BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ycf3.f
         (381 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA84386.1|  ycf3 [Arabidopsis thaliana]|gi|7525034|ref|...   264   2e-70
emb|CAB44315.1|  YCF3 protein [Sinapis alba]|gi|19861013|sp|...   264   2e-70
emb|CAA77415.1|  Ycf3 protein [Nicotiana tabacum]|gi|140285|...   254   2e-67
ref|NP_783233.1|  ycf3 protein [Atropa belladonna]|gi|200683...   254   2e-67
emb|CAB67135.1|  Ycf3 protein [Oenothera elata subsp. hooker...   254   2e-67

>dbj|BAA84386.1| ycf3 [Arabidopsis thaliana]|gi|7525034|ref|NP_051060.1| photosystem
           I assembly protein ycf3 [Arabidopsis thaliana]
          Length = 126

 Score =  264 bits (674), Expect = 2e-70
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +1

Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 180
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN
Sbjct: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 60

Query: 181 PFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNWLT 360
           PFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNWLT
Sbjct: 61  PFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNWLT 120

Query: 361 ITRRFE 378
           ITRRFE
Sbjct: 121 ITRRFE 126



>emb|CAB44315.1| YCF3 protein [Sinapis alba]|gi|19861013|sp|P56787|YCF3_ARATH
           Photosystem I assembly protein ycf3
          Length = 168

 Score =  264 bits (674), Expect = 2e-70
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +1

Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 180
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN
Sbjct: 43  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 102

Query: 181 PFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNWLT 360
           PFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNWLT
Sbjct: 103 PFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNWLT 162

Query: 361 ITRRFE 378
           ITRRFE
Sbjct: 163 ITRRFE 168



>emb|CAA77415.1| Ycf3 protein [Nicotiana tabacum]|gi|140285|sp|P12204|YCF3_TOBAC
           Photosystem I assembly protein
           ycf3|gi|11465956|ref|NP_054498.1| photosystem I assembly
           protein Ycf3 [Nicotiana tabacum]
          Length = 168

 Score =  254 bits (648), Expect = 2e-67
 Identities = 121/126 (96%), Positives = 122/126 (96%)
 Frame = +1

Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 180
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN
Sbjct: 43  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 102

Query: 181 PFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNWLT 360
           PFLPQAFNNMAVICHYRGEQAIQQGDSE+AEAWF QAAEYWKQAI LTPGNYIEA NWL 
Sbjct: 103 PFLPQAFNNMAVICHYRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLK 162

Query: 361 ITRRFE 378
           ITRRFE
Sbjct: 163 ITRRFE 168



>ref|NP_783233.1| ycf3 protein [Atropa belladonna]|gi|20068332|emb|CAC88045.1| ycf3
           protein [Atropa belladonna]
          Length = 168

 Score =  254 bits (648), Expect = 2e-67
 Identities = 121/126 (96%), Positives = 122/126 (96%)
 Frame = +1

Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 180
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN
Sbjct: 43  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 102

Query: 181 PFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNWLT 360
           PFLPQAFNNMAVICHYRGEQAIQQGDSE+AEAWF QAAEYWKQAI LTPGNYIEA NWL 
Sbjct: 103 PFLPQAFNNMAVICHYRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLK 162

Query: 361 ITRRFE 378
           ITRRFE
Sbjct: 163 ITRRFE 168



>emb|CAB67135.1| Ycf3 protein [Oenothera elata subsp.
           hookeri]|gi|13518311|ref|NP_084670.1| photosystem I
           assembly protein Ycf3 [Oenothera elata subsp. hookeri]
          Length = 158

 Score =  254 bits (648), Expect = 2e-67
 Identities = 120/126 (95%), Positives = 123/126 (97%)
 Frame = +1

Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 180
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSY+LYNIGLIHTSNGEHTKALEYYFRALERN
Sbjct: 33  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYVLYNIGLIHTSNGEHTKALEYYFRALERN 92

Query: 181 PFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNWLT 360
           PFLPQAFNNMAVICHYRGEQAI+QGDSE+AEAWF QAAEYWKQAI LTPGNYIEAQNWL 
Sbjct: 93  PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLK 152

Query: 361 ITRRFE 378
           ITRRFE
Sbjct: 153 ITRRFE 158



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 102
effective length of database: 294,041,731
effective search space used: 7057001544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)