BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rps8.f
(405 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA84420.1| ribosomal protein S8 [Arabidopsis thaliana]... 264 2e-70
sp|Q8S8V8|RR8_ATRBE Chloroplast 30S ribosomal protein S8|gi... 229 5e-60
emb|CAA77378.1| ribosomal protein S8 [Nicotiana tabacum]|gi... 228 2e-59
gb|AAF19197.1|AF206521_1 ribosomal protein S8 [Spinacia ole... 224 2e-58
sp|P59033|RR8_PHAAN Chloroplast 30S ribosomal protein S8|gi... 219 5e-57
>dbj|BAA84420.1| ribosomal protein S8 [Arabidopsis
thaliana]|gi|6685916|sp|P56801|RR8_ARATH Chloroplast 30S
ribosomal protein S8|gi|7525068|ref|NP_051093.1|
ribosomal protein S8 [Arabidopsis thaliana]
Length = 134
Score = 264 bits (674), Expect = 2e-70
Identities = 134/134 (100%), Positives = 134/134 (100%)
Frame = +1
Query: 1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLI 180
MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLI
Sbjct: 1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLI 60
Query: 181 LTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREA 360
LTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREA
Sbjct: 61 LTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREA 120
Query: 361 RLKRIGGEILCYIW 402
RLKRIGGEILCYIW
Sbjct: 121 RLKRIGGEILCYIW 134
>sp|Q8S8V8|RR8_ATRBE Chloroplast 30S ribosomal protein S8|gi|28261752|ref|NP_783266.1|
ribosomal protein S8 [Atropa
belladonna]|gi|20068366|emb|CAC88079.1| ribosomal
protein S8 [Atropa belladonna]
Length = 134
Score = 229 bits (585), Expect = 5e-60
Identities = 114/134 (85%), Positives = 126/134 (93%)
Frame = +1
Query: 1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLI 180
MG+DTIA+IITSIRNADM+RK VRI STNITE+IV+ILLREGFIENVRKH+ENN+YFL+
Sbjct: 1 MGRDTIAEIITSIRNADMDRKRVVRIASTNITENIVQILLREGFIENVRKHQENNKYFLV 60
Query: 181 LTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREA 360
LTLRHRRNKK Y+ ILNLKRISRPGLRIYSN QRIPRILGG+GIVILSTS+GIMTDREA
Sbjct: 61 LTLRHRRNKKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREA 120
Query: 361 RLKRIGGEILCYIW 402
RL+ IGGEILCYIW
Sbjct: 121 RLEGIGGEILCYIW 134
>emb|CAA77378.1| ribosomal protein S8 [Nicotiana
tabacum]|gi|134025|sp|P06363|RR8_TOBAC Chloroplast 30S
ribosomal protein S8|gi|225232|prf||1211235BP ribosomal
protein S8|gi|11465992|ref|NP_054534.1| ribosomal
protein S8 [Nicotiana tabacum]|gi|70913|pir||R3NT8
ribosomal protein S8 - common tobacco chloroplast
Length = 134
Score = 228 bits (580), Expect = 2e-59
Identities = 113/134 (84%), Positives = 125/134 (92%)
Frame = +1
Query: 1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLI 180
MG+DTIA+IITSIRNADM+RK VRI STNITE+IV+ILLREGFIENVRKHRE N+YFL+
Sbjct: 1 MGRDTIAEIITSIRNADMDRKRVVRIASTNITENIVQILLREGFIENVRKHREKNKYFLV 60
Query: 181 LTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREA 360
LTLRHRRN+K Y+ ILNLKRISRPGLRIYSN QRIPRILGG+GIVILSTS+GIMTDREA
Sbjct: 61 LTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREA 120
Query: 361 RLKRIGGEILCYIW 402
RL+ IGGEILCYIW
Sbjct: 121 RLEGIGGEILCYIW 134
>gb|AAF19197.1|AF206521_1 ribosomal protein S8 [Spinacia
oleracea]|gi|11497562|ref|NP_054970.1| ribosomal protein
S8 [Spinacia oleracea]|gi|7636143|emb|CAB88763.1|
ribosomal protein S8 [Spinacia
oleracea]|gi|14286152|sp|P09597|RR8_SPIOL Chloroplast
30S ribosomal protein S8
Length = 134
Score = 224 bits (571), Expect = 2e-58
Identities = 112/134 (83%), Positives = 121/134 (89%)
Frame = +1
Query: 1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLI 180
MGKDTIADIIT IRNADMNRKGTVRI STNITE+IVKILLREGFIEN RKH+E N+YFL+
Sbjct: 1 MGKDTIADIITCIRNADMNRKGTVRIVSTNITENIVKILLREGFIENARKHQERNKYFLV 60
Query: 181 LTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREA 360
LTLRHRRNKK Y +LKR+SRPGLRIYSN QRIPRILGG+GI ILSTS+GIMTDREA
Sbjct: 61 LTLRHRRNKKGPYLNTFHLKRVSRPGLRIYSNYQRIPRILGGMGIAILSTSRGIMTDREA 120
Query: 361 RLKRIGGEILCYIW 402
RL+ IGGEILCYIW
Sbjct: 121 RLEGIGGEILCYIW 134
>sp|P59033|RR8_PHAAN Chloroplast 30S ribosomal protein S8|gi|22725689|gb|AAN04895.1|
ribosomal protein S8 [Vigna angularis]
Length = 134
Score = 219 bits (559), Expect = 5e-57
Identities = 107/134 (79%), Positives = 123/134 (90%)
Frame = +1
Query: 1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLI 180
MGKDTIA+IIT IRNADMN+KG V++ TNITE IVKILLREGF+EN+RKHRENN+YFL+
Sbjct: 1 MGKDTIANIITYIRNADMNKKGMVQLPFTNITEKIVKILLREGFVENIRKHRENNKYFLV 60
Query: 181 LTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREA 360
LTLR+RRN+KES K LNLKRIS PGLRIY N Q+IPRILGG+GIVILSTS+GIMTDREA
Sbjct: 61 LTLRYRRNRKESSKNFLNLKRISTPGLRIYYNYQQIPRILGGMGIVILSTSRGIMTDREA 120
Query: 361 RLKRIGGEILCYIW 402
RL++IGGE+LCYIW
Sbjct: 121 RLEKIGGEVLCYIW 134
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 110
effective length of database: 283,260,027
effective search space used: 6798240648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)