BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rps19.f
         (279 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_051098.1|  ribosomal protein S19 [Arabidopsis thalian...   187   4e-47
pir||R3SY19  ribosomal protein S19 - soybean chloroplast|gi|...   175   1e-43
pir||R3SP19  ribosomal protein S19 - spinach chloroplast|gi|...   174   2e-43
gb|AAN04887.1|  ribosomal protein S19 [Vigna angularis]|gi|2...   174   2e-43
prf||1211235BV  ribosomal protein S19                             174   4e-43

>ref|NP_051098.1| ribosomal protein S19 [Arabidopsis
           thaliana]|gi|6685923|sp|P56808|RR19_ARATH Chloroplast
           30S ribosomal protein S19|gi|5881734|dbj|BAA84425.1|
           ribosomal protein S19 [Arabidopsis thaliana]
          Length = 92

 Score =  187 bits (474), Expect = 4e-47
 Identities = 91/92 (98%), Positives = 92/92 (99%)
 Frame = +1

Query: 1   VTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPV 180
           +TRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPV
Sbjct: 1   MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPV 60

Query: 181 YIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 276
           YIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR
Sbjct: 61  YIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92



>pir||R3SY19 ribosomal protein S19 - soybean
           chloroplast|gi|13509290|emb|CAA29736.2| rps19 [Glycine
           max]|gi|133860|sp|P07816|RR19_SOYBN Chloroplast 30S
           ribosomal protein S19
          Length = 92

 Score =  175 bits (444), Expect = 1e-43
 Identities = 83/92 (90%), Positives = 88/92 (95%)
 Frame = +1

Query: 1   VTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPV 180
           +TRSLKKNPFVA HLLRKI KLNTKAEK+IIITWSRASTIIPTMIGHTIAIHNG+EHLP+
Sbjct: 1   MTRSLKKNPFVANHLLRKINKLNTKAEKDIIITWSRASTIIPTMIGHTIAIHNGKEHLPI 60

Query: 181 YIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 276
           YI D MVGHKLGEFSPT+NFRGHAKNDNRSRR
Sbjct: 61  YITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92



>pir||R3SP19 ribosomal protein S19 - spinach
           chloroplast|gi|13518297|ref|NP_077750.1| ribosomal
           protein S19 [Spinacia
           oleracea]|gi|7799312|emb|CAB91049.1| ribosomal protein
           S19 [Spinacia oleracea]|gi|13513065|emb|CAA31713.2|
           ribosomal protein S19 [Spinacia
           oleracea]|gi|133861|sp|P06508|RR19_SPIOL ChloroplasT 30S
           ribosomal protein S19 alpha (CS-S23)
          Length = 92

 Score =  174 bits (442), Expect = 2e-43
 Identities = 82/92 (89%), Positives = 88/92 (95%)
 Frame = +1

Query: 1   VTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPV 180
           +TRSLKKNPFVA HLLRKIEKLN KAEKEII+TWSRASTIIPTMIGHTIAIHNGREHLP+
Sbjct: 1   MTRSLKKNPFVANHLLRKIEKLNKKAEKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPI 60

Query: 181 YIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 276
           YI D MVGHKLGEF+PT+NFRGHAKNDN+SRR
Sbjct: 61  YITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92



>gb|AAN04887.1| ribosomal protein S19 [Vigna angularis]|gi|22725688|gb|AAN04894.1|
           ribosomal protein S19 [Vigna angularis]
          Length = 92

 Score =  174 bits (442), Expect = 2e-43
 Identities = 82/92 (89%), Positives = 88/92 (95%)
 Frame = +1

Query: 1   VTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPV 180
           +TRSLKKNPFVA HLLRKI KLNTKAEK+II+TWSRASTIIPTMIGHTIAIHNG+EHLP+
Sbjct: 1   MTRSLKKNPFVANHLLRKINKLNTKAEKDIILTWSRASTIIPTMIGHTIAIHNGKEHLPI 60

Query: 181 YIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 276
           YI D MVGHKLGEFSPT+NFRGHAKNDNRSRR
Sbjct: 61  YITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92



>prf||1211235BV ribosomal protein S19
          Length = 92

 Score =  174 bits (440), Expect = 4e-43
 Identities = 81/92 (88%), Positives = 89/92 (96%)
 Frame = +1

Query: 1   VTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPV 180
           VTRSLKKNPFVA HLL+KI+KLNTKAEKEII+TWSRASTIIPTMIGHTIAIHNG+EHLP+
Sbjct: 1   VTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPI 60

Query: 181 YIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 276
           YI D MVGHKLGEF+PT+NFRGHAK+DNRSRR
Sbjct: 61  YITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 68
effective length of database: 339,863,973
effective search space used: 8156735352
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)