BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ycf1.f
(1032 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA84445.1| ycf1 [Arabidopsis thaliana]|gi|6686164|sp|P... 656 0.0
dbj|BAA84433.1| ycf1 [Arabidopsis thaliana]|gi|7525081|ref|... 656 0.0
emb|CAB88792.1| ycf1 protein [Spinacia oleracea]|gi|1149758... 495 e-139
emb|CAB88779.1| hypothetical protein [Spinacia oleracea]|gi... 495 e-139
sp|P12222|YCF1_TOBAC Hypothetical 226 kDa protein ycf1 (ORF... 482 e-135
>dbj|BAA84445.1| ycf1 [Arabidopsis thaliana]|gi|6686164|sp|P56785|YCF1_ARATH
Hypothetical 213.7 kDa protein
ycf1|gi|7525093|ref|NP_051117.1| ycf1 [Arabidopsis
thaliana]
Length = 1786
Score = 656 bits (1692), Expect = 0.0
Identities = 330/343 (96%), Positives = 331/343 (96%)
Frame = +1
Query: 1 VMVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEK 180
+MVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEK
Sbjct: 1 MMVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEK 60
Query: 181 KVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLXXXXXXXXXXXXDYGST 360
KVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLL DYGST
Sbjct: 61 KVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDYGST 120
Query: 361 TRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLI 540
TRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLI
Sbjct: 121 TRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLI 180
Query: 541 GHILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYL 720
GHILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYL
Sbjct: 181 GHILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYL 240
Query: 721 GRIPSPIFTKKLKGTSETGGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKD 900
GRIPSPIFTKKLKGTSETGGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKD
Sbjct: 241 GRIPSPIFTKKLKGTSETGGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKD 300
Query: 901 KINKDDEFHVRTYYNYKTVSENLYGNKENSNLEFFKIKKKEDH 1029
KINKDDEFHVRTYYNYKTVSENLYGNKENSNLEFFKIKKKEDH
Sbjct: 301 KINKDDEFHVRTYYNYKTVSENLYGNKENSNLEFFKIKKKEDH 343
>dbj|BAA84433.1| ycf1 [Arabidopsis thaliana]|gi|7525081|ref|NP_051105.1| ycf1
[Arabidopsis thaliana]
Length = 343
Score = 656 bits (1692), Expect = 0.0
Identities = 330/343 (96%), Positives = 331/343 (96%)
Frame = +1
Query: 1 VMVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEK 180
+MVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEK
Sbjct: 1 MMVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEK 60
Query: 181 KVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLXXXXXXXXXXXXDYGST 360
KVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLL DYGST
Sbjct: 61 KVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDYGST 120
Query: 361 TRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLI 540
TRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLI
Sbjct: 121 TRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLI 180
Query: 541 GHILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYL 720
GHILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYL
Sbjct: 181 GHILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYL 240
Query: 721 GRIPSPIFTKKLKGTSETGGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKD 900
GRIPSPIFTKKLKGTSETGGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKD
Sbjct: 241 GRIPSPIFTKKLKGTSETGGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKD 300
Query: 901 KINKDDEFHVRTYYNYKTVSENLYGNKENSNLEFFKIKKKEDH 1029
KINKDDEFHVRTYYNYKTVSENLYGNKENSNLEFFKIKKKEDH
Sbjct: 301 KINKDDEFHVRTYYNYKTVSENLYGNKENSNLEFFKIKKKEDH 343
>emb|CAB88792.1| ycf1 protein [Spinacia oleracea]|gi|11497589|ref|NP_054996.1| ycf1
protein [Spinacia oleracea]
Length = 1833
Score = 495 bits (1274), Expect = e-139
Identities = 266/356 (74%), Positives = 283/356 (78%), Gaps = 17/356 (4%)
Frame = +1
Query: 4 MVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKK 183
M+FQSF+LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRA+VM+EGEEGTEKK
Sbjct: 1 MIFQSFLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRAQVMEEGEEGTEKK 60
Query: 184 VSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLXXXXXXXXXXXXDYGSTT 363
VS TTGFI GQLMMFISIYY PLHLALGRPHTITVLALPYLL DYGST+
Sbjct: 61 VSGTTGFIMGQLMMFISIYYTPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDYGSTS 120
Query: 364 RNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 543
RN MRNL IQCVFLNNLIFQLFN+FILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG
Sbjct: 121 RNSMRNLSIQCVFLNNLIFQLFNYFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 180
Query: 544 HILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYLG 723
HILFMKWVGLVLVWIQQNNSIRSN K+LVSELRNSMARIFSIL FITCVYYLG
Sbjct: 181 HILFMKWVGLVLVWIQQNNSIRSN--------KYLVSELRNSMARIFSILFFITCVYYLG 232
Query: 724 RIPSPIFTKKLK-----------------GTSETGGTKQDQEVSTEEAPFPSLFSEEGED 852
R+PSPIFT KLK TSET TKQ++E TEE P PSLFSEE ED
Sbjct: 233 RMPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSEEKED 292
Query: 853 LDKIDEMEEIRVNGKDKINKDDEFHVRTYYNYKTVSENLYGNKENSNLEFFKIKKK 1020
DKIDE E+IRVNGKDK DEFH++ YK + GN++ S LE K +KK
Sbjct: 293 PDKIDETEKIRVNGKDKTK--DEFHLKEAC-YKNSPTSYSGNQDISKLEILKKEKK 345
>emb|CAB88779.1| hypothetical protein [Spinacia
oleracea]|gi|18203257|sp|Q9M3J5|YCF1_SPIOL Hypothetical
56.9 kDa protein ycf1|gi|11497576|ref|NP_054983.1|
hypothetical protein [Spinacia oleracea]
Length = 481
Score = 495 bits (1274), Expect = e-139
Identities = 266/356 (74%), Positives = 283/356 (78%), Gaps = 17/356 (4%)
Frame = +1
Query: 4 MVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKK 183
M+FQSF+LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRA+VM+EGEEGTEKK
Sbjct: 1 MIFQSFLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRAQVMEEGEEGTEKK 60
Query: 184 VSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLXXXXXXXXXXXXDYGSTT 363
VS TTGFI GQLMMFISIYY PLHLALGRPHTITVLALPYLL DYGST+
Sbjct: 61 VSGTTGFIMGQLMMFISIYYTPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDYGSTS 120
Query: 364 RNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 543
RN MRNL IQCVFLNNLIFQLFN+FILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG
Sbjct: 121 RNSMRNLSIQCVFLNNLIFQLFNYFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 180
Query: 544 HILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYLG 723
HILFMKWVGLVLVWIQQNNSIRSN K+LVSELRNSMARIFSIL FITCVYYLG
Sbjct: 181 HILFMKWVGLVLVWIQQNNSIRSN--------KYLVSELRNSMARIFSILFFITCVYYLG 232
Query: 724 RIPSPIFTKKLK-----------------GTSETGGTKQDQEVSTEEAPFPSLFSEEGED 852
R+PSPIFT KLK TSET TKQ++E TEE P PSLFSEE ED
Sbjct: 233 RMPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEEEGFTEEDPSPSLFSEEKED 292
Query: 853 LDKIDEMEEIRVNGKDKINKDDEFHVRTYYNYKTVSENLYGNKENSNLEFFKIKKK 1020
DKIDE E+IRVNGKDK DEFH++ YK + GN++ S LE K +KK
Sbjct: 293 PDKIDETEKIRVNGKDKTK--DEFHLKEAC-YKNSPTSYSGNQDISKLEILKKEKK 345
>sp|P12222|YCF1_TOBAC Hypothetical 226 kDa protein ycf1 (ORF 1901)
Length = 1901
Score = 482 bits (1240), Expect = e-135
Identities = 267/370 (72%), Positives = 283/370 (76%), Gaps = 33/370 (8%)
Frame = +1
Query: 4 MVFQSFILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKK 183
M+FQSF+LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRA VM EEGTEKK
Sbjct: 1 MIFQSFLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRALVM---EEGTEKK 57
Query: 184 VSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLXXXXXXXXXXXXDYGSTT 363
VSATTGFI GQLMMFISIYYAPLHLALGRPHTITVLALPYLL DYGSTT
Sbjct: 58 VSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDYGSTT 117
Query: 364 RNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 543
RN MRNL IQCVFLNNLIFQLFNHFILPSSMLARLVNIY+FRCN+K+LFVTS FVGWLIG
Sbjct: 118 RNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYLFRCNSKILFVTSGFVGWLIG 177
Query: 544 HILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYLG 723
HILFMKW+GLVLVWI+QN+SIRSN IRSNKY LV ELRNSMARIFSILLFITCVYYLG
Sbjct: 178 HILFMKWLGLVLVWIRQNHSIRSNKYIRSNKY--LVLELRNSMARIFSILLFITCVYYLG 235
Query: 724 RIPSPIFTKKLKGTSET--------------------GGTKQDQEVSTEEAPF--PSLFS 837
RIPSPI TKKLK S+T GTKQ+QE STEE P+ PSLFS
Sbjct: 236 RIPSPILTKKLKEASKTEERVESEEERDVEIETASEMKGTKQEQEGSTEEDPYPSPSLFS 295
Query: 838 EEGEDLDKIDEMEEIRVNGKDKINKDDEFHVRT----YYNYKTVSENLY-------GNKE 984
EE D DKIDE EEIRVNGKDKI D+FH Y N T + +Y N
Sbjct: 296 EERWDPDKIDETEEIRVNGKDKIK--DKFHSHLTETGYNNINTSNSPIYDYEDSYLNNNN 353
Query: 985 NSNLEFFKIK 1014
N E FK++
Sbjct: 354 TGNTEIFKLQ 363
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 124
effective length of database: 264,392,045
effective search space used: 57901857855
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)