BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= accD.f
(1467 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA84394.1| carboxytransferase beta subunit [Arabidopsi... 919 0.0
prf||2210244G Ac-CoA carboxylase:SUBUNIT=beta|gi|1351837|sp... 838 0.0
dbj|BAB33205.1| carboxytransferase beta subunit [Lotus japo... 592 e-168
ref|NP_054508.1| acetyl-CoA carboxylase beta subunit [Nicot... 587 e-166
ref|NP_783241.1| acetyl-CoA carboxylase beta subunit [Atrop... 578 e-164
>dbj|BAA84394.1| carboxytransferase beta subunit [Arabidopsis
thaliana]|gi|7021219|gb|AAF35256.1|AF056971_1
carboxyltransferase beta subunit [Arabidopsis
thaliana]|gi|6685210|sp|P56765|ACCD_ARATH Acetyl-coenzyme
A carboxylase carboxyl transferase subunit beta (ACCASE
beta chain)|gi|7525042|ref|NP_051068.1| acetyl-CoA
carboxylase beta subunit [Arabidopsis thaliana]
Length = 488
Score = 919 bits (2376), Expect = 0.0
Identities = 455/488 (93%), Positives = 455/488 (93%)
Frame = +1
Query: 1 MEKSWFNFMFSKGELEYRGELSKAMDSFAPGEKTTISQDRFIYDMDKNFYGWDERXXXXX 180
MEKSWFNFMFSKGELEYRGELSKAMDSFAPGEKTTISQDRFIYDMDKNFYGWDER
Sbjct: 1 MEKSWFNFMFSKGELEYRGELSKAMDSFAPGEKTTISQDRFIYDMDKNFYGWDERSSYSS 60
Query: 181 XXXXXXXXXXXXKDIRNFISDDTFFVRDSNKNSYSXXXXXXXXXXXXXXXXSDLEKFFYS 360
KDIRNFISDDTFFVRDSNKNSYS SDLEKFFYS
Sbjct: 61 SYSNNVDLLVSSKDIRNFISDDTFFVRDSNKNSYSIFFDKKKKIFEIDNDFSDLEKFFYS 120
Query: 361 YCSSSYLNNRSKGDNDLHYDPYIKDTKYNCTNHINSCIDSYFRSYICIDNNFLIDSNNFN 540
YCSSSYLNNRSKGDNDLHYDPYIKDTKYNCTNHINSCIDSYFRSYICIDNNFLIDSNNFN
Sbjct: 121 YCSSSYLNNRSKGDNDLHYDPYIKDTKYNCTNHINSCIDSYFRSYICIDNNFLIDSNNFN 180
Query: 541 ESYIYNFICSESGKIRESKNYKIRTNRNRSNLISSKDFDITQNYNQLWIQCDNCYGLMYK 720
ESYIYNFICSESGKIRESKNYKIRTNRNRSNLISSKDFDITQNYNQLWIQCDNCYGLMYK
Sbjct: 181 ESYIYNFICSESGKIRESKNYKIRTNRNRSNLISSKDFDITQNYNQLWIQCDNCYGLMYK 240
Query: 721 KVKMNVCEQCGHYLKMSSSERIELSIDPGTWNPMDEDMVSADPIKFHSKEEPYKNRIDSA 900
KVKMNVCEQCGHYLKMSSSERIELSIDPGTWNPMDEDMVSADPIKFHSKEEPYKNRIDSA
Sbjct: 241 KVKMNVCEQCGHYLKMSSSERIELSIDPGTWNPMDEDMVSADPIKFHSKEEPYKNRIDSA 300
Query: 901 QKTTGLTDAVQTGTGQLNGIPVALGVMDFRFMGGSMGSVVGEKITRLIEYATNQCLPLIL 1080
QKTTGLTDAVQTGTGQLNGIPVALGVMDFRFMGGSMGSVVGEKITRLIEYATNQCLPLIL
Sbjct: 301 QKTTGLTDAVQTGTGQLNGIPVALGVMDFRFMGGSMGSVVGEKITRLIEYATNQCLPLIL 360
Query: 1081 VCSSGGARMQEGSLSLMQMAKISSVLCDYQSSKKLFYISILTSPTTGGVTASFGMLGDII 1260
VCSSGGARMQEGSLSLMQMAKISSVLCDYQSSKKLFYISILTSPTTGGVTASFGMLGDII
Sbjct: 361 VCSSGGARMQEGSLSLMQMAKISSVLCDYQSSKKLFYISILTSPTTGGVTASFGMLGDII 420
Query: 1261 IAEPYAYIAFAGKRVIEQTLKKAVPEGSQAAESLLRKGLLDAIVPRNLLKGVLSELFQLH 1440
IAEPYAYIAFAGKRVIEQTLKKAVPEGSQAAESLLRKGLLDAIVPRNLLKGVLSELFQLH
Sbjct: 421 IAEPYAYIAFAGKRVIEQTLKKAVPEGSQAAESLLRKGLLDAIVPRNLLKGVLSELFQLH 480
Query: 1441 AFFPLNTN 1464
AFFPLNTN
Sbjct: 481 AFFPLNTN 488
>prf||2210244G Ac-CoA carboxylase:SUBUNIT=beta|gi|1351837|sp|P48937|ACCD_BRANA
Acetyl-coenzyme A carboxylase carboxyl transferase
subunit beta (ACCASE beta chain)|gi|2144155|pir||S66564
acetyl CoA carboxylase type II beta-carboxyltransferase
chain - rape chloroplast|gi|1069998|emb|CAA90747.1|
acetyl CoA carboxylase carboxyltransferase (beta subunit)
[Brassica napus]
Length = 489
Score = 838 bits (2165), Expect = 0.0
Identities = 421/490 (85%), Positives = 438/490 (88%), Gaps = 2/490 (0%)
Frame = +1
Query: 1 MEKSWFNFMFSKGELEYRGELSKAMDSFAPGEKTTISQDRFIYDMDKNFYGWDERXXXXX 180
MEKSWFN MFSKGELEYRGELSKAMDSFAP EKTTIS+DRFIYDMDKNFYGW ER
Sbjct: 1 MEKSWFNLMFSKGELEYRGELSKAMDSFAPIEKTTISKDRFIYDMDKNFYGWGERSSYYN 60
Query: 181 XXXXXXXXXXXXKDIRNFISDDTFFVRDSNKNSYSXXXXXXXXXXXXXXXXSDLEKFFYS 360
KDIRNFISDDTFFVRDSNKNSYS SDLE FFYS
Sbjct: 61 NVDLLVNS----KDIRNFISDDTFFVRDSNKNSYSIYFDIEKKKFEINNDLSDLEIFFYS 116
Query: 361 YCSSSYLNNRSKGDNDLHYDPYIKDTKYNCTNHINSCIDSYFRSYICIDNNFLIDSNNFN 540
YCSSSYLNNRSKGDNDLHYDPYIKDTKYNC NHINSCIDSYFRS+ICI+++FL DSNN N
Sbjct: 117 YCSSSYLNNRSKGDNDLHYDPYIKDTKYNCNNHINSCIDSYFRSHICINSHFLSDSNNSN 176
Query: 541 ESYIYNFICSESG--KIRESKNYKIRTNRNRSNLISSKDFDITQNYNQLWIQCDNCYGLM 714
ESYIYNFICSESG KIRESKN KIRTN NR+NL+SSKDFDIT+NYNQLWIQCDNCYGL
Sbjct: 177 ESYIYNFICSESGSGKIRESKNDKIRTNSNRNNLMSSKDFDITKNYNQLWIQCDNCYGLK 236
Query: 715 YKKVKMNVCEQCGHYLKMSSSERIELSIDPGTWNPMDEDMVSADPIKFHSKEEPYKNRID 894
YKKV+MNVCE+CGHYLKM+SSERIELSIDPG+WN MDEDMVSADPIKFHS+EEPYK RI
Sbjct: 237 YKKVEMNVCEECGHYLKMTSSERIELSIDPGSWNGMDEDMVSADPIKFHSREEPYKKRIA 296
Query: 895 SAQKTTGLTDAVQTGTGQLNGIPVALGVMDFRFMGGSMGSVVGEKITRLIEYATNQCLPL 1074
SAQK TGLTDA+QTGTGQLNGIPVALGVMDF+FMGGSMGSVVG+KITRLIEYATNQCLPL
Sbjct: 297 SAQKKTGLTDAIQTGTGQLNGIPVALGVMDFQFMGGSMGSVVGDKITRLIEYATNQCLPL 356
Query: 1075 ILVCSSGGARMQEGSLSLMQMAKISSVLCDYQSSKKLFYISILTSPTTGGVTASFGMLGD 1254
ILVCSSGGARMQEGSLSLMQMAKISSVLCDYQSSKKLFYISILTSPTTGGVTAS GMLGD
Sbjct: 357 ILVCSSGGARMQEGSLSLMQMAKISSVLCDYQSSKKLFYISILTSPTTGGVTASLGMLGD 416
Query: 1255 IIIAEPYAYIAFAGKRVIEQTLKKAVPEGSQAAESLLRKGLLDAIVPRNLLKGVLSELFQ 1434
IIIAEPYAYIAFAGKRVIEQTLKKAVPEGSQAAESLLRKGLLDAIVPRN LKGV+SELFQ
Sbjct: 417 IIIAEPYAYIAFAGKRVIEQTLKKAVPEGSQAAESLLRKGLLDAIVPRNPLKGVVSELFQ 476
Query: 1435 LHAFFPLNTN 1464
LHAFFPLN N
Sbjct: 477 LHAFFPLNKN 486
>dbj|BAB33205.1| carboxytransferase beta subunit [Lotus
japonicus]|gi|23813632|sp|Q9BBS1|ACCD_LOTJA
Acetyl-coenzyme A carboxylase carboxyl transferase
subunit beta (ACCASE beta
chain)|gi|13518447|ref|NP_084807.1| carboxytransferase
beta subunit [Lotus japonicus]
Length = 501
Score = 592 bits (1525), Expect = e-168
Identities = 314/502 (62%), Positives = 366/502 (72%), Gaps = 14/502 (2%)
Frame = +1
Query: 1 MEKSWFNFMFSKGELEYRGELSKAMDSFAPGEKTTISQDR-FIYDMDKNFYGWDERXXXX 177
MEK W N M EL Y+ LSK+ D F P E T++S+D + DMDKN + W++
Sbjct: 1 MEKWWLNSMLRNRELAYKCGLSKSTDRFGPIENTSVSEDPPILTDMDKNIHSWND---IE 57
Query: 178 XXXXXXXXXXXXXKDIRNFISDDTFFVRDSNKNSYSXXXXXXXXXXXXXXXX---SDLEK 348
++IRNF+S+ +F VRDS +NSYS S+LE
Sbjct: 58 NCSYNNVDYLVGVENIRNFLSNKSFLVRDSKRNSYSIYFAIENQILEIDNDHLFLSELES 117
Query: 349 FFYSYCSSSYLNNRSKGDNDLHYDPYIKDTKYNCTNHINSCIDSYFRSYICIDNNFLIDS 528
FF Y +S YLNN SKGD D Y+ DT+ + N+INS I++Y RS ICIDN L D
Sbjct: 118 FFSRYTNSIYLNNSSKGDGD----HYMYDTESSWNNNINSFIENYIRSQICIDNYILGDG 173
Query: 529 NNFNESYIYNFICSE-SGKIRESKNYKIRTNRNRSN------LISSKDFDITQNYNQLWI 687
+ +N+SY Y++ICS K E + I T+ N N + S D D TQ Y LWI
Sbjct: 174 DKYNDSYFYSYICSTIRKKSSERERTSIITSTNNLNDSDFTKIEGSNDLDETQKYKHLWI 233
Query: 688 QCDNCYGLMYKKV---KMNVCEQCGHYLKMSSSERIELSIDPGTWNPMDEDMVSADPIKF 858
+C+NCYGL YKK+ KMN+CE CG++LKMSSS+RIELSIDPGTWNPMDEDM+S DPI+F
Sbjct: 234 ECENCYGLNYKKILKSKMNICEHCGYHLKMSSSDRIELSIDPGTWNPMDEDMISVDPIEF 293
Query: 859 HSKEEPYKNRIDSAQKTTGLTDAVQTGTGQLNGIPVALGVMDFRFMGGSMGSVVGEKITR 1038
HS+EEPYK+RIDS QKTTGLT+AVQTGTG LNGIPVA+G+MDF FMGGSMGSVVGEKITR
Sbjct: 294 HSEEEPYKDRIDSYQKTTGLTEAVQTGTGHLNGIPVAIGIMDFEFMGGSMGSVVGEKITR 353
Query: 1039 LIEYATNQCLPLILVCSSGGARMQEGSLSLMQMAKISSVLCDYQSSKKLFYISILTSPTT 1218
L+EYATNQ LPLI+VC+SGGARMQEGSLSLMQMAKISS L DYQ +KKLFY+SILTSPTT
Sbjct: 354 LVEYATNQLLPLIVVCASGGARMQEGSLSLMQMAKISSALYDYQLNKKLFYVSILTSPTT 413
Query: 1219 GGVTASFGMLGDIIIAEPYAYIAFAGKRVIEQTLKKAVPEGSQAAESLLRKGLLDAIVPR 1398
GGVTASFGMLGDIIIAEP AYIAFAGKRVIEQTL KAVPEGSQAAE L KGL D+IVPR
Sbjct: 414 GGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKAVPEGSQAAEYLFHKGLFDSIVPR 473
Query: 1399 NLLKGVLSELFQLHAFFPLNTN 1464
N LKG+LSELFQLHAFFPL N
Sbjct: 474 NPLKGILSELFQLHAFFPLIQN 495
>ref|NP_054508.1| acetyl-CoA carboxylase beta subunit [Nicotiana
tabacum]|gi|11842|emb|CAA77362.1| acetyl-CoA carboxylase
beta subunit [Nicotiana
tabacum]|gi|141631|sp|P12219|ACCD_TOBAC Acetyl-coenzyme A
carboxylase carboxyl transferase subunit beta (ACCASE
beta chain)|gi|82218|pir||A05196 hypothetical protein 512
- common tobacco chloroplast|gi|225210|prf||1211235AQ ORF
512
Length = 512
Score = 587 bits (1513), Expect = e-166
Identities = 313/496 (63%), Positives = 361/496 (72%), Gaps = 10/496 (2%)
Frame = +1
Query: 1 MEKSWFNFMFSKGELEYRGELSKAMDSFAPGEKTTISQDRFIYDMDKNFYGWDERXXXXX 180
ME+ WFN M K E E R L+K+M S P E T +R + KN + W R
Sbjct: 18 MERWWFNSMLFKKEFERRCGLNKSMGSLGPIENTNEDPNRKV----KNIHSWRNRDNSSC 73
Query: 181 XXXXXXXXXXXXKDIRNFISDDTFFVRDSNKNSYSXXXXXXXXXXXXX---XXXSDLEKF 351
KDIRNFISDDTF V D N +SYS S+LE
Sbjct: 74 SNVDYLFGV---KDIRNFISDDTFLVSDRNGDSYSIYFDIENHIFEIDNDHSFLSELESS 130
Query: 352 FYSYCSSSYLNNRSKGDNDLHYDPYIKDTKYNCTNHINSCIDSYFRSYICIDNNFLIDSN 531
FYSY +S+Y NN +G+ D +Y+ Y+ DT+Y+ NHINSCIDSY +S ICID + + S
Sbjct: 131 FYSYRNSNYRNNGFRGE-DPYYNSYMYDTQYSWNNHINSCIDSYLQSQICIDTSIISGSE 189
Query: 532 NFNESYIYNFICS-ESGKIRESKNYKIRTNRNRSNLI---SSKDFDITQNYNQLWIQCDN 699
N+ +SYIY +C ES E++ RT S+L SS D ++TQ Y LW+QC+N
Sbjct: 190 NYGDSYIYRAVCGGESRNSSENEGSSRRTRTKGSDLTIRESSNDLEVTQKYRHLWVQCEN 249
Query: 700 CYGLMYKKV---KMNVCEQCGHYLKMSSSERIELSIDPGTWNPMDEDMVSADPIKFHSKE 870
CYGL YKK KMN+CEQCG++LKMSSS+RIEL IDPGTW+PMDEDMVS DPI+FHS+E
Sbjct: 250 CYGLNYKKFLKSKMNICEQCGYHLKMSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEE 309
Query: 871 EPYKNRIDSAQKTTGLTDAVQTGTGQLNGIPVALGVMDFRFMGGSMGSVVGEKITRLIEY 1050
EPYK+RIDS Q+ TGLT+AVQTG GQLNGIPVA+GVMDF+FMGGSMGSVVGEKITRLIEY
Sbjct: 310 EPYKDRIDSYQRKTGLTEAVQTGIGQLNGIPVAIGVMDFQFMGGSMGSVVGEKITRLIEY 369
Query: 1051 ATNQCLPLILVCSSGGARMQEGSLSLMQMAKISSVLCDYQSSKKLFYISILTSPTTGGVT 1230
A NQ LPLI+VC+SGGARMQEGSLSLMQMAKISS L DYQ +KKLFY+SILTSPTTGGVT
Sbjct: 370 AANQILPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQLNKKLFYVSILTSPTTGGVT 429
Query: 1231 ASFGMLGDIIIAEPYAYIAFAGKRVIEQTLKKAVPEGSQAAESLLRKGLLDAIVPRNLLK 1410
ASFGMLGDIIIAEP AYIAFAGKRVIEQTL K VPEGSQAAE L +KGL D IVPRNLLK
Sbjct: 430 ASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVPEGSQAAEYLFQKGLFDLIVPRNLLK 489
Query: 1411 GVLSELFQLHAFFPLN 1458
VLSELF+LHAFFPLN
Sbjct: 490 SVLSELFKLHAFFPLN 505
>ref|NP_783241.1| acetyl-CoA carboxylase beta subunit [Atropa
belladonna]|gi|20068340|emb|CAC88053.1| acetyl-CoA
carboxylase beta subunit [Atropa belladonna]
Length = 504
Score = 578 bits (1489), Expect = e-164
Identities = 311/496 (62%), Positives = 360/496 (71%), Gaps = 10/496 (2%)
Frame = +1
Query: 1 MEKSWFNFMFSKGELEYRGELSKAMDSFAPGEKTTISQDRFIYDMDKNFYGWDERXXXXX 180
ME+ WFN M K E E R L+K+M S P E T+ +R + KN +
Sbjct: 18 MERWWFNSMLFKKEFERRCGLNKSMGSLGPIENTSEDPNRKV----KNIHSCSN------ 67
Query: 181 XXXXXXXXXXXXKDIRNFISDDTFFVRDSNKNSYSXXXXXXXXXXXXX---XXXSDLEKF 351
KDIRNFISDDTF V D N +SYS S+LE
Sbjct: 68 -----VDYLFGVKDIRNFISDDTFLVSDRNGDSYSIYFDIENQIFEIDNDHSFLSELESS 122
Query: 352 FYSYCSSSYLNNRSKGDNDLHYDPYIKDTKYNCTNHINSCIDSYFRSYICIDNNFLIDSN 531
FYSY +SSYLNN +G+ D +Y+ Y+ DT+Y+ NHINSCID+Y +S ICID + + S
Sbjct: 123 FYSYRNSSYLNNGFRGE-DPYYNSYMYDTQYSWNNHINSCIDNYLQSQICIDTSIISGSE 181
Query: 532 NFNESYIYNFICS-ESGKIRESKNYKIRTNRNRSNLI---SSKDFDITQNYNQLWIQCDN 699
N+ +SYIY IC ES E++ RT S+L SS D ++TQ Y LW+QC+N
Sbjct: 182 NYGDSYIYRTICGGESRNSSENEGSSKRTRTKGSDLTIRESSNDLEVTQKYRHLWVQCEN 241
Query: 700 CYGLMYKKV---KMNVCEQCGHYLKMSSSERIELSIDPGTWNPMDEDMVSADPIKFHSKE 870
CYGL YKK KMN+CEQCG++LKMSSS+RIEL ID GTW+PMDEDMVS DPI+FHS+E
Sbjct: 242 CYGLNYKKFLKSKMNICEQCGYHLKMSSSDRIELLIDAGTWDPMDEDMVSLDPIEFHSEE 301
Query: 871 EPYKNRIDSAQKTTGLTDAVQTGTGQLNGIPVALGVMDFRFMGGSMGSVVGEKITRLIEY 1050
EPYK+RIDS Q+ TGLT+AVQTG GQLNGIPVA+GVMDF+FMGGSMGSVVGEKITRLIE+
Sbjct: 302 EPYKDRIDSYQRKTGLTEAVQTGIGQLNGIPVAIGVMDFQFMGGSMGSVVGEKITRLIEH 361
Query: 1051 ATNQCLPLILVCSSGGARMQEGSLSLMQMAKISSVLCDYQSSKKLFYISILTSPTTGGVT 1230
A NQ LPLI+VC+SGGARMQEGSLSLMQMAKISS L DYQ +KKLFY+SILTSPTTGGVT
Sbjct: 362 AANQILPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQLNKKLFYVSILTSPTTGGVT 421
Query: 1231 ASFGMLGDIIIAEPYAYIAFAGKRVIEQTLKKAVPEGSQAAESLLRKGLLDAIVPRNLLK 1410
ASFGMLGDIIIAEP AYIAFAGKRVIEQTL K VPEGSQAAE L +KGL D IVPRNLLK
Sbjct: 422 ASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVPEGSQAAEYLFQKGLFDQIVPRNLLK 481
Query: 1411 GVLSELFQLHAFFPLN 1458
VLSELF+LHAFFPLN
Sbjct: 482 SVLSELFKLHAFFPLN 497
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 127
effective length of database: 260,348,906
effective search space used: 93985955066
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)