BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rps7-01.f
(5361 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA84445.1| ycf1 [Arabidopsis thaliana]|gi|6686164|sp|P... 3122 0.0
sp|P12222|YCF1_TOBAC Hypothetical 226 kDa protein ycf1 (ORF... 1616 0.0
ref|NP_783290.1| ycf1 protein [Atropa belladonna]|gi|200683... 1603 0.0
emb|CAB88792.1| ycf1 protein [Spinacia oleracea]|gi|1149758... 1486 0.0
sp|Q9BBN6|YCF1_LOTJA Hypothetical 214.8 kDa protein ycf1|gi... 1230 0.0
>dbj|BAA84445.1| ycf1 [Arabidopsis thaliana]|gi|6686164|sp|P56785|YCF1_ARATH
Hypothetical 213.7 kDa protein
ycf1|gi|7525093|ref|NP_051117.1| ycf1 [Arabidopsis
thaliana]
Length = 1786
Score = 3122 bits (8095), Expect = 0.0
Identities = 1581/1786 (88%), Positives = 1582/1786 (88%)
Frame = +1
Query: 1 VMVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEK 180
+MVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEK
Sbjct: 1 MMVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEK 60
Query: 181 KVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLXXXXXXXXXXXXDYGST 360
KVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLL DYGST
Sbjct: 61 KVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDYGST 120
Query: 361 TRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLI 540
TRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLI
Sbjct: 121 TRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLI 180
Query: 541 GHILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYL 720
GHILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYL
Sbjct: 181 GHILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYL 240
Query: 721 GRIPSPIFTKKLKGTSETGGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKD 900
GRIPSPIFTKKLKGTSETGGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKD
Sbjct: 241 GRIPSPIFTKKLKGTSETGGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKD 300
Query: 901 KINKDDEFHVRTYYNYKTVSENLYGNKENSNLEFFKIKKKEDHFLWFEKPFVTLVFDYKR 1080
KINKDDEFHVRTYYNYKTVSENLYGNKENSNLEFFKIKKKEDHFLWFEKPFVTLVFDYKR
Sbjct: 301 KINKDDEFHVRTYYNYKTVSENLYGNKENSNLEFFKIKKKEDHFLWFEKPFVTLVFDYKR 360
Query: 1081 WNRPNRYIKNDKIENIVRNEMSQYFFYTCQSDGKERISFTYPPNLSTFFEMIQKRIPSFT 1260
WNRPNRYIKNDKIENIVRNEMSQYFFYTCQSDGKERISFTYPPNLSTFFEMIQKRIPSFT
Sbjct: 361 WNRPNRYIKNDKIENIVRNEMSQYFFYTCQSDGKERISFTYPPNLSTFFEMIQKRIPSFT 420
Query: 1261 KEKKTFDQVSTYWSLIHEEKRENLKKEFLNRIEALDKEWSVENILEKTTRFCYNEAKKEY 1440
KEKKTFDQVSTYWSLIHEEKRENLKKEFLNRIEALDKEWSVENILEKTTRFCYNEAKKEY
Sbjct: 421 KEKKTFDQVSTYWSLIHEEKRENLKKEFLNRIEALDKEWSVENILEKTTRFCYNEAKKEY 480
Query: 1441 LPKIYDPFLHGISRGRIKKLPPFQIITETYRKNNLGGSWINKIHGLLLKINYKKFEQTIE 1620
LPKIYDPFLHGISRGRIKKLPPFQIITETYRKNNLGGSWINKIHGLLLKINYKKFEQTIE
Sbjct: 481 LPKIYDPFLHGISRGRIKKLPPFQIITETYRKNNLGGSWINKIHGLLLKINYKKFEQTIE 540
Query: 1621 KFNRKSLSIEKKLSFFSEPQQEEKINSEEEIKTFKFLFDIVRTDSNDQTLIKNFMDFPEI 1800
KFNRKSLSIEKKLSFFSEPQQEEKINSEEEIKTFKFLFDIVRTDSNDQTLIKNFMDFPEI
Sbjct: 541 KFNRKSLSIEKKLSFFSEPQQEEKINSEEEIKTFKFLFDIVRTDSNDQTLIKNFMDFPEI 600
Query: 1801 NKKVPRWSYKLISXXXXXXXXXXXXXXXXXXIRSRKAKRVVVFTDKEPHGEIYTNLKDNQ 1980
NKKVPRWSYKLIS IRSRKAKRVVVFTDKEPHGEIYTNLKDNQ
Sbjct: 601 NKKVPRWSYKLISELEELEGENEENVPMEPGIRSRKAKRVVVFTDKEPHGEIYTNLKDNQ 660
Query: 1981 NSDQNDEMALIRYSQQSDFRREIIKGSMRSQRRKTVIWEFFQAKVHSPLFFDRIDKLFFF 2160
NSDQNDEMALIRYSQQSDFRREIIKGSMRSQRRKTVIWEFFQAKVHSPLFFDRIDKLFFF
Sbjct: 661 NSDQNDEMALIRYSQQSDFRREIIKGSMRSQRRKTVIWEFFQAKVHSPLFFDRIDKLFFF 720
Query: 2161 SFDIWGLXXXXXXXXXXXXXXXXXEEEQSKXXXXXXXXXXXXWDSFLFAQIIRGSLLVTQ 2340
SFDIWGL EEEQSK WDSFLFAQIIRGSLLVTQ
Sbjct: 721 SFDIWGLKKKIIKNFIWKKKIDKKEEEQSKREETRRIEIAETWDSFLFAQIIRGSLLVTQ 780
Query: 2341 SXXXXXXXXXXXXXXKNSVRMLLFQFPEWSQDLKDWKREMHVKCTYNGVQLSETEFPRNW 2520
S KNSVRMLLFQFPEWSQDLKDWKREMHVKCTYNGVQLSETEFPRNW
Sbjct: 781 SILRKYIILPLLIIIKNSVRMLLFQFPEWSQDLKDWKREMHVKCTYNGVQLSETEFPRNW 840
Query: 2521 LTDGIQIKILFPFYLKPWHKSKFQASQKARLKKTKDKGEKNDFCFLTVWGMETELPFGSA 2700
LTDGIQIKILFPFYLKPWHKSKFQASQKARLKKTKDKGEKNDFCFLTVWGMETELPFGSA
Sbjct: 841 LTDGIQIKILFPFYLKPWHKSKFQASQKARLKKTKDKGEKNDFCFLTVWGMETELPFGSA 900
Query: 2701 QRKPSFFEPXXXXXXXXXXXXXXXXXXXXXXXXERAPIFLKVAKETKNWILKNFIFIKGI 2880
QRKPSFFEP ERAPIFLKVAKETKNWILKNFIFIKGI
Sbjct: 901 QRKPSFFEPISKELKKRIKKLKKKSFVVLKIFKERAPIFLKVAKETKNWILKNFIFIKGI 960
Query: 2881 SKRNLIPLFGPREIYELNEPKKDSIISNQMIHELSVQNKSLEWTNSSLSEKKIKNLIDRK 3060
SKRNLIPLFGPREIYELNEPKKDSIISNQMIHELSVQNKSLEWTNSSLSEKKIKNLIDRK
Sbjct: 961 SKRNLIPLFGPREIYELNEPKKDSIISNQMIHELSVQNKSLEWTNSSLSEKKIKNLIDRK 1020
Query: 3061 KTIRNQIEEISKEKQNLTNSCTKLRYDSKIIESSKKIWQTFKRKNTRLIRKSIFFFKFCI 3240
KTIRNQIEEISKEKQNLTNSCTKLRYDSKIIESSKKIWQTFKRKNTRLIRKSIFFFKFCI
Sbjct: 1021 KTIRNQIEEISKEKQNLTNSCTKLRYDSKIIESSKKIWQTFKRKNTRLIRKSIFFFKFCI 1080
Query: 3241 EQMSIAIFLGIINIPRITTQLFFESTKKILDKYIYXXXXXXXXXXXTLYFISTIKNLISN 3420
EQMSIAIFLGIINIPRITTQLFFESTKKILDKYIY TLYFISTIKNLISN
Sbjct: 1081 EQMSIAIFLGIINIPRITTQLFFESTKKILDKYIYKNEENGEKKKNTLYFISTIKNLISN 1140
Query: 3421 KKKMSYDLCSLSQAYVFYKLSQIKVSNFCKLKAVLEYNICITSFFVKNKIKVFFQEHGIF 3600
KKKMSYDLCSLSQAYVFYKLSQIKVSNFCKLKAVLEYNICITSFFVKNKIKVFFQEHGIF
Sbjct: 1141 KKKMSYDLCSLSQAYVFYKLSQIKVSNFCKLKAVLEYNICITSFFVKNKIKVFFQEHGIF 1200
Query: 3601 HYELKNKTFLNSEVNQWKNWLRSQYQYNLPQISWARLVTQNWKNKINKDSLVLNPSLTKE 3780
HYELKNKTFLNSEVNQWKNWLRSQYQYNLPQISWARLVTQNWKNKINKDSLVLNPSLTKE
Sbjct: 1201 HYELKNKTFLNSEVNQWKNWLRSQYQYNLPQISWARLVTQNWKNKINKDSLVLNPSLTKE 1260
Query: 3781 DSYEXXXXXXXXXXXXXEADSLLNPKHNVKKDSIYNLFCYKSIHSTEKNFDMSIGIALDN 3960
DSYE EADSLLNPKHNVKKDSIYNLFCYKSIHSTEKNFDMSIGIALDN
Sbjct: 1261 DSYEKKKFDNYKKQKFFEADSLLNPKHNVKKDSIYNLFCYKSIHSTEKNFDMSIGIALDN 1320
Query: 3961 CLVSSFLEKYNIRGMGEIRHRKYLDWRILNFWFTKKVTIEPWVDTKSKKKYINTKVQNYQ 4140
CLVSSFLEKYNIRGMGEIRHRKYLDWRILNFWFTKKVTIEPWVDTKSKKKYINTKVQNYQ
Sbjct: 1321 CLVSSFLEKYNIRGMGEIRHRKYLDWRILNFWFTKKVTIEPWVDTKSKKKYINTKVQNYQ 1380
Query: 4141 KIDKITQTDLANKKRNFFDWMGMNEEILNQRITNXXXXXXXXXXXXSSTYKMKPWVIPXX 4320
KIDKITQTDLANKKRNFFDWMGMNEEILNQRITN SSTYKMKPWVIP
Sbjct: 1381 KIDKITQTDLANKKRNFFDWMGMNEEILNQRITNFEFFFFPEFFLFSSTYKMKPWVIPIK 1440
Query: 4321 XXXXXXXXXXXXXXXXXXXXXGFIPSNEKESLRFYNLNKEEKESAGQVELESDKETKRNP 4500
GFIPSNEKESLRFYNLNKEEKESAGQVELESDKETKRNP
Sbjct: 1441 LLLLNFNENINVNKKIIRKKKGFIPSNEKESLRFYNLNKEEKESAGQVELESDKETKRNP 1500
Query: 4501 EAARLNQEKNIEENFAESTIXXXXXXXXXXSNTEAELDLFLTRYSRFQLRWNCFFNQKIL 4680
EAARLNQEKNIEENFAESTI SNTEAELDLFLTRYSRFQLRWNCFFNQKIL
Sbjct: 1501 EAARLNQEKNIEENFAESTIKKRKNKKQYKSNTEAELDLFLTRYSRFQLRWNCFFNQKIL 1560
Query: 4681 NNVKVYCLLVRLNNPNEIAVSSIERGEMSLDILMIEKNFTFAKLMKKGILIIEPVRLSVQ 4860
NNVKVYCLLVRLNNPNEIAVSSIERGEMSLDILMIEKNFTFAKLMKKGILIIEPVRLSVQ
Sbjct: 1561 NNVKVYCLLVRLNNPNEIAVSSIERGEMSLDILMIEKNFTFAKLMKKGILIIEPVRLSVQ 1620
Query: 4861 NDGQLIIYRTIGISLVXXXXXXXXXXXXXXXXXXXXFFEKSITKYQNKTVNKKKNNYDFF 5040
NDGQLIIYRTIGISLV FFEKSITKYQNKTVNKKKNNYDFF
Sbjct: 1621 NDGQLIIYRTIGISLVHKNKHKISKRYKKKSYINKKFFEKSITKYQNKTVNKKKNNYDFF 1680
Query: 5041 VPEKILSPKRRREFRILICFNLKKKNARDTNSRFDKNIQNLTTVLHXXXXXXXXXXXXXX 5220
VPEKILSPKRRREFRILICFNLKKKNARDTNSRFDKNIQNLTTVLH
Sbjct: 1681 VPEKILSPKRRREFRILICFNLKKKNARDTNSRFDKNIQNLTTVLHKKKDLDLDKDKNNL 1740
Query: 5221 XXXXSFLWPNFKLEDLACMNRYWFNTTNGNHFSMIRIRMYTRFPIP 5358
SFLWPNFKLEDLACMNRYWFNTTNGNHFSMIRIRMYTRFPIP
Sbjct: 1741 INLKSFLWPNFKLEDLACMNRYWFNTTNGNHFSMIRIRMYTRFPIP 1786
>sp|P12222|YCF1_TOBAC Hypothetical 226 kDa protein ycf1 (ORF 1901)
Length = 1901
Score = 1616 bits (4185), Expect = 0.0
Identities = 955/1929 (49%), Positives = 1173/1929 (60%), Gaps = 145/1929 (7%)
Frame = +1
Query: 4 MVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKK 183
M+FQSF+LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRA VM EEGTEKK
Sbjct: 1 MIFQSFLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRALVM---EEGTEKK 57
Query: 184 VSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLXXXXXXXXXXXXDYGSTT 363
VSATTGFI GQLMMFISIYYAPLHLALGRPHTITVLALPYLL DYGSTT
Sbjct: 58 VSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDYGSTT 117
Query: 364 RNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 543
RN MRNL IQCVFLNNLIFQLFNHFILPSSMLARLVNIY+FRCN+K+LFVTS FVGWLIG
Sbjct: 118 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYLFRCNSKILFVTSGFVGWLIG 177
Query: 544 HILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYLG 723
HILFMKW+GLVLVWI+QN+SIRSN IRSNKY LV ELRNSMARIFSILLFITCVYYLG
Sbjct: 178 HILFMKWLGLVLVWIRQNHSIRSNKYIRSNKY--LVLELRNSMARIFSILLFITCVYYLG 235
Query: 724 RIPSPIFTKKLKGTSETG--------------------GTKQDQEVSTEEAPFPS--LFS 837
RIPSPI TKKLK S+T GTKQ+QE STEE P+PS LFS
Sbjct: 236 RIPSPILTKKLKEASKTEERVESEEERDVEIETASEMKGTKQEQEGSTEEDPYPSPSLFS 295
Query: 838 EEGEDLDKIDEMEEIRVNGKDKINKDDEFHVRT----YYNYKTVSENLY-------GNKE 984
EE D DKIDE EEIRVNGKDKI D+FH Y N T + +Y N
Sbjct: 296 EERWDPDKIDETEEIRVNGKDKIK--DKFHSHLTETGYNNINTSNSPIYDYEDSYLNNNN 353
Query: 985 NSNLEFFKI----KKKEDHFL-WFEKPFVTLVFDYKRWNRPNRYIKNDKIENIVRNEMSQ 1149
N E FK+ KK E+ L WF++P V+L+FDY RWNRP RYIKN++ E +R EMSQ
Sbjct: 354 TGNTEIFKLQLLDKKNENKDLFWFQQPLVSLLFDYNRWNRPFRYIKNNRFEQAIRTEMSQ 413
Query: 1150 YFFYTCQSDGKERISFTYPPNLSTFFEMIQKRIPSFTKEKKTFDQVSTYWSLIHEEKREN 1329
YFF TC+SDGK+RISFTYPP+LSTF++MI++RIP + +K +++ W ++EK N
Sbjct: 414 YFFNTCKSDGKQRISFTYPPSLSTFWKMIKRRIPLLSLQKTLPNELDNQWISTNKEKSNN 473
Query: 1330 LKKEFLNRIEALDKEWSVENILEKTTRFCYNEAKKEYLPKIYDPFLHGISRGRIKKLPPF 1509
L KEFLNR+E LDKE +ILE TR C ++ KKEY+PK+YDP L+G RG IKK
Sbjct: 474 LNKEFLNRLEVLDKESFSLDILETRTRLCNDDTKKEYVPKMYDPLLNGPYRGTIKKKFSP 533
Query: 1510 QIITETYRKNNLGGSWINKIHGLLL-KINYKKFEQTIEKFNRKSLSIE------------ 1650
II T +N IN+IH + L +Y++ EQ ++ +K LS E
Sbjct: 534 SIINNTSLENLKERVRINRIHTIFLPNTDYQELEQKVDTVAKKPLSTEIDEFLTLINEFG 593
Query: 1651 ---------KKLSFFSEPQQEEKINSEEEIKTFKFLFDIVRTDSNDQTLIKNFMDFPEIN 1803
K LS FS+ Q++ ++NSE+ K KF+F+ + N T K + EI+
Sbjct: 594 NEPKSSLNLKDLSLFSD-QEQGRVNSEKRTKFVKFVFNAIAP--NGTTSEKKSIGIKEIS 650
Query: 1804 KKVPRWSYKLISXXXXXXXXXXXXXXXXXXIRSRKAKRVVVFTDKEPHGEIYTNLKDNQN 1983
KK+PRWS+KLI+ IRSRKAKRVV+FT + + T D +
Sbjct: 651 KKIPRWSHKLITELEQQSGDYQEGVPLDHQIRSRKAKRVVIFTANNQNNDPDTKDTDTAD 710
Query: 1984 SDQNDEMALIRYSQQSDFRREIIKGSMRSQRRKTVIWEFFQAKVHSPLFFDRIDKLFFFS 2163
DQ E+ALIRYSQQ DFRR IIKGSMR+QRRKTVIW+ FQA VHSPLF DRI F FS
Sbjct: 711 QDQTKEVALIRYSQQPDFRRGIIKGSMRAQRRKTVIWKLFQANVHSPLFLDRITPPFLFS 770
Query: 2164 FDIWGLXXXXX---XXXXXXXXXXXXEEEQSKXXXX--------------XXXXXXXXWD 2292
FDI GL EEQ+K WD
Sbjct: 771 FDISGLIKPIFRNWSGKEGEFKILESREEQTKREEKKEKDKKGENKRKEKARIEIAEAWD 830
Query: 2293 SFLFAQIIRGSLLVTQSXXXXXXXXXXXXXXKNSVRMLLFQFPEWSQDLKDWKREMHVKC 2472
+ FAQIIRG +L+TQS KN RML+ Q PEWS+DL++W REMH+KC
Sbjct: 831 TIPFAQIIRGYMLITQSILRKYIVLPSLIIAKNLGRMLVLQLPEWSEDLQEWNREMHIKC 890
Query: 2473 TYNGVQLSETEFPRNWLTDGIQIKILFPFYLKPWHKSKFQASQKARLKKTKDKGEKNDFC 2652
TYNGVQLSETEFP+NWL DGIQIKILFPF LKPWH SK +S+ +KK K +K+DFC
Sbjct: 891 TYNGVQLSETEFPKNWLKDGIQIKILFPFCLKPWHISKLYSSRGELMKKKK---QKDDFC 947
Query: 2653 FLTVWGMETELPFGSAQRKPSFFEPXXXXXXXXXXXXXXXXXXXXXXXXERAPIFLKVAK 2832
FLTVWGME ELPFGS +++PSFFEP + +F +++K
Sbjct: 948 FLTVWGMEAELPFGSPRKRPSFFEPIFKELEKKIGKFKKKYFITLKVFKGKIKLFRRISK 1007
Query: 2833 ETKNWILKNFIFIKG----ISKRNLIPLFGPREIYELNEPKK--DSIISNQMIHELSVQN 2994
ETK W++K+ +FIK +SK N I LF +EI E NE KK DS++SNQ+I+E Q
Sbjct: 1008 ETKKWLIKSSLFIKKMKKELSKVNPIVLFRLKEIDESNETKKEKDSLMSNQIINESFSQI 1067
Query: 2995 KSLEWTNSSLSEKKIKNLIDRKKTIRNQIEEISKEKQNLT---NSCTKLRYDSKIIESSK 3165
+S W NSSL E K+K+L DR TI+NQIE I+KEK+ +T + + K ES K
Sbjct: 1068 ESGNWPNSSLIESKMKDLTDRTSTIKNQIERITKEKKKVTPEIDISPNKTNNIKKFESPK 1127
Query: 3166 KIWQTFKRKNTRLIRKSIFFFKFCIEQMSIAIFLGIINIPRITTQLFFESTKKILDKYIY 3345
KI+Q KR+NTRLI K +F K I+++ I +FL IINIPRI TQLF EST K++DKYI
Sbjct: 1128 KIFQILKRRNTRLIWKFHYFLKLFIQRLYIDLFLSIINIPRINTQLFLESTNKLIDKYIS 1187
Query: 3346 XXXXXXXXXXXT--LYFISTIKNLISNKKKMS----YDLCSLSQAYVFYKLSQIKVSNFC 3507
++FISTIK + N K + +DL LSQAYVFYKLSQ +V N
Sbjct: 1188 NNEINQEKINNQKKIHFISTIKKSLYNISKKNSHIFFDLSYLSQAYVFYKLSQPQVINLS 1247
Query: 3508 KLKAVLEYNICITSFFVKNKIKVFFQEHGIFHYELKNKTFLNSEVNQWKNWLRSQYQYNL 3687
KL++VL+YN TSFF+K KIK +F+ GIFH ELK+K + +NQWKNWLR YQY+L
Sbjct: 1248 KLRSVLQYNR--TSFFLKTKIKDYFRTLGIFHSELKHKKLQSYRINQWKNWLRRHYQYDL 1305
Query: 3688 PQISWARLVTQNWKNKINKDSLVLNPSLTKEDSYEXXXXXXXXXXXXXEADSLLNPKHNV 3867
QI W+RL+ Q W+N++N+ + N +L K +SYE E SL N K N
Sbjct: 1306 SQIRWSRLMPQKWRNRVNQGCMAQNRNLNKWNSYEKDQLIHYKKENDSELYSLANQKDNF 1365
Query: 3868 KKDSIYNLFCYKSIHSTEKN----------------------------FDMSIGIALDNC 3963
+K Y+L YKSI+ +KN FDM L N
Sbjct: 1366 QKCYRYDLLAYKSINYEKKNDSFISRLPFQVNKNLEISSNSNTSKHNLFDM-----LGNL 1420
Query: 3964 LVSSFLEKYNIRGMGEIRHRKYLDWRILNFWFTKKVTIEPWV--DTKSKKKYINTKV--Q 4131
++++L K NI + RKY DW+I++F +K IE WV DT S NTK+
Sbjct: 1421 HINNYLRKGNILYIERNLDRKYFDWKIIHFSLRQKEDIEAWVKIDTNSNP---NTKIGIN 1477
Query: 4132 NYQKIDKIT-------------QTDLANKKRNFFDWMGMNEEILNQRITNXXXXXXXXXX 4272
NYQ IDKI + + N K+ FFDWMGMNE+ILN+ I N
Sbjct: 1478 NYQIIDKIDKKGFFYLTIHQNPENNQKNSKKAFFDWMGMNEKILNRPILNLEFWFFPEFV 1537
Query: 4273 XXSSTYKMKPWVIPXXXXXXXXXXXXXXXXXXXXXXXG----FIPSNEKESLRFYNLNKE 4440
+ YK+KPW+IP F+ SN+K R +E
Sbjct: 1538 PLYNVYKIKPWIIPSKLLLLNLNTNENVSQNKNINKNQKQNFFLRSNKKIKNRI----QE 1593
Query: 4441 EKESAGQVELE--SDKETKRNPEAARLNQEKNIEENFAESTIXXXXXXXXXXSNTEAELD 4614
KE A Q E E SD E K N + +++++AES SNTEAELD
Sbjct: 1594 AKEPASQGEKERGSDIENKGNLGPVLSKHQNALKKDYAESDTKKGKKKKQYKSNTEAELD 1653
Query: 4615 LFLTRYSRFQLRWNCFFNQKILNNVKVYCLLVRLNNPNEIAVSSIERGEMSLDILMIEKN 4794
LFL RY FQLRWN NQ+++ N+KVYCLL+RL NP++IA+SSI+R EMSLDI++I+KN
Sbjct: 1654 LFLKRYLLFQLRWNDALNQRMIENIKVYCLLLRLINPSKIAISSIQRREMSLDIMLIQKN 1713
Query: 4795 FTFAKLMKKGILIIEPVRLSVQNDGQLIIYRTIGISLVXXXXXXXXXXXXXXXXXXXXFF 4974
T +LMKKGILIIEP+RLSV+N+GQ I+Y+TIGISLV F
Sbjct: 1714 LTLTELMKKGILIIEPIRLSVKNNGQFIMYQTIGISLVHKSKHQTNQRYPEQRYVDKKNF 1773
Query: 4975 EKSITKYQNKTVNKKKNNYDFFVPEKILSPKRRREFRILICFNLKKKNARDTNSRF--DK 5148
++ I + Q + +N KN++D VPE IL +RRRE RI FN N D NS F +
Sbjct: 1774 DEFILQPQTQRINTDKNHFDLLVPENILWSRRRRELRIRSLFNSLNWNGIDRNSVFCNEN 1833
Query: 5149 NIQNLTTVLHXXXXXXXXXXXXXXXXXXSFLWPNFKLEDLACMNRYWFNTTNGNHFSMIR 5328
N++N + L FLWPN++LEDLACMNRYWF+T NG+ FS++R
Sbjct: 1834 NVKNWSQFLDERKPLYKEKNELIKLKF--FLWPNYRLEDLACMNRYWFDTNNGSRFSILR 1891
Query: 5329 IRMYTRFPI 5355
I MY + I
Sbjct: 1892 IHMYPQLKI 1900
>ref|NP_783290.1| ycf1 protein [Atropa belladonna]|gi|20068391|emb|CAC88104.1| ycf1
protein [Atropa belladonna]
Length = 1880
Score = 1603 bits (4151), Expect = 0.0
Identities = 942/1912 (49%), Positives = 1165/1912 (60%), Gaps = 128/1912 (6%)
Frame = +1
Query: 4 MVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKK 183
M+FQSF+LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRA VM EEGTEKK
Sbjct: 1 MIFQSFLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRALVM---EEGTEKK 57
Query: 184 VSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLXXXXXXXXXXXXDYGSTT 363
VSAT GFI GQLMMFISIYYAPLHLALGRPHTITVLALPYLL DYGSTT
Sbjct: 58 VSATAGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDYGSTT 117
Query: 364 RNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 543
RN MRNL IQCVFLNNLIFQLFNHFILPSSMLARLVNIY+FRCNNK+LFVTS FVGWLIG
Sbjct: 118 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYLFRCNNKILFVTSGFVGWLIG 177
Query: 544 HILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYLG 723
HILFMKW+GLVLVWI+QN+SIR N IRSNKY LV ELRNSMARIFSILLFITCVYYLG
Sbjct: 178 HILFMKWLGLVLVWIRQNHSIRPNKYIRSNKY--LVLELRNSMARIFSILLFITCVYYLG 235
Query: 724 RIPSPIFTKKLKGTSETG--------------------GTKQDQEVSTEEAPFPS--LFS 837
RIPSPI TKKLK S+T GTKQ+QE STEE P+PS LFS
Sbjct: 236 RIPSPILTKKLKEASKTEERVESEEERDVEIETASEMKGTKQEQEGSTEEDPYPSPSLFS 295
Query: 838 EEGEDLDKIDEMEEIRVNGKDKINKDDEFHVRT----------------YYNYKTVSENL 969
EEG D DKI E EEIRVNGKDKI D+FH + YY ++ N
Sbjct: 296 EEGWDPDKIYETEEIRVNGKDKIK--DKFHSQLTETGYNNINTSNSPIYYYEDSYLNNNN 353
Query: 970 YGNKENSNLEFFKIKKKEDHFLWFEKPFVTLVFDYKRWNRPNRYIKNDKIENIVRNEMSQ 1149
GN EN L+ K + WF+KP V+L+F+Y RWNRP RYIKN++ E VR EMSQ
Sbjct: 354 TGNPENFKLQLLDKKNENKDLFWFQKPLVSLLFNYNRWNRPFRYIKNNRFEQAVRTEMSQ 413
Query: 1150 YFFYTCQSDGKERISFTYPPNLSTFFEMIQKRIPSFTKEKKTFDQVSTYWSLIHEEKREN 1329
YFF TC+SDGK+RISFTYPP+LSTF++MI+ R+P + +K +++ W ++EK N
Sbjct: 414 YFFDTCKSDGKQRISFTYPPSLSTFWKMIKGRLPLLSLQKTLPNELDNQWVSTNKEKSNN 473
Query: 1330 LKKEFLNRIEALDKEWSVENILEKTTRFCYNEAKKEYLPKIYDPFLHGISRGRIKKLPPF 1509
L KEFLNR+E LDKE +ILE TR ++ KKEY+PK+YDP L+G RG IKK
Sbjct: 474 LNKEFLNRLEVLDKESLSLDILETRTRLSNDDTKKEYVPKMYDPLLNGPYRGTIKKGFSP 533
Query: 1510 QIITETYRKNNLGGSWINKIHGLLL-KINYKKFEQTIEKFNRKSLS--IEKKLS----FF 1668
II T +N +N+IH + L +Y++FEQ ++ ++K LS I++ L+ F
Sbjct: 534 SIINNTSIENLKERVILNRIHTIFLPNTDYQEFEQKVDTVDKKPLSTEIDEFLTLINEFG 593
Query: 1669 SEPQQEEKINSEEEIKTFKFLFDIVRTDSNDQTLIKNFMDFPEINKKVPRWSYKLISXXX 1848
+EP+ K+NSE++ K KFLF+ + D N +K + EI+KK+PRWS+KLI+
Sbjct: 594 NEPKSSLKVNSEKKTKFVKFLFNAI--DPNGTKSVKKSIGIKEISKKIPRWSHKLITELE 651
Query: 1849 XXXXXXXXXXXXXXXIRSRKAKRVVVFTDKEPHGEIYTNLKDNQNSDQNDEMALIRYSQQ 2028
IRSRKA+RVV+FT TN+ D+ + + +E+ALI YSQQ
Sbjct: 652 QQLGEFKEGVSLDHQIRSRKARRVVIFT---------TNM-DSDDPEVKEEVALISYSQQ 701
Query: 2029 SDFRREIIKGSMRSQRRKTVIWEFFQAKVHSPLFFDRIDKLFFFSFDI----------WG 2178
SDFRR IIKGSMR+QRRKTVIW+ FQA VHSP F DRI FSFDI W
Sbjct: 702 SDFRRGIIKGSMRAQRRKTVIWKLFQANVHSPFFLDRITPPRLFSFDISELIKPIFRNWA 761
Query: 2179 LXXXXXXXXXXXXXXXXXEE--------EQSKXXXXXXXXXXXXWDSFLFAQIIRGSLLV 2334
EE E WDS LFAQIIRGS+L+
Sbjct: 762 GKEGEFEIIEFREEQPKREEKKETDKKGETKSKKEKARIAIAEAWDSILFAQIIRGSMLI 821
Query: 2335 TQSXXXXXXXXXXXXXXKNSVRMLLFQFPEWSQDLKDWKREMHVKCTYNGVQLSETEFPR 2514
TQS KN RML Q PEWS+DL++W REMH+KCTYNGVQLSETEFP+
Sbjct: 822 TQSILRKYILLPSLIIAKNLGRMLFLQLPEWSEDLEEWNREMHIKCTYNGVQLSETEFPK 881
Query: 2515 NWLTDGIQIKILFPFYLKPWHKSKFQASQKARLKKTKDKGEKNDFCFLTVWGMETELPFG 2694
NWL DGIQIKILFPF LKPWH SK S + +KK K +K+DFCFLTVWGME ELPFG
Sbjct: 882 NWLRDGIQIKILFPFCLKPWHISKLYPSHEELMKKKK---QKDDFCFLTVWGMEAELPFG 938
Query: 2695 SAQRKPSFFEPXXXXXXXXXXXXXXXXXXXXXXXXERAPIFLKVAKETKNWILKNFIFIK 2874
S + +PSFFEP + +F +++KETK W++K+ +F+K
Sbjct: 939 SPRSRPSFFEPIFKELEKKNGKLKKKYFITLKVLKGKTKLFRRISKETKKWLIKSILFLK 998
Query: 2875 GI----SKRNLIPLFGPREIYELNEPKK--DSIISNQMIHELSVQNKSLEWTNSSLSEKK 3036
I SK LI LF +EI E NE KK DS+ISNQ+I+E Q +S+ W NSSL E K
Sbjct: 999 KIRKELSKIKLIVLFRFKEISESNETKKEKDSLISNQIINESFSQIESVNWPNSSLIETK 1058
Query: 3037 IKNLIDRKKTIRNQIEEISKEKQNLTNSCTKLRYDS---KIIESSKKIWQTFKRKNTRLI 3207
+K+L DR TI+NQIE I+KEK+ +T R + K ES+K I+Q +R+NTRLI
Sbjct: 1059 MKDLTDRTSTIKNQIERITKEKKKVTPEIDISRNKTNNIKKFESTKNIFQILQRRNTRLI 1118
Query: 3208 RKSIFFFKFCIEQMSIAIFLGIINIPRITTQLFFESTKKILDKYIYXXXXXXXXXXXT-- 3381
K +F K I+++ I +FL IINIPRI TQLF EST K++DKYI
Sbjct: 1119 WKFHYFIKLFIQRLYINLFLSIINIPRINTQLFLESTNKLIDKYISNNEINQEKINNKKK 1178
Query: 3382 LYFISTIKNL---ISNKKK-MSYDLCSLSQAYVFYKLSQIKVSNFCKLKAVLEYNICITS 3549
++FIST+K ISNK + +DL LSQAYVFYKLSQ +V N K ++VL+YN TS
Sbjct: 1179 IHFISTLKKSLYNISNKNSHIFFDLSYLSQAYVFYKLSQTQVINLSKFRSVLQYNR--TS 1236
Query: 3550 FFVKNKIKVFFQEHGIFHYELKNKTFLNSEVNQWKNWLRSQYQYNLPQISWARLVTQNWK 3729
FF+K KIK +F+ GIFH ELK+K + +NQWKNWLR YQY+L QI W+RL+ Q W+
Sbjct: 1237 FFLKTKIKDYFRTLGIFHSELKHKKLQSYRINQWKNWLRRHYQYDLSQIRWSRLMPQKWR 1296
Query: 3730 NKINKDSLVLNPS--LTKEDSYEXXXXXXXXXXXXXEADSLLNPKHNVKKDSIYNLFCYK 3903
N++N+ + N + L K +SYE E SL N + N +K Y+L YK
Sbjct: 1297 NRVNQSCMAQNKNINLNKWNSYENDQLIHYKKENDSELYSLSNQEDNFQKCYRYDLLSYK 1356
Query: 3904 SIH--------------STEKNFDMSIGIALD---------NCLVSSFLEKYNIRGMGEI 4014
SI+ KN ++S N ++++L K NI +
Sbjct: 1357 SINYKNKSDSFISRLPFQVNKNLEISYNSNTSKHNFFDMPGNLYINNYLRKGNILYIERN 1416
Query: 4015 RHRKYLDWRILNFWFTKKVTIEPWV--DTKSKKKYINTK--VQNYQKIDKITQTDL---- 4170
RKY DW+I++F +K IE WV DT S NTK + NYQ I+KI + L
Sbjct: 1417 LDRKYFDWKIIHFSLRQKGDIEAWVKIDTNSNP---NTKFGINNYQIIEKIDKKGLFYLT 1473
Query: 4171 ---------ANKKRNFFDWMGMNEEILNQRITNXXXXXXXXXXXXSSTYKMKPWVIPXXX 4323
N K+ FFDWMGMNE+I N+ I N + YK+KPW+IP
Sbjct: 1474 IHQNPENTQKNSKKVFFDWMGMNEKIFNRPIFNLEFWFFPEFVLLYNVYKIKPWIIPSKL 1533
Query: 4324 XXXXXXXXXXXXXXXXXXXXG----FIPSNEKESLRFYNLNKEEKESAGQVELE--SDKE 4485
F+PSN+K R +E KE A Q E E SD E
Sbjct: 1534 LLLNLNTNENVSQNKNINKNQKQNFFLPSNKKIKNRI----QEAKEPANQGERERGSDIE 1589
Query: 4486 TKRNPEAARLNQEKNIEENFAESTIXXXXXXXXXXSNTEAELDLFLTRYSRFQLRWNCFF 4665
K NP + ++E+++AES SNTEAELDLFL RY FQL+WN
Sbjct: 1590 NKVNPGPVLSKHQNDLEKDYAESDTKKSKKKKQYKSNTEAELDLFLKRYLLFQLKWNDDL 1649
Query: 4666 NQKILNNVKVYCLLVRLNNPNEIAVSSIERGEMSLDILMIEKNFTFAKLMKKGILIIEPV 4845
NQ+++ N+KVYCLL+RL NP +I++SS++RGEMSLDI++I+ N T +LMKKGILIIEP+
Sbjct: 1650 NQRMIENIKVYCLLLRLINPTKISISSVQRGEMSLDIMLIQGNLTLTELMKKGILIIEPI 1709
Query: 4846 RLSVQNDGQLIIYRTIGISLVXXXXXXXXXXXXXXXXXXXXFFEKSITKYQNKTVNKKKN 5025
RLSV+N+GQ I+Y+TIGISLV F++SI + Q + +N KN
Sbjct: 1710 RLSVKNNGQFIMYQTIGISLVHKSKHQTNQRYRDQRYVDKKNFDESILQPQTQRINTDKN 1769
Query: 5026 NYDFFVPEKILSPKRRREFRILICFNLKKKNARDTNSRF--DKNIQNLTTVLHXXXXXXX 5199
++D VPE IL +RRRE RI FN N D NS F + N++N + L
Sbjct: 1770 HFDLLVPENILWSRRRRELRIRSFFNSLNWNGVDRNSVFCNETNVKNWSQFLDERKPLYK 1829
Query: 5200 XXXXXXXXXXXSFLWPNFKLEDLACMNRYWFNTTNGNHFSMIRIRMYTRFPI 5355
FLWPN++LEDLACMNRYWF+ NG+ FS++RI MY R I
Sbjct: 1830 EKNELIKLKF--FLWPNYRLEDLACMNRYWFDNNNGSRFSILRIHMYPRLKI 1879
>emb|CAB88792.1| ycf1 protein [Spinacia oleracea]|gi|11497589|ref|NP_054996.1| ycf1
protein [Spinacia oleracea]
Length = 1833
Score = 1486 bits (3848), Expect = 0.0
Identities = 892/1909 (46%), Positives = 1120/1909 (57%), Gaps = 127/1909 (6%)
Frame = +1
Query: 4 MVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKK 183
M+FQSF+LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRA+VM+EGEEGTEKK
Sbjct: 1 MIFQSFLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRAQVMEEGEEGTEKK 60
Query: 184 VSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLXXXXXXXXXXXXDYGSTT 363
VS TTGFI GQLMMFISIYY PLHLALGRPHTITVLALPYLL DYGST+
Sbjct: 61 VSGTTGFIMGQLMMFISIYYTPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDYGSTS 120
Query: 364 RNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 543
RN MRNL IQCVFLNNLIFQLFN+FILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG
Sbjct: 121 RNSMRNLSIQCVFLNNLIFQLFNYFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 180
Query: 544 HILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYLG 723
HILFMKWVGLVLVWIQQNNSIRSN K+LVSELRNSMARIFSIL FITCVYYLG
Sbjct: 181 HILFMKWVGLVLVWIQQNNSIRSN--------KYLVSELRNSMARIFSILFFITCVYYLG 232
Query: 724 RIPSPIFTKKLKG-----------------TSETGGTKQDQEVSTEEAPFPSLFSEEGED 852
R+PSPIFT KLK TSET TKQ++E TEE P PSLFSEE ED
Sbjct: 233 RMPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSEEKED 292
Query: 853 LDKIDEMEEIRVNGKDKINKDDEFHVRTYYNYKTVSENLYGNKENSNLEFFKIKKKEDHF 1032
DKIDE E+IRVNGKDK DEFH++ YK + GN++ S LE K +KK
Sbjct: 293 PDKIDETEKIRVNGKDKTK--DEFHLKEAC-YKNSPTSYSGNQDISKLEILKKEKKI--L 347
Query: 1033 LWFEKPFVTLVFDYKRWNRPNRYIKNDKIENIVRNEMSQYFFYTCQSDGKERISFTYPPN 1212
WF+KP + L+FDYKRWNRP RYIKN++ EN VRNEMSQYFFYTCQ+DGK+RISFTYPP+
Sbjct: 348 FWFQKPLIFLLFDYKRWNRPMRYIKNNRFENAVRNEMSQYFFYTCQNDGKQRISFTYPPS 407
Query: 1213 LSTFFEMIQKRIPSFTKEKKTFD-QVSTYWSLIHEEKRENLKKEFLNRIEALDKEWSVEN 1389
LS F+EMIQ++I T EK +D ++ YW +E+K+ +L EF NRI LDK +
Sbjct: 408 LSIFWEMIQRKISLATTEKFLYDDELYNYWIYTNEQKKNSLSNEFANRITVLDKGLFYID 467
Query: 1390 ILEKTTRFCYNEAKKEYLPKIYDPFLHGISRGRIKK-LPPFQIITETYRKNNLGGSWINK 1566
+L+K TR C ++K EYL K +DP L+G RG IKK L PF ET K + +INK
Sbjct: 468 VLDKKTRLC--KSKNEYLQKDHDPLLNGSYRGIIKKTLLPFINNDETTVKKLIDEIFINK 525
Query: 1567 IHGLLLKIN-YKKFEQTIEKFNRKSLSI-------------------EKKLSFFSEPQQE 1686
IH +L N Y++FE + F + +S +K +S SE +Q
Sbjct: 526 IHSVLGNCNNYQEFEYKKDPFKKNPISSKIRHFVTLMSQFDGESTFNQKGISLLSEHKQ- 584
Query: 1687 EKINSEEEIKTFKFLFDIVRTDSNDQTLIKNFMDFPEINKKVPRWSYKLISXXXXXXXXX 1866
I SE+ FKFL D + DS QT+ K + EI+KKVP WSY+LI
Sbjct: 585 --ICSEDPEIFFKFLVDTIIADSFTQTIPKESIGIKEISKKVPHWSYQLIDESEQEEMEN 642
Query: 1867 XXXXXXXXXIRSRKAKRVVVFTDKEPHGEIYT-NLKDNQNSDQNDEMALIRYSQQSDFRR 2043
IRSR K VV FTDK+ + + T N D S+Q DE+ L RY Q+SDFRR
Sbjct: 643 EKQVSWPHQIRSRSGKEVVFFTDKQENTDNPTPNTADI--SEQADEVVLTRYPQESDFRR 700
Query: 2044 EIIKGSMRSQRRKTVIWEFFQAKVHSPLFFDRIDKLFFFSFDIWGL-------------- 2181
+IIKGSMRSQRRK VIWE FQA +HSPLF DR +K FFS L
Sbjct: 701 DIIKGSMRSQRRKIVIWELFQANIHSPLFLDRTNKSSFFSITFSRLIKRIFKNYMGKNPE 760
Query: 2182 ---XXXXXXXXXXXXXXXXXEEEQSKXXXXXXXXXXXXWDSFLFAQIIRGSLLVTQSXXX 2352
++++ K WD+ AQIIR +L+TQS
Sbjct: 761 LDISNYKEEELKKKEKAKEHKKDKEKKQEQIRLDIAETWDTIPGAQIIRSLILLTQSILR 820
Query: 2353 XXXXXXXXXXXKNSVRMLLFQFPEWSQDLKDWKREMHVKCTYNGVQLSETEFPRNWLTDG 2532
KN R+LLFQ PEWS D K+W EMH+KCTYNGVQLSE EFP+NWLTDG
Sbjct: 821 KYILLPLLITGKNIGRILLFQLPEWSDDFKEWTSEMHIKCTYNGVQLSEKEFPKNWLTDG 880
Query: 2533 IQIKILFPFYLKPWHKSKFQASQKARLKKTKDKGEKNDFCFLTVWGMETELPFGSAQRKP 2712
+QIKIL PF LKPWHKS + + KK K++ + + FCFLTV G+ET++PFG +++P
Sbjct: 881 MQIKILSPFCLKPWHKSMIRPYHQD--KKKKEQNQIDAFCFLTVVGLETDIPFGPPRKRP 938
Query: 2713 SFFEPXXXXXXXXXXXXXXXXXXXXXXXXERAPIFLKVAKETKNWILKNFIFIKGISKR- 2889
SFF+P E+ FLK+ ET NWI++ F F K I ++
Sbjct: 939 SFFQPIFKQLDKKIEKLIKGNFQVRKRLKEKILFFLKLQNETNNWIIEIFPFFKKIIRKM 998
Query: 2890 ---NLIPLFGPREIYELNEPKKDSIISNQMIHELSVQNKSLEWTNSSLSEKKIKNLIDRK 3060
N I +FG +E + +KDS I N MIHE SVQ + L TNSS++EKK+K+L +R
Sbjct: 999 STVNTIGVFGLKEASSEIKSEKDSRIKNHMIHESSVQIRFLNQTNSSVTEKKMKDLANRT 1058
Query: 3061 KTIRNQIEEISKEKQNLTNSCTKLRYDSKIIESSKKIWQTFKRKNTRLIRKSIFFFKFCI 3240
+ I+N+IE+IS +K L S K RY +K + Q KR+N RLIR S + KF
Sbjct: 1059 RIIKNKIEKISNDK--LKMSPKKTRY------GTKNLGQILKRRNARLIRNSNYILKFFR 1110
Query: 3241 EQMSIAIFLGIINIPRITTQLFFESTKKILDKYIYXXXXXXXXXXXTLYFISTIK----- 3405
E++ IFL IINIP+I TQLF ESTK +DK IY + FISTI
Sbjct: 1111 ERIYGDIFLYIINIPKINTQLFLESTKNGIDKSIYNNESITKTNKNRIQFISTINKKFLP 1170
Query: 3406 --NLISNKKKMSYDLCSLSQAYVFYKLSQIKVSNFCKLKAVLEYNICITSFFVKNKIKVF 3579
+ N K+ D LSQAYVFYKLSQ K+ N KL+ VL+Y S F+KN+IK F
Sbjct: 1171 FLSTSKNNSKIISDFSFLSQAYVFYKLSQAKILNLYKLRLVLQYR--GISLFLKNEIKDF 1228
Query: 3580 FQEHGIFHYELKNKTFLNSEVNQWKNW--LRSQYQYNLPQISWARLVTQNWKNKINKDSL 3753
F GI + ELK K NS +NQWKNW L++ YQYNL Q+ W+RLV Q W+N++ +
Sbjct: 1229 FGTQGITNSELKTKKLPNSGMNQWKNWLKLKNNYQYNLSQLKWSRLVPQKWRNRVTEHCE 1288
Query: 3754 VLNPSLTKEDSYEXXXXXXXXXXXXXEADSLLNP--KHNVKKDSIYNLFCYKSIHSTEKN 3927
V N +L + + + LL P K+N +K+ Y++ YK + KN
Sbjct: 1289 VENTNLYQNEE-----------LINSKKHLLLLPDQKYNFQKNYRYDVLSYKFFNYKNKN 1337
Query: 3928 --------------------------------FDMSIGIALDNCLVSSFLEKYNIRGMGE 4011
DM I + N S+LEK I + +
Sbjct: 1338 DSYRYSYGLPFQVNKNQEFSYTYNYNINNNKFIDMWWNIPISN---FSYLEKTKIMDIDK 1394
Query: 4012 IRHRKYLDWRILNFWFTKKVTIEPWVD-TKSKKKYINTKVQNYQKIDKITQTDL------ 4170
RKYLD++IL+F K+ IE W+D + S + T+ +NYQ ++KI + L
Sbjct: 1395 NIDRKYLDFKILDFSLRNKIDIEDWIDISTSINENTKTEPRNYQIVEKINKKSLVYSTIY 1454
Query: 4171 -----ANKKRNFFDWMGMNEEILNQRITNXXXXXXXXXXXXSSTYKMKPWVIP----XXX 4323
+++K FDWMGMNE+IL++ I+N + YKMKPWVIP
Sbjct: 1455 QEIKQSDQKNKLFDWMGMNEKILSRPISNLEFWFFSEFFSFYNAYKMKPWVIPINLLFSN 1514
Query: 4324 XXXXXXXXXXXXXXXXXXXXGFIPSNEKESLRFYNLNKEEKESAGQVELESDKETKRNPE 4503
FIPSNEK+S N N++EKE + +L S
Sbjct: 1515 SNVSEKFSKNKSINRKKKTNPFIPSNEKKSFELENRNQDEKELVSKEDLGS--------- 1565
Query: 4504 AARLNQEKNIEENFAE-STIXXXXXXXXXXSNTEAELDLFLTRYSRFQLRWNCFFNQKIL 4680
+ N EK+IEE++ I S EAE DLFL RY FQL+W N+K++
Sbjct: 1566 YVQENYEKDIEEDYISFIDIKKPIKQKQPKSVIEAEFDLFLKRYLLFQLKWADSLNEKLM 1625
Query: 4681 NNVKVYCLLVRLNNPNEIAVSSIERGEMSLDILMIEKNFTFAKLMKKGILIIEPVRLSVQ 4860
+N++VYCL++RL NP EI +SSIER E+S+DI++ K+F +K +LIIEP+RLS++
Sbjct: 1626 DNIQVYCLVLRLINPIEILISSIERKELSMDIMLDRKDFNCPNWKQKRVLIIEPIRLSIR 1685
Query: 4861 NDGQLIIYRTIGISLVXXXXXXXXXXXXXXXXXXXXFFEKSITKYQNKTVNKK------K 5022
DGQ ++Y+TIGISLV ++ K ++ V+KK K
Sbjct: 1686 GDGQFLLYQTIGISLVHKSK------------------HQNNQKRYSENVDKKFLGERNK 1727
Query: 5023 NNYDFFVPEKILSPKRRREFRILICFNLKKKNARDTNSRFDKNIQNLTTVLHXXXXXXXX 5202
NN+D PE +LSP+RRRE RIL+C N + N +TN + ++N
Sbjct: 1728 NNFDLLAPENLLSPRRRRELRILLCLNSRNNNGVNTNP-MENRVKNCNQFFDEKKDLDRD 1786
Query: 5203 XXXXXXXXXXSFLWPNFKLEDLACMNRYWFNTTNGNHFSMIRIRMYTRF 5349
FLWPN++LEDLACMNR+WF+T NG+ FS++RI MY +F
Sbjct: 1787 KNTLRNLKF--FLWPNYRLEDLACMNRFWFDTNNGSRFSILRIHMYPQF 1833
>sp|Q9BBN6|YCF1_LOTJA Hypothetical 214.8 kDa protein ycf1|gi|13518495|ref|NP_084853.1|
hypothetical protein [Lotus
japonicus]|gi|13359036|dbj|BAB33253.1| hypothetical
protein [Lotus japonicus]
Length = 1793
Score = 1230 bits (3183), Expect = 0.0
Identities = 788/1900 (41%), Positives = 1056/1900 (55%), Gaps = 119/1900 (6%)
Frame = +1
Query: 4 MVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKK 183
M+FQSFIL NLVSLC+KIINSV+VVGLYYGF+TTFS GPSYLFLLRA VM EEGTEKK
Sbjct: 1 MIFQSFILDNLVSLCLKIINSVIVVGLYYGFMTTFSTGPSYLFLLRAHVM---EEGTEKK 57
Query: 184 VSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLXXXXXXXXXXXXDYGSTT 363
+SATTGFI GQL+MFISIYYAPLH+AL RPHTITV+ LPYLL +Y
Sbjct: 58 ISATTGFITGQLVMFISIYYAPLHIALDRPHTITVITLPYLLLYFLGNNQKNFLNYVYKN 117
Query: 364 RNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 543
+N +R+ IQ +F NL FQL N F LPSS+L RL NIY+F+ NNK+LF+TSSFVGWLIG
Sbjct: 118 QNSIRHFSIQRIFFQNLFFQLLNPFFLPSSILMRLANIYIFQSNNKVLFLTSSFVGWLIG 177
Query: 544 HILFMKWVGLVLVWIQQ-NNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYL 720
H+ FMKW+GL+LVWIQ+ NNSI+S V IRSNK ++++ R SM +IF I FITC+YYL
Sbjct: 178 HVFFMKWIGLMLVWIQEKNNSIKSTVAIRSNKG--VLAKFRKSMFQIFLIFFFITCLYYL 235
Query: 721 GRIPSPI--FTKKLKGTSETG------------------GTKQDQEVSTEEAPFPSLFSE 840
GRIP PI FT K+ E G G+KQ+Q+++ EE P LFS
Sbjct: 236 GRIP-PIYFFTPKMSEIKERGEIEKREGEIDIEINSQRAGSKQEQKITAEEKLSPYLFS- 293
Query: 841 EGEDLDKIDEMEEIRVNGKDKINKDDEFHVRTYYNYKTVSENLYGNKENSNLEFFKIKKK 1020
K+N+NL+ KIK++
Sbjct: 294 ----------------------------------------------KKNNNLD--KIKEE 305
Query: 1021 EDHFLWFEKPFVTLVFDYKRWNRPNRYIKNDKIENIVRNEMSQYFFYTCQSDGKERISFT 1200
D F F+KP VT++FDY RWNRP RYIKND+ EN+VRNE+SQ+FF+TCQSDGKERISFT
Sbjct: 306 NDIF-GFQKPLVTILFDYNRWNRPLRYIKNDRFENVVRNEISQFFFFTCQSDGKERISFT 364
Query: 1201 YPPNLSTFFEMIQKRIPSFTKEKKTFDQVSTYWSLIHEEKRENLKKEFLNRIEALDKEWS 1380
YPPNLSTF +M++ +I FT++ +++++S W +EEK++ L EFLNR+E LDKE
Sbjct: 365 YPPNLSTFQKMMEMKISLFTRDIISYEELSNSWRSTNEEKKKKLTNEFLNRVEVLDKESL 424
Query: 1381 VENILEKTTRFCYNEAKKEYLPKIYDPFLHGISRGRIKKL--PPFQIITETYRKNNLGGS 1554
+I E R C +E K++YL K YDPFL+G RG+I+K PP Q ETY+KN+L
Sbjct: 425 PVDIFENRIRLCNDEKKQKYLTKEYDPFLNGPCRGQIQKWFSPPIQ--KETYKKNSL--- 479
Query: 1555 WINKIHGLLLKI--NYKKFEQT-------------------IEKFNRKSLSIEKKLSFFS 1671
+INKIHG+L NY KFEQ I KF+RKS+S +
Sbjct: 480 FINKIHGILFSNTNNYPKFEQKKNIFDRKSLLTDINFFFNLITKFSRKSVSSLNFEGLYL 539
Query: 1672 EPQQEE-KINSEEEIKTFKFLFDIVRTDSNDQTLI--KNFMDFPEINKKVPRWSYKLISX 1842
P+ + K++S+++ KFLFD +R D ND ++ + + EI KK+PRWSY LI
Sbjct: 540 FPKDNKGKMSSKKK----KFLFDTIRPDLNDNKIVNLQKCIGINEIVKKLPRWSYNLIDE 595
Query: 1843 XXXXXXXXXXXXXXXXXIRSRKAKRVVVFTDKEPHGEIYTNLKDNQNSDQNDEMALIRYS 2022
IRSRKAKRVV+ T + + Y D N+++ E+ALIRYS
Sbjct: 596 LEQLEGKKKVEYHQ---IRSRKAKRVVLLTKNSQNDDNYDETTDTDNTEKKKELALIRYS 652
Query: 2023 QQSDFRREIIKGSMRSQRRKTVIWEFFQAKVHSPLFFDRIDKLFFFSFDI---------- 2172
QQ DFRR+IIKGS+R+QRRKTV + FQ V SPLF ++++K FF FDI
Sbjct: 653 QQPDFRRDIIKGSIRAQRRKTVTCKLFQRSVDSPLFLEKMEKTSFFCFDILDSSKIFFMF 712
Query: 2173 --W-----GLXXXXXXXXXXXXXXXXXEEE--QSKXXXXXXXXXXXXWDSFLFAQIIRGS 2325
W L EE+ +++ WDS +FAQ+IRG
Sbjct: 713 KNWIRKKKELKNSDYTDEKAKESQKKEEEKIKKNEKEEKRRIEIGEAWDSIIFAQVIRGC 772
Query: 2326 LLVTQSXXXXXXXXXXXXXXKNSVRMLLFQFPEWSQDLKDWKREMHVKCTYNGVQLSETE 2505
LL+TQS KN VR+LLFQFPEWS+D +DW+REM++KCTYNGVQLSETE
Sbjct: 773 LLITQSILRKYILLPSLIITKNIVRILLFQFPEWSEDFRDWQREMYIKCTYNGVQLSETE 832
Query: 2506 FPRNWLTDGIQIKILFPFYLKPWHKSKFQASQKARLKKTKDKGEKNDFCFLTVWGMETEL 2685
FP+ WLTDGIQIKILFPF LKPWH+SK + ++K + K +K +FCFLT++GME EL
Sbjct: 833 FPKKWLTDGIQIKILFPFRLKPWHRSKLRFTEKKKDPLKNKKVKKKNFCFLTIFGMEVEL 892
Query: 2686 PF-GSAQRKPSFFEPXXXXXXXXXXXXXXXXXXXXXXXXERAPIFLKVAKETKNWI---- 2850
PF G + + SFF+P ER F+ KET I
Sbjct: 893 PFSGYPRNRFSFFDPILKELKKKMKKLKNNFFLILKIVNERTKNFITTLKETSKRIIQSI 952
Query: 2851 LKNFIFIKGISKR--NLIPLFGPREIYELNEPKKDSIIS--NQMIHELSVQNKSLEWTNS 3018
LK +F+ K+ N + LF ++I ELN+ KK+ I+ N +I+E ++ +++ TN
Sbjct: 953 LKKVLFLNKKIKKLYNYLFLFRFKKIDELNQNKKNFPITKNNPIIYESTILIQAINKTNC 1012
Query: 3019 SLSEKKIKNLIDRKKTIRNQIEEISKEKQN------LTNSCTKLRYDSKIIESSKKIWQT 3180
SL+EKKIK + + K I +IE ++KE + + ++ K ++K +E KKI Q
Sbjct: 1013 SLTEKKIKAINAKTKKIIKKIERMTKENKGGFLISEINSNSKKTSSNTKGLELEKKILQI 1072
Query: 3181 FKRKNTRLIRKSIFFFKFCIEQMSIA---IFLGIINIPRITTQLFFESTKKILDKYIYXX 3351
+R+N +L K FFKF + M IFL I+++PRI Q F ESTKKI+++ IY
Sbjct: 1073 LQRRNVQLTHKLYSFFKFLLNFMKKVYTDIFLCIVSVPRINVQFFLESTKKIINQSIYNK 1132
Query: 3352 XXXXXXXXXT----LYFISTIKNLISNKKKM-----SYDLCSLSQAYVFYKLSQIKVSNF 3504
T ++FIS I N SN K SY++ +LSQAYVF+K+SQI+V N
Sbjct: 1133 KTNEEIIDKTNQSIIHFISII-NKSSNTKNTNSAANSYEVSALSQAYVFFKISQIQVLNV 1191
Query: 3505 CKLKAVLEYNICITSFFVKNKIK-VFFQEHGIFHYELKNKTFLNSEVNQWKNWLRSQYQY 3681
K K ++ SFF+K++IK FF GI H +L++K S NQW NWL+ YQY
Sbjct: 1192 YKYKFKYVFDYDGRSFFIKDEIKDYFFGIQGIIHSKLRHKNSPVSLKNQWTNWLKVHYQY 1251
Query: 3682 NLPQISWARLVTQNWKNKINKDSLVLNPSLTKEDSYEXXXXXXXXXXXXXEADSLLNP-- 3855
+L Q W+RLV +N KN+INK L N LTK DSY+ + D L+N
Sbjct: 1252 DLSQNRWSRLVQKNLKNRINKHRLDQNKDLTKCDSYKKTQLIVSKNKKQ-QVDFLVNLLI 1310
Query: 3856 KHNVKKDSIYNLFCYKSIHSTEKNFDMSIGIALDNCLVSSFLEKYNIRGMGEIRHRKYLD 4035
+ +KK S Y+L YK I+ EK ++SI Y R + ++ +
Sbjct: 1311 QKKIKKQSRYDLLLYKFINYAEKK-ELSI---------------YGYRSPFQANKKRAIS 1354
Query: 4036 WRILNFWFTKKVTIEPWVDTKSKKKYINTKVQNYQKIDKITQTDLANKKRNFFDWMGMNE 4215
+ + T+K +D S K YI Y + N+ R +FDW+ M+
Sbjct: 1355 YD----YNTQKKEFFDRMDDISIKNYIAEDAIRYIE---------QNRDRKYFDWVVMDV 1401
Query: 4216 EILNQRITNXXXXXXXXXXXXSSTYKMKPWVIPXXXXXXXXXXXXXXXXXXXXXXXGFIP 4395
+I N I+N Y+ KPW+IP
Sbjct: 1402 KIQNNSISNLQFSFFFKFLRFYDAYRNKPWIIPIKFLFLHFSVNQNFNKI---------- 1451
Query: 4396 SNEKESLRFYNLNKE-EKESAGQVELESDKETKRN-------PEAARLNQEKNIEENFAE 4551
N E R ++ K +K+ +VELE+ K+ + + NQEK+IEE++ E
Sbjct: 1452 KNIIEKKRRIDIFKPWKKKKILEVELETPNRAKKEYTSRVDLNKPSLSNQEKDIEEDYGE 1511
Query: 4552 STIXXXXXXXXXX---SNTEAELDLFLTRYSRFQLRWNCFFNQKILNNVKVYCLLVRLNN 4722
S + EAE++L L +Y F L W N++++NNVKVYCLL+RL N
Sbjct: 1512 SDSKKGGKDKNKKKYKNKIEAEVNLLLRKYLNFHLNWKGSLNKRVINNVKVYCLLIRLKN 1571
Query: 4723 PNEIAVSSIERGEMSLDILMI--EKNFTFA------KLMKKGILIIEPVRLSVQNDGQLI 4878
+IA+SSI+RGE+SLDI+MI EK+ T + ++KGI IIEPVRLS +N+ Q
Sbjct: 1572 IKQIAISSIQRGELSLDIMMIQNEKDSTLTGFRKKKEFIEKGIFIIEPVRLSRKNNEQFF 1631
Query: 4879 IYRTIGISLVXXXXXXXXXXXXXXXXXXXXFFEKSI--TKYQNKTVNKKKNNYDFFVPEK 5052
+Y T + L+ F K+I + Q T NK+K +Y V E
Sbjct: 1632 MYETARLLLIHKSKRQINQRNPEKSDLDKQIFYKNIPPKRDQRITQNKEKKHYALVVIEN 1691
Query: 5053 ILSPKRRREFRILICFNLKKKNARDTNSRFD--KNIQNLTTVLHXXXXXXXXXXXXXXXX 5226
ILS +RRRE RILICFN + N+ + FD I N V
Sbjct: 1692 ILSARRRRELRILICFNPRSINSMPRKTIFDNENKINNCCQVF--AKNKDLDKEKKILMN 1749
Query: 5227 XXSFLWPNFKLEDLACMNRYWFNTTNGNHFSMIRIRMYTR 5346
LWPN++LEDLAC+NRYWF+T NG+ FS++RI MY R
Sbjct: 1750 LKLILWPNYRLEDLACINRYWFDTYNGSRFSIVRIHMYPR 1789
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 137
effective length of database: 246,871,776
effective search space used: 407091558624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)