXXXXLRDGVGVYNNLDAREQLLNQLRVKCWNLVGKDKIMELIEKLK 1152
TTKTTISL LRDGVGVYNNLDAREQLLNQLRVKCWNL+GKDK+MELIEK K
Sbjct: 299 TTKTTISLFPFFGATFFFLRDGVGVYNNLDAREQLLNQLRVKCWNLLGKDKVMELIEKFK 358
Query: 1153 NLGGIEELIKVIDMMIEIILRKRGIPYRYNSYFYEVKKMRSFLSNRTNTKTLIESVKIKS 1332
+LGGIEELIKVIDMMIEIILRKRGIPY YNSYF EV+KMRSFLSNRTNTKTLIESVKIKS
Sbjct: 359 DLGGIEELIKVIDMMIEIILRKRGIPYGYNSYFNEVQKMRSFLSNRTNTKTLIESVKIKS 418
Query: 1333 VYQSASPIAQDISFQLKNKRRSFHSIFAKIVKEIPKGVEGIRICFSGRLKDAAEKAQTKC 1512
VYQSAS IAQDISFQLKNKRRSFHSIFAKIVKEIPK VEGIRICFSGRLKDAAEKAQTKC
Sbjct: 419 VYQSASLIAQDISFQLKNKRRSFHSIFAKIVKEIPKRVEGIRICFSGRLKDAAEKAQTKC 478
Query: 1513 YKHRKTSRNVFNHKIDYAPAEVSTRYGISGVKVWISYSQKKGRRAISETYEI 1668
YKHRKTSRNVFN KIDYAPAEVSTRYGISGVKVWISYSQKKG RAISETYEI
Sbjct: 479 YKHRKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYSQKKGGRAISETYEI 530
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 128
effective length of database: 259,001,193
effective search space used: 110852510604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)