BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ycf4.f
(555 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA84396.1| ycf4 [Arabidopsis thaliana]|gi|6686167|sp|P... 338 2e-92
gb|AAB05669.1| ORF185; hypothetical 21.4 kD protein|gi|2493... 303 9e-82
ref|NP_783243.1| yc4 protein [Atropa belladonna]|gi|2006834... 300 6e-81
ref|NP_054510.1| photosystem I assembly protein Ycf4 [Nicot... 299 1e-80
gb|AAG32309.1|AF284694_4 ycf4 [Carpobrotus chilensis]|gi|18... 294 5e-79
>dbj|BAA84396.1| ycf4 [Arabidopsis thaliana]|gi|6686167|sp|P56788|YCF4_ARATH
Photosystem I assembly protein
ycf4|gi|7525044|ref|NP_051070.1| photosystem I assembly
protein ycf4 [Arabidopsis thaliana]
Length = 184
Score = 338 bits (868), Expect = 2e-92
Identities = 167/184 (90%), Positives = 167/184 (90%)
Frame = +1
Query: 1 MSWRSESIWIEFITGSRKTSNFCWAXXXXXXXXXXXXXXXXXYLGRNVISLFPSQQIIFF 180
MSWRSESIWIEFITGSRKTSNFCWA YLGRNVISLFPSQQIIFF
Sbjct: 1 MSWRSESIWIEFITGSRKTSNFCWAFILFLGSLGFLLVGTSSYLGRNVISLFPSQQIIFF 60
Query: 181 PQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIFLRF 360
PQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIFLRF
Sbjct: 61 PQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIFLRF 120
Query: 361 FMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVP 540
FMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVP
Sbjct: 121 FMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVP 180
Query: 541 IEVF 552
IEVF
Sbjct: 181 IEVF 184
>gb|AAB05669.1| ORF185; hypothetical 21.4 kD
protein|gi|2493696|sp|Q31910|YCF4_BRAOL Photosystem I
assembly protein ycf4|gi|7448362|pir||T14523
hypothetical protein - wild cabbage chloroplast
Length = 185
Score = 303 bits (776), Expect = 9e-82
Identities = 151/185 (81%), Positives = 156/185 (83%), Gaps = 1/185 (0%)
Frame = +1
Query: 1 MSWRSESIWIEFITGSRKTSNFCWAXXXXXXXXXXXXXXXXXYLGRNVISLFPSQQIIFF 180
M+WRSE IWI+ I+GSRK SNFCWA YLGRN+IS FP QQI FF
Sbjct: 1 MTWRSEHIWIDLISGSRKKSNFCWAFLLFLGSLGFVLVGTSSYLGRNLISSFPPQQITFF 60
Query: 181 PQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIFLRF 360
PQG+VMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRI LRF
Sbjct: 61 PQGLVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIVLRF 120
Query: 361 FMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTT-REIEQKAAELAYFLRV 537
MKDIQS R EVKEGVSARRV YMEIRGQGAIPLIRTDENFTT REIEQKAAELAYFLRV
Sbjct: 121 LMKDIQSDRTEVKEGVSARRVPYMEIRGQGAIPLIRTDENFTTRREIEQKAAELAYFLRV 180
Query: 538 PIEVF 552
PIEVF
Sbjct: 181 PIEVF 185
>ref|NP_783243.1| yc4 protein [Atropa belladonna]|gi|20068342|emb|CAC88055.1| yc4
protein [Atropa belladonna]
Length = 184
Score = 300 bits (769), Expect = 6e-81
Identities = 145/184 (78%), Positives = 155/184 (83%)
Frame = +1
Query: 1 MSWRSESIWIEFITGSRKTSNFCWAXXXXXXXXXXXXXXXXXYLGRNVISLFPSQQIIFF 180
M+WRSE IWIE ITGSRK SNFCWA YLGRN+IS FP+QQI+FF
Sbjct: 1 MTWRSEHIWIELITGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRNLISFFPTQQIVFF 60
Query: 181 PQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIFLRF 360
PQGIVMSFYGIAGLFIS YLWCTI WNVGSGYD FDRKEGIV IFRWGFPGK+RRIFLRF
Sbjct: 61 PQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRF 120
Query: 361 FMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVP 540
+KDIQS+RIEVKEG+SARRVLYM+IRGQG+IPL RTDEN T REIEQKAAELAYFLRVP
Sbjct: 121 LIKDIQSVRIEVKEGISARRVLYMDIRGQGSIPLTRTDENLTPREIEQKAAELAYFLRVP 180
Query: 541 IEVF 552
IEVF
Sbjct: 181 IEVF 184
>ref|NP_054510.1| photosystem I assembly protein Ycf4 [Nicotiana
tabacum]|gi|140292|sp|P12207|YCF4_TOBAC Photosystem I
assembly protein ycf4|gi|225211|prf||1211235AR ORF
184|gi|82208|pir||A05197 hypothetical protein 184 -
common tobacco chloroplast|gi|11843|emb|CAA77363.1|
hypothetical protein [Nicotiana tabacum]
Length = 184
Score = 299 bits (766), Expect = 1e-80
Identities = 145/184 (78%), Positives = 154/184 (82%)
Frame = +1
Query: 1 MSWRSESIWIEFITGSRKTSNFCWAXXXXXXXXXXXXXXXXXYLGRNVISLFPSQQIIFF 180
M+WRSE IWIE ITGSRK SNFCWA YLGRN+IS FP QQIIFF
Sbjct: 1 MTWRSEHIWIELITGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRNLISFFPPQQIIFF 60
Query: 181 PQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIFLRF 360
PQG+VMSFYGIAGLFIS YLWCTI WNVGSGYD FDRKEGIV IFRWGFPGK+RRIFLRF
Sbjct: 61 PQGLVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRF 120
Query: 361 FMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVP 540
+KDIQS+RIEVKEG+SARRVLYM+IRGQG+IPL RTDEN T REIEQKAAELAYFLRVP
Sbjct: 121 LIKDIQSVRIEVKEGISARRVLYMDIRGQGSIPLTRTDENLTPREIEQKAAELAYFLRVP 180
Query: 541 IEVF 552
IEVF
Sbjct: 181 IEVF 184
>gb|AAG32309.1|AF284694_4 ycf4 [Carpobrotus chilensis]|gi|18202918|sp|Q9GDV1|YCF4_CARCL
Photosystem I assembly protein ycf4
Length = 184
Score = 294 bits (752), Expect = 5e-79
Identities = 142/184 (77%), Positives = 153/184 (82%)
Frame = +1
Query: 1 MSWRSESIWIEFITGSRKTSNFCWAXXXXXXXXXXXXXXXXXYLGRNVISLFPSQQIIFF 180
M+WRS+ IWIE ITGSRK SNFCWA YLGRN+ISLFP QQI+FF
Sbjct: 1 MNWRSKRIWIELITGSRKISNFCWAFILFLGSLGFLLVGISSYLGRNLISLFPPQQILFF 60
Query: 181 PQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIFLRF 360
PQGIVMSFYGIAGLFIS YLWCTI WNVGSGYD FDRKEGIV IFRWGFPGK+RRIFLRF
Sbjct: 61 PQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRF 120
Query: 361 FMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVP 540
+KDIQSIRIE+KEG+ RRVLY+EIRGQGAIPL RTD+N T REIEQKAAELAYFLR+P
Sbjct: 121 LIKDIQSIRIELKEGIYTRRVLYLEIRGQGAIPLTRTDDNLTPREIEQKAAELAYFLRIP 180
Query: 541 IEVF 552
IEVF
Sbjct: 181 IEVF 184
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 116
effective length of database: 275,173,749
effective search space used: 18711814932
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)