BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rps7.f
(447 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178787.1| hypothetical protein; protein id: At2g0769... 297 2e-80
ref|NP_064059.1| ribosomal protein S7 [Beta vulgaris]|gi|90... 269 5e-72
prf||1908383A ribosomal protein S7|gi|14348|emb|CAA47667.1|... 268 1e-71
pir||S34782 ribosomal protein S7 - wheat mitochondrion 265 7e-71
dbj|BAC19857.1| Ribosomal protein S7 [Oryza sativa (japonic... 265 9e-71
>ref|NP_178787.1| hypothetical protein; protein id: At2g07696.1 [Arabidopsis
thaliana]|gi|20198272|gb|AAM15488.1| hypothetical
protein [Arabidopsis
thaliana]|gi|13449397|ref|NP_085579.1| ribosomal protein
S7 [Arabidopsis thaliana]|gi|1785780|emb|CAA69810.1|
ribosomal protein S7 [Arabidopsis
thaliana]|gi|2829760|sp|P92557|RT07_ARATH Mitochondrial
ribosomal protein S7
Length = 148
Score = 297 bits (760), Expect = 2e-80
Identities = 148/148 (100%), Positives = 148/148 (100%)
Frame = +1
Query: 1 MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 180
MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI
Sbjct: 1 MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 60
Query: 181 CEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQ 360
CEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQ
Sbjct: 61 CEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQ 120
Query: 361 KRGSARRKRENLHGLASTNRSFAHFRWW 444
KRGSARRKRENLHGLASTNRSFAHFRWW
Sbjct: 121 KRGSARRKRENLHGLASTNRSFAHFRWW 148
>ref|NP_064059.1| ribosomal protein S7 [Beta vulgaris]|gi|9087307|dbj|BAA99451.1|
ribosomal protein S7 [Beta vulgaris]
Length = 148
Score = 269 bits (688), Expect = 5e-72
Identities = 133/148 (89%), Positives = 139/148 (93%)
Frame = +1
Query: 1 MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 180
MGGLD EQK LIKKLVNF MKEGKRT+VRAIVYQTFHRPARTE DVIKLM+DAVENIKPI
Sbjct: 1 MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRPARTEGDVIKLMIDAVENIKPI 60
Query: 181 CEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQ 360
C+V KV VAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSF EILDAY+
Sbjct: 61 CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYR 120
Query: 361 KRGSARRKRENLHGLASTNRSFAHFRWW 444
KRG +R+KRENLHGLAS NRSFAHFRWW
Sbjct: 121 KRGISRKKRENLHGLASANRSFAHFRWW 148
>prf||1908383A ribosomal protein S7|gi|14348|emb|CAA47667.1| ribosomal protein S7
[Triticum aestivum]|gi|266982|sp|Q01902|RT07_WHEAT
Mitochondrial ribosomal protein S7
Length = 148
Score = 268 bits (684), Expect = 1e-71
Identities = 133/148 (89%), Positives = 140/148 (93%)
Frame = +1
Query: 1 MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 180
MG DGEQK LIKKLVNFRM +GKRTRVRAIVY+TFHR ARTERDVIKLMVDAV+NIKPI
Sbjct: 1 MGDFDGEQKELIKKLVNFRMIDGKRTRVRAIVYKTFHRLARTERDVIKLMVDAVDNIKPI 60
Query: 181 CEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQ 360
CEV KVGVAGTIYDVPGIVARDRQQTLAIRWIL AAFKRRISYRISLEKCSFAEILDAY+
Sbjct: 61 CEVVKVGVAGTIYDVPGIVARDRQQTLAIRWILGAAFKRRISYRISLEKCSFAEILDAYR 120
Query: 361 KRGSARRKRENLHGLASTNRSFAHFRWW 444
KRG +R++RENLHGLASTNRSFAHFRWW
Sbjct: 121 KRGISRKRRENLHGLASTNRSFAHFRWW 148
>pir||S34782 ribosomal protein S7 - wheat mitochondrion
Length = 148
Score = 265 bits (678), Expect = 7e-71
Identities = 132/148 (89%), Positives = 139/148 (93%)
Frame = +1
Query: 1 MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 180
MG DGEQK LIKKLVNFRM +GKRTRVRAIVY+TFHR ARTERDVIKLMVDAV+NIKPI
Sbjct: 1 MGDFDGEQKELIKKLVNFRMIDGKRTRVRAIVYKTFHRLARTERDVIKLMVDAVDNIKPI 60
Query: 181 CEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQ 360
CEV KVGVAGTIYDVPGIVARDRQQTLAIRWIL AAFKRRISYRISLEKC FAEILDAY+
Sbjct: 61 CEVVKVGVAGTIYDVPGIVARDRQQTLAIRWILGAAFKRRISYRISLEKCLFAEILDAYR 120
Query: 361 KRGSARRKRENLHGLASTNRSFAHFRWW 444
KRG +R++RENLHGLASTNRSFAHFRWW
Sbjct: 121 KRGISRKRRENLHGLASTNRSFAHFRWW 148
>dbj|BAC19857.1| Ribosomal protein S7 [Oryza sativa (japonica cultivar-group)]
Length = 148
Score = 265 bits (677), Expect = 9e-71
Identities = 132/148 (89%), Positives = 139/148 (93%)
Frame = +1
Query: 1 MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 180
MG DGEQK LIKKLVNFRM +GKRTRVRAIVY+TFHR ARTERDVIKLMVDAV+NIKPI
Sbjct: 1 MGDFDGEQKELIKKLVNFRMIDGKRTRVRAIVYKTFHRLARTERDVIKLMVDAVDNIKPI 60
Query: 181 CEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQ 360
CEV KVGVAGTIYDVPGIVARDRQQTLAIRWIL AAFKRRISYRISLEKCSFAEILDAY+
Sbjct: 61 CEVVKVGVAGTIYDVPGIVARDRQQTLAIRWILGAAFKRRISYRISLEKCSFAEILDAYR 120
Query: 361 KRGSARRKRENLHGLASTNRSFAHFRWW 444
KRG +R++R NLHGLASTNRSFAHFRWW
Sbjct: 121 KRGISRKRRGNLHGLASTNRSFAHFRWW 148
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 124
effective length of database: 264,392,045
effective search space used: 6345409080
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)