BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rps4.f
(1089 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM15172.1| hypothetical protein [Arabidopsis thaliana]|... 607 e-172
gb|AAC26507.1| ribosomal protein S4 [Brassica napus] 598 e-170
sp|Q31708|RT04_ARATH Mitochondrial ribosomal protein S4|gi|... 566 e-160
gb|AAM18533.1|AF375592_1 ribosomal protein S4 [Magnolia x s... 468 e-131
pir||T02875 ribosomal protein S4 - rice mitochondrion|gi|23... 405 e-112
>gb|AAM15172.1| hypothetical protein [Arabidopsis
thaliana]|gi|6851017|emb|CAA69772.3| ribosomal protein S4
[Arabidopsis thaliana]|gi|1460051|emb|CAA65380.1| small
ribosomal protein 4 [Arabidopsis
thaliana]|gi|13449315|ref|NP_085497.1| ribosomal protein
S4 [Arabidopsis thaliana]|gi|15226130|ref|NP_178806.1|
hypothetical protein; protein id: At2g07734.1
[Arabidopsis thaliana]
Length = 362
Score = 607 bits (1564), Expect = e-172
Identities = 306/362 (84%), Positives = 306/362 (84%)
Frame = +1
Query: 1 MWLLKKLIQRDIDLSPLRFQTCRLLSGNVRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
MWLLKKLIQRDIDLSPLRFQTCRLLSGNVRN
Sbjct: 1 MWLLKKLIQRDIDLSPLRFQTCRLLSGNVRNRELTIIQRRILRRLRNRKRSIKKRKIYPK 60
Query: 181 XYLTSYIQLQTTRKLPLFHGDLPITEMHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETI 360
YLTSYIQLQTTRKLPLFHGDLPITEMHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETI
Sbjct: 61 KYLTSYIQLQTTRKLPLFHGDLPITEMHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETI 120
Query: 361 PQARQPISHRRVCVNKGMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEISVEKII 540
PQARQPISHRRVCVNKGMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEISVEKII
Sbjct: 121 PQARQPISHRRVCVNKGMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEISVEKII 180
Query: 541 GKLLHQPLRMWRRSKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKV 720
GKLLHQPLRMWRRSKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKV
Sbjct: 181 GKLLHQPLRMWRRSKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKV 240
Query: 721 CLGSSFAEHKRMXXXXXXXXXXXXXXXDKNLNLPTRTISPIVXXXXXXXXXXXTYCFASP 900
CLGSSFAEHKRM DKNLNLPTRTISPIV TYCFASP
Sbjct: 241 CLGSSFAEHKRMKRNLLKSLFLSKRRKDKNLNLPTRTISPIVYNSSLSLYSNSTYCFASP 300
Query: 901 HKLTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSRNGRGQ 1080
HKLTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSRNGRGQ
Sbjct: 301 HKLTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSRNGRGQ 360
Query: 1081 NI 1086
NI
Sbjct: 361 NI 362
>gb|AAC26507.1| ribosomal protein S4 [Brassica napus]
Length = 362
Score = 598 bits (1542), Expect = e-170
Identities = 302/362 (83%), Positives = 304/362 (83%)
Frame = +1
Query: 1 MWLLKKLIQRDIDLSPLRFQTCRLLSGNVRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
MWLLKKLIQRDID+SPLRFQTCRLLSGNVRN
Sbjct: 1 MWLLKKLIQRDIDMSPLRFQTCRLLSGNVRNRELTIIQRRILRRLRNRKRSIKKRKIYPK 60
Query: 181 XYLTSYIQLQTTRKLPLFHGDLPITEMHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETI 360
YLTSYIQLQTTRKLPLFHGDLPITEMHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETI
Sbjct: 61 KYLTSYIQLQTTRKLPLFHGDLPITEMHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETI 120
Query: 361 PQARQPISHRRVCVNKGMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEISVEKII 540
PQARQPISHRRVCVNKGMVSITH KLSHGDIISFQENNAIIRGEEIRRSFYKEISVEKII
Sbjct: 121 PQARQPISHRRVCVNKGMVSITHLKLSHGDIISFQENNAIIRGEEIRRSFYKEISVEKII 180
Query: 541 GKLLHQPLRMWRRSKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKV 720
GKLLHQPLRMWRRSKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKV
Sbjct: 181 GKLLHQPLRMWRRSKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKV 240
Query: 721 CLGSSFAEHKRMXXXXXXXXXXXXXXXDKNLNLPTRTISPIVXXXXXXXXXXXTYCFASP 900
CLGSSFAEHKRM +KNLNLPTRTISPIV TY FASP
Sbjct: 241 CLGSSFAEHKRMKRNLLKSLFLSKRRKEKNLNLPTRTISPIVYNSSLSLYSNSTYSFASP 300
Query: 901 HKLTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSRNGRGQ 1080
HKLTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSRNGRGQ
Sbjct: 301 HKLTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSRNGRGQ 360
Query: 1081 NI 1086
NI
Sbjct: 361 NI 362
>sp|Q31708|RT04_ARATH Mitochondrial ribosomal protein S4|gi|2119063|pir||S71904 ribosomal
protein S4 - Arabidopsis thaliana mitochondrion
Length = 362
Score = 566 bits (1458), Expect = e-160
Identities = 292/362 (80%), Positives = 295/362 (80%)
Frame = +1
Query: 1 MWLLKKLIQRDIDLSPLRFQTCRLLSGNVRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
MWLLKKLIQRDIDLSPLRFQTCRLLSGNV N
Sbjct: 1 MWLLKKLIQRDIDLSPLRFQTCRLLSGNVWNRELTIIQRRILRRLRNRKRSIKKRKIYPK 60
Query: 181 XYLTSYIQLQTTRKLPLFHGDLPITEMHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETI 360
YLTSYIQLQTTRKLP F+GDLPITEMHRGTKRTSYIPF LN ETRFDVIPLRL+FLETI
Sbjct: 61 KYLTSYIQLQTTRKLPFFYGDLPITEMHRGTKRTSYIPFLLNLETRFDVIPLRLYFLETI 120
Query: 361 PQARQPISHRRVCVNKGMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEISVEKII 540
PQARQ ISHRRVCVNKGMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEI VEKII
Sbjct: 121 PQARQLISHRRVCVNKGMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEILVEKII 180
Query: 541 GKLLHQPLRMWRRSKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKV 720
GKLLHQPLRMWRRSKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKV
Sbjct: 181 GKLLHQPLRMWRRSKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKV 240
Query: 721 CLGSSFAEHKRMXXXXXXXXXXXXXXXDKNLNLPTRTISPIVXXXXXXXXXXXTYCFASP 900
CLGSSFAEHKRM DKNLNLPTRTISPIV TYCFASP
Sbjct: 241 CLGSSFAEHKRMKRNLLKSLFLSKRRKDKNLNLPTRTISPIVYNSSLSLYSNSTYCFASP 300
Query: 901 HKLTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSRNGRGQ 1080
HKLTMKRRIKRIELPTHY EVN+RTPKAVV YGPNIGHIPHDIRLKD NL L SRNGRGQ
Sbjct: 301 HKLTMKRRIKRIELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLKDLNLLLWSRNGRGQ 360
Query: 1081 NI 1086
NI
Sbjct: 361 NI 362
>gb|AAM18533.1|AF375592_1 ribosomal protein S4 [Magnolia x soulangeana]
Length = 352
Score = 468 bits (1203), Expect = e-131
Identities = 250/354 (70%), Positives = 264/354 (73%), Gaps = 8/354 (2%)
Frame = +1
Query: 49 LRFQTCRLLSGNVRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLTSYIQLQTTRKLP 228
LRF+TCR L GNVRN L SYI+ QTTRKLP
Sbjct: 4 LRFKTCRPLPGNVRNRELTIIQRRILRRLRNKKRSKKRKIYPREN-LNSYIKSQTTRKLP 62
Query: 229 LFHGDLPITEMHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETIPQARQPISHRRVCVNK 408
LFHGDLPITEMHRGT+RTSYIPFPLNPETR DVIP+RLHF ETIPQARQPISHRRVCVN
Sbjct: 63 LFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFRETIPQARQPISHRRVCVNN 122
Query: 409 GMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEISVEKIIGKLLHQPLRMWRRSKT 588
GMVSITH K+SHGD+ISFQEN+A GEEIRRSFY +ISVEKIIGK L P+RMWRR+KT
Sbjct: 123 GMVSITHLKVSHGDLISFQENDARTCGEEIRRSFYIDISVEKIIGKFL--PVRMWRRTKT 180
Query: 589 EWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRM--XX 762
EWF LLKT+RGCRLLLKSRFLQQLRSSMQEEDLERTKKFGS KVCLGSSFAEH RM
Sbjct: 181 EWFRLLKTQRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSAKVCLGSSFAEHNRMKRNL 240
Query: 763 XXXXXXXXXXXXXDKNLNLPTRTISPIVXXXXXXXXXXXTYCFASPHKLT------MKRR 924
+KN NLPTRT SP+V TYC SPH+ T KRR
Sbjct: 241 YHFKFIFLSKRRNEKNRNLPTRTRSPLV--KNSYIYSNSTYCSGSPHQFTRKRRIKRKRR 298
Query: 925 IKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSRNGRGQNI 1086
IKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRS NGRGQNI
Sbjct: 299 IKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 352
>pir||T02875 ribosomal protein S4 - rice mitochondrion|gi|23495402|dbj|BAC19883.1|
Ribosomal protein S4 [Oryza sativa (japonica
cultivar-group)]|gi|3025870|gb|AAC26506.1| ribosomal
protein S4 [Oryza sativa]
Length = 352
Score = 405 bits (1042), Expect = e-112
Identities = 225/356 (63%), Positives = 246/356 (68%), Gaps = 10/356 (2%)
Frame = +1
Query: 49 LRFQTCRLLSGNVRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLTSYIQLQTTRKLP 228
LRF+TCRLL GNVRN L S I+ QTTRKL
Sbjct: 4 LRFKTCRLLPGNVRNRELSLIQRRILRRLRNKRRSIKRNLSQREN-LNSNIKSQTTRKLS 62
Query: 229 LFHGDLPITEMHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETIPQARQPISHRRVCVNK 408
L++GDLPI EMHRG +RTSYIPF LN ETR DVIP+RLHF +T+PQARQPISHRRVC+N
Sbjct: 63 LYYGDLPIREMHRGRERTSYIPFLLNQETRSDVIPVRLHFCDTLPQARQPISHRRVCLNN 122
Query: 409 GMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEISVEKIIGKLLHQPLRMWRRSKT 588
G+V+ITH K+SHGD+ISFQEN+A RGEEIRRSFY +ISV KIIGKLL P+R+WR++KT
Sbjct: 123 GLVTITHLKVSHGDLISFQENDARTRGEEIRRSFYIDISVGKIIGKLL--PVRIWRKTKT 180
Query: 589 EWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMXXXX 768
EWF LL T+R CRLLLKS FLQ+LRS MQEEDLERTKKFGS KVCLGSSFAEH RM
Sbjct: 181 EWFRLLTTQRVCRLLLKSWFLQELRSYMQEEDLERTKKFGSAKVCLGSSFAEHNRMKRNL 240
Query: 769 XXXXXXXXXXXDKNLNLPTRT----------ISPIVXXXXXXXXXXXTYCFASPHKLTMK 918
K RT ISP V TYC SP T K
Sbjct: 241 FHFKYFFLLKRRKEEEELIRTIGEAENRKRAISPFV--YKSSLYRNSTYCSGSP--FTRK 296
Query: 919 RRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSRNGRGQNI 1086
RIKRIELPTHYSEVNHRT KAVVSYGPNIGHIPHDIRLKDPNLPLRS NGRGQNI
Sbjct: 297 IRIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 352
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 124
effective length of database: 264,392,045
effective search space used: 62925306710
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)