BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rps18.f
         (306 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA84407.1|  ribosomal protein S18 [Arabidopsis thaliana...   194   2e-49
ref|NP_054957.1|  ribosomal protein S18 [Spinacia oleracea]|...   171   3e-42
pir||R3NT18  ribosomal protein S18 - common tobacco chloropl...   169   6e-42
emb|CAB67179.1|  ribosomal protein S18 [Oenothera elata subs...   160   5e-39
dbj|BAB33218.1|  ribosomal protein S18 [Lotus japonicus]|gi|...   156   7e-38

>dbj|BAA84407.1| ribosomal protein S18 [Arabidopsis
           thaliana]|gi|6685922|sp|P56807|RR18_ARATH Chloroplast
           30S ribosomal protein S18|gi|7525055|ref|NP_051081.1|
           ribosomal protein S18 [Arabidopsis thaliana]
          Length = 101

 Score =  194 bits (493), Expect = 2e-49
 Identities = 101/101 (100%), Positives = 101/101 (100%)
 Frame = +1

Query: 1   MNKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRVTLKQQR 180
           MNKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRVTLKQQR
Sbjct: 1   MNKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRVTLKQQR 60

Query: 181 LITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK 303
           LITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK
Sbjct: 61  LITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK 101



>ref|NP_054957.1| ribosomal protein S18 [Spinacia
           oleracea]|gi|7636130|emb|CAB88750.1| ribosomal protein
           S18 [Spinacia oleracea]|gi|18203259|sp|Q9M3K7|RR18_SPIOL
           Chloroplast 30S ribosomal protein S18
          Length = 101

 Score =  171 bits (432), Expect = 3e-42
 Identities = 88/101 (87%), Positives = 94/101 (92%)
 Frame = +1

Query: 1   MNKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRVTLKQQR 180
           M+KSKR F KSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNR+TLKQQR
Sbjct: 1   MDKSKRPFIKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 181 LITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK 303
           LIT AIKQARILSLLPFLNN+KQFER+EST RT + RT+ K
Sbjct: 61  LITSAIKQARILSLLPFLNNEKQFERTESTTRTANFRTKNK 101



>pir||R3NT18 ribosomal protein S18 - common tobacco
           chloroplast|gi|11465981|ref|NP_054523.1| ribosomal
           protein S18 [Nicotiana tabacum]|gi|11851|emb|CAA77371.1|
           ribosomal protein S18 [Nicotiana
           tabacum]|gi|225220|prf||1211235BB ribosomal protein
           S18|gi|28261739|ref|NP_783254.1| ribosomal protein S18
           [Atropa belladonna]|gi|133841|sp|P06376|RR18_TOBAC
           Chloroplast 30S ribosomal protein
           S18|gi|20068353|emb|CAC88066.1| ribosomal protein S18
           [Atropa belladonna]
          Length = 101

 Score =  169 bits (429), Expect = 6e-42
 Identities = 87/101 (86%), Positives = 93/101 (91%)
 Frame = +1

Query: 1   MNKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRVTLKQQR 180
           M+KSKR F K KRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNR+TLKQQR
Sbjct: 1   MDKSKRPFLKFKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 181 LITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK 303
           LIT+AIKQARILSLLPFLNN+KQFER+EST RTT  + R K
Sbjct: 61  LITLAIKQARILSLLPFLNNEKQFERTESTARTTGFKARNK 101



>emb|CAB67179.1| ribosomal protein S18 [Oenothera elata subsp.
           hookeri]|gi|13518355|ref|NP_084714.1| ribosomal protein
           S18 [Oenothera elata subsp.
           hookeri]|gi|20978740|sp|Q9MTK1|RR18_OENHO Chloroplast
           30S ribosomal protein S18
          Length = 101

 Score =  160 bits (404), Expect = 5e-39
 Identities = 83/101 (82%), Positives = 91/101 (89%)
 Frame = +1

Query: 1   MNKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRVTLKQQR 180
           M+KSKRLF KSKRSFRRRLPPIQSGDRIDYRN+SLISRFIS+QGKILSRRVNR+TLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNISLISRFISQQGKILSRRVNRLTLKQQR 60

Query: 181 LITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK 303
           LITIAI QARILSLLPF    ++F+RS+ST RT  LRTR K
Sbjct: 61  LITIAINQARILSLLPFRPKAQRFKRSQSTARTVGLRTRNK 101



>dbj|BAB33218.1| ribosomal protein S18 [Lotus
           japonicus]|gi|20978734|sp|Q9BBR1|RR18_LOTJA Chloroplast
           30S ribosomal protein S18|gi|13518460|ref|NP_084820.1|
           ribosomal protein S18 [Lotus japonicus]
          Length = 104

 Score =  156 bits (394), Expect = 7e-38
 Identities = 84/104 (80%), Positives = 94/104 (89%), Gaps = 3/104 (2%)
 Frame = +1

Query: 1   MNKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRVTLKQQR 180
           M+KSKRLF KSKR FRRRLPPIQSGDRIDY+NMSLISRFISEQGKILSRRVNR+TLKQQR
Sbjct: 1   MDKSKRLFLKSKRFFRRRLPPIQSGDRIDYKNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 181 LITIAIKQARILSLLPFLNNQ-KQFERSE--STPRTTSLRTRKK 303
           LITIAIKQARILS LPF+NN+ KQFE+SE  +T  TT  +T+K+
Sbjct: 61  LITIAIKQARILSSLPFINNEKKQFEKSELTATRTTTVFKTKKR 104



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 77
effective length of database: 327,734,556
effective search space used: 7865629344
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)