BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ycf5.f
(987 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA84436.1| ycf5 [Arabidopsis thaliana]|gi|6685287|sp|P... 601 e-171
ref|NP_054987.1| cytochrome c biogenesis protein [Spinacia ... 427 e-118
dbj|BAB33244.1| hypothetical protein [Lotus japonicus]|gi|1... 416 e-115
emb|CAB67219.1| Ycf5 protein [Oenothera elata subsp. hooker... 409 e-113
sp|P12216|CCSA_TOBAC Cytochrome c biogenesis protein ccsA|g... 404 e-111
>dbj|BAA84436.1| ycf5 [Arabidopsis thaliana]|gi|6685287|sp|P56770|CCSA_ARATH
Cytochrome c biogenesis protein
ccsA|gi|7525084|ref|NP_051108.1| cytochrome c biogenesis
protein [Arabidopsis thaliana]
Length = 328
Score = 601 bits (1550), Expect = e-171
Identities = 299/328 (91%), Positives = 299/328 (91%)
Frame = +1
Query: 1 MIFSILEHILTHISFSVVSIVLTIYFLTLLVNLDEIIGFFDSSDKXXXXXXXXXXXXXXX 180
MIFSILEHILTHISFSVVSIVLTIYFLTLLVNLDEIIGFFDSSDK
Sbjct: 1 MIFSILEHILTHISFSVVSIVLTIYFLTLLVNLDEIIGFFDSSDKGIIITFFGITGLLLT 60
Query: 181 RWIYSGHFPLSNLYESLIFLSWAFSIIHMVSYFNKKQQNKLNTITAPSVIFIQGFATSGL 360
RWIYSGHFPLSNLYESLIFLSWAFSIIHMVSYFNKKQQNKLNTITAPSVIFIQGFATSGL
Sbjct: 61 RWIYSGHFPLSNLYESLIFLSWAFSIIHMVSYFNKKQQNKLNTITAPSVIFIQGFATSGL 120
Query: 361 LNKMPQSAILVPALQSQWLMMHVSMMILGYXXXXXXXXXXXXXXVITFRKVGPTFWKKNI 540
LNKMPQSAILVPALQSQWLMMHVSMMILGY VITFRKVGPTFWKKNI
Sbjct: 121 LNKMPQSAILVPALQSQWLMMHVSMMILGYGALLCGSLLSIALLVITFRKVGPTFWKKNI 180
Query: 541 KKNFLLNELFSFDVLYYINERNSILLQQNINFSFSRNYYRYQLIQQLDFWSFRIISLGFI 720
KKNFLLNELFSFDVLYYINERNSILLQQNINFSFSRNYYRYQLIQQLDFWSFRIISLGFI
Sbjct: 181 KKNFLLNELFSFDVLYYINERNSILLQQNINFSFSRNYYRYQLIQQLDFWSFRIISLGFI 240
Query: 721 FLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVALI 900
FLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVALI
Sbjct: 241 FLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVALI 300
Query: 901 GFILIWICYFGVNLLGIGLHSYGSFTSN 984
GFILIWICYFGVNLLGIGLHSYGSFTSN
Sbjct: 301 GFILIWICYFGVNLLGIGLHSYGSFTSN 328
>ref|NP_054987.1| cytochrome c biogenesis protein [Spinacia
oleracea]|gi|7636161|emb|CAB88783.1| ycf5 protein
[Spinacia oleracea]|gi|18203255|sp|Q9M3J1|CCSA_SPIOL
Cytochrome c biogenesis protein ccsA
Length = 323
Score = 427 bits (1098), Expect = e-118
Identities = 212/326 (65%), Positives = 250/326 (76%)
Frame = +1
Query: 1 MIFSILEHILTHISFSVVSIVLTIYFLTLLVNLDEIIGFFDSSDKXXXXXXXXXXXXXXX 180
MIFS LEHILTHISFS VS+V+T++ +TLLVN EI+G ++S +K
Sbjct: 1 MIFSTLEHILTHISFSTVSVVITLHLITLLVN--EIVGLYNSLEKGMLVTFFCITGLLVT 58
Query: 181 RWIYSGHFPLSNLYESLIFLSWAFSIIHMVSYFNKKQQNKLNTITAPSVIFIQGFATSGL 360
RW+Y HFPLS+LYESLIFLSW+F +IHM+ F KK++N LN ITAPS IF QGFATSGL
Sbjct: 59 RWVYWKHFPLSDLYESLIFLSWSFYLIHMIPSFLKKEKNSLNVITAPSAIFTQGFATSGL 118
Query: 361 LNKMPQSAILVPALQSQWLMMHVSMMILGYXXXXXXXXXXXXXXVITFRKVGPTFWKKNI 540
L +M QS ILVPALQSQWLMMHVSMM+LGY +I F+K +
Sbjct: 119 LTEMHQSGILVPALQSQWLMMHVSMMVLGYAALLGGSLLSVTLLIIIFQK---DLIQVFD 175
Query: 541 KKNFLLNELFSFDVLYYINERNSILLQQNINFSFSRNYYRYQLIQQLDFWSFRIISLGFI 720
K+ LLNE F F + YINE+++I+ QN + S+ RNYYR QLI+QLD WS+R+ISLGFI
Sbjct: 176 KRKHLLNESFFFGEIQYINEKSNIV--QNASPSYVRNYYRSQLIEQLDHWSYRVISLGFI 233
Query: 721 FLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVALI 900
FLT+GILSGAVWANE WGSYWNWDPKETWAFITWTIFAIYLHI+TN+N+RG NSAIVA I
Sbjct: 234 FLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHIRTNKNLRGANSAIVAFI 293
Query: 901 GFILIWICYFGVNLLGIGLHSYGSFT 978
GF++IWICYFGVNLLGIGLHSYGSFT
Sbjct: 294 GFLIIWICYFGVNLLGIGLHSYGSFT 319
>dbj|BAB33244.1| hypothetical protein [Lotus
japonicus]|gi|18202720|sp|Q9BBP4|CCSA_LOTJA Cytochrome c
biogenesis protein ccsA|gi|13518486|ref|NP_084844.1|
hypothetical protein [Lotus japonicus]
Length = 323
Score = 416 bits (1069), Expect = e-115
Identities = 214/330 (64%), Positives = 247/330 (74%), Gaps = 2/330 (0%)
Frame = +1
Query: 1 MIFSILEHILTHISFSVVSIVLTIYFLTLLVNLDEIIGFFDSSDKXXXXXXXXXXXXXXX 180
MIFS LEHILTHISFSVVSIV++I+ +TL VN +I+GF+DSS K
Sbjct: 1 MIFSTLEHILTHISFSVVSIVISIHLITLFVN--QIVGFYDSSKKGMIITFLCITGLLIT 58
Query: 181 RWIYSGHFPLSNLYESLIFLSWAFSIIHMVSYFNKKQQNKLNTITAPSVIFIQGFATSGL 360
RW +SGH P S+LYESLIFLSW FSI +MV F KKQ+N L+TI APSVIF QGFATSGL
Sbjct: 59 RWFFSGHLPFSDLYESLIFLSWGFSIFYMVPRF-KKQKNDLSTIIAPSVIFTQGFATSGL 117
Query: 361 LNKMPQSAILVPALQSQWLMMHVSMMILGYXXXXXXXXXXXXXXVITFRKVGPTFWKKNI 540
L +M QS ILVPALQS WLMMHVSMMILGY VITF+++ P K
Sbjct: 118 LTEMHQSVILVPALQSHWLMMHVSMMILGYAALLCGSLLSVAILVITFQELIPILGKS-- 175
Query: 541 KKNFLLNELFSFDVLYYIN--ERNSILLQQNINFSFSRNYYRYQLIQQLDFWSFRIISLG 714
K+ L E F + + YIN ERN++L + +FS RNYYRYQ IQQLD W +RIISLG
Sbjct: 176 KRLSFLYESFDYAEIKYINMNERNNVL--RKTSFSSYRNYYRYQFIQQLDRWGYRIISLG 233
Query: 715 FIFLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVA 894
FIFLT+GILSGAVWANE WGSYWNWDPKETWAFITWTIFAIYLH + N+ + G+NS+IVA
Sbjct: 234 FIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRKNKKLEGLNSSIVA 293
Query: 895 LIGFILIWICYFGVNLLGIGLHSYGSFTSN 984
IGF++IWICYFGVNLLGIGLH+YGSFTSN
Sbjct: 294 SIGFLIIWICYFGVNLLGIGLHNYGSFTSN 323
>emb|CAB67219.1| Ycf5 protein [Oenothera elata subsp.
hookeri]|gi|18203288|sp|Q9MTI2|CCSA_OENHO Cytochrome c
biogenesis protein ccsA|gi|13518392|ref|NP_084751.1|
cytochrome c biogenesis protein [Oenothera elata subsp.
hookeri]
Length = 319
Score = 409 bits (1052), Expect = e-113
Identities = 211/325 (64%), Positives = 242/325 (73%)
Frame = +1
Query: 1 MIFSILEHILTHISFSVVSIVLTIYFLTLLVNLDEIIGFFDSSDKXXXXXXXXXXXXXXX 180
MIF LEHILTHISFS+VSI +TI+ +TL V DEIIG +DSS+K
Sbjct: 1 MIFYTLEHILTHISFSLVSIGITIFLITLSV--DEIIGLYDSSEKGVIGTFLCITGLLVT 58
Query: 181 RWIYSGHFPLSNLYESLIFLSWAFSIIHMVSYFNKKQQNKLNTITAPSVIFIQGFATSGL 360
RW YSGHFPLSNLYESL+FLSW+F+IIHM YF KKQ++ + TIT+ S IF QG TSGL
Sbjct: 59 RWAYSGHFPLSNLYESLLFLSWSFAIIHMFPYF-KKQKSYVRTITSSSTIFTQGLVTSGL 117
Query: 361 LNKMPQSAILVPALQSQWLMMHVSMMILGYXXXXXXXXXXXXXXVITFRKVGPTFWKKNI 540
L++M QS ILVPALQSQWLMMHVSMM+LGY VITFRK F KK
Sbjct: 118 LSEMQQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKALRIFSKKKA 177
Query: 541 KKNFLLNELFSFDVLYYINERNSILLQQNINFSFSRNYYRYQLIQQLDFWSFRIISLGFI 720
L + FSF + Y NE +++LL + +F S+NYYR QLIQQLD WS RIISLGFI
Sbjct: 178 ----FLKDSFSFVEIQYRNEPSNVLL--STSFISSKNYYRAQLIQQLDRWSSRIISLGFI 231
Query: 721 FLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVALI 900
FLT+GILSGAVWANE WGSYWNWDPKETWAFITWT+FAIYLH +TN N + +NSAIVA +
Sbjct: 232 FLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTMFAIYLHTRTNPNFQSVNSAIVAFL 291
Query: 901 GFILIWICYFGVNLLGIGLHSYGSF 975
GFI+IWICYFGVNLLGIGLHSYGSF
Sbjct: 292 GFIIIWICYFGVNLLGIGLHSYGSF 316
>sp|P12216|CCSA_TOBAC Cytochrome c biogenesis protein ccsA|gi|225254|prf||1211235CN ORF
313|gi|82213|pir||A05213 cytochrome c-type synthesis
protein homolog - common tobacco
chloroplast|gi|11466014|ref|NP_054556.1| cytochrome c
biogenesis protein [Nicotiana
tabacum]|gi|1223666|emb|CAA77395.1| c-type cytochrome
synthesis protein [Nicotiana tabacum]
Length = 313
Score = 404 bits (1037), Expect = e-111
Identities = 207/327 (63%), Positives = 241/327 (73%)
Frame = +1
Query: 1 MIFSILEHILTHISFSVVSIVLTIYFLTLLVNLDEIIGFFDSSDKXXXXXXXXXXXXXXX 180
MIFS LEHILTHISFS+VSIV+TI+ +T LV DEI+ +DSS+K
Sbjct: 1 MIFSTLEHILTHISFSIVSIVITIHLITFLV--DEIVKLYDSSEKGIIVTFFCITGLLVT 58
Query: 181 RWIYSGHFPLSNLYESLIFLSWAFSIIHMVSYFNKKQQNKLNTITAPSVIFIQGFATSGL 360
RWI SGHFPLS+LYESLIFLSW+FS+IH++ YF KK L+ IT PS IF QGFATSG+
Sbjct: 59 RWISSGHFPLSDLYESLIFLSWSFSLIHIIPYF-KKNVLILSKITGPSAIFTQGFATSGI 117
Query: 361 LNKMPQSAILVPALQSQWLMMHVSMMILGYXXXXXXXXXXXXXXVITFRKVGPTFWKKNI 540
L ++ QS ILVPALQS+WL+MHVSMMILGY VITFRK F+K N
Sbjct: 118 LTEIHQSVILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNRQLFYKSN- 176
Query: 541 KKNFLLNELFSFDVLYYINERNSILLQQNINFSFSRNYYRYQLIQQLDFWSFRIISLGFI 720
LNE F ++ E + QN +F ++NYYR QLIQQLD+WS+R+ISLGF
Sbjct: 177 ---GFLNESF------FLGEN----VLQNTSFFSAKNYYRSQLIQQLDYWSYRVISLGFT 223
Query: 721 FLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVALI 900
FLT+GILSGAVWANE WGSYWNWDPKETWAFITW +FAIYLH +TNRN+RG NSAIVA I
Sbjct: 224 FLTIGILSGAVWANEAWGSYWNWDPKETWAFITWIVFAIYLHTRTNRNLRGANSAIVASI 283
Query: 901 GFILIWICYFGVNLLGIGLHSYGSFTS 981
GF++IWICYFGVNLLGIGLHSYGSF S
Sbjct: 284 GFLIIWICYFGVNLLGIGLHSYGSFPS 310
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 123
effective length of database: 265,739,758
effective search space used: 54476650390
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)