BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ycf9.f
         (189 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB67141.1|  hypothetical protein [Oenothera elata subsp...   112   1e-24
pir||T08999  hypothetical protein - spinach chloroplast           110   5e-24
gb|AAB59337.1|  unknown [Pisum sativum]|gi|3123098|sp|Q32902...   100   7e-21
dbj|BAA84382.1|  ycf9 [Arabidopsis thaliana]|gi|6686169|sp|P...   100   7e-21
ref|NP_054494.1|  Ycf9 protein [Nicotiana tabacum]|gi|140318...    99   1e-20

>emb|CAB67141.1| hypothetical protein [Oenothera elata subsp.
           hookeri]|gi|13518317|ref|NP_084676.1| hypothetical
           protein [Oenothera elata subsp.
           hookeri]|gi|22257620|sp|Q9MTN4|YCX4_OENHO Hypothetical
           8.4 kDa protein in ycf9-trnS intergenic region (ORF75)
          Length = 75

 Score =  112 bits (281), Expect = 1e-24
 Identities = 54/60 (90%), Positives = 57/60 (95%)
 Frame = -2

Query: 182 IRELRIPTKKTNPIHKDVPENTTFLLLDQPSGDANTTGTLISKIDEVIINAKTANWKAIV 3
           +RELRIPT+KTNPIH DVPENTTFLLLDQPSG+ANTTGTLISK DEV INAKTANWKAIV
Sbjct: 1   MRELRIPTRKTNPIHNDVPENTTFLLLDQPSGEANTTGTLISKSDEVAINAKTANWKAIV 60



>pir||T08999 hypothetical protein - spinach chloroplast
          Length = 90

 Score =  110 bits (275), Expect = 5e-24
 Identities = 53/60 (88%), Positives = 56/60 (93%)
 Frame = -2

Query: 182 IRELRIPTKKTNPIHKDVPENTTFLLLDQPSGDANTTGTLISKIDEVIINAKTANWKAIV 3
           +RELRIPT+KTNP H DVPENT FLLLDQPSG+ANTTGTLISKIDEV INAKTANWKAIV
Sbjct: 1   MRELRIPTRKTNPSHNDVPENTIFLLLDQPSGEANTTGTLISKIDEVAINAKTANWKAIV 60



>gb|AAB59337.1| unknown [Pisum sativum]|gi|3123098|sp|Q32902|YCF9_PEA Hypothetical
           6.6 kDa protein ycf9 (ORF 62)
          Length = 62

 Score =  100 bits (248), Expect = 7e-21
 Identities = 51/62 (82%), Positives = 51/62 (82%)
 Frame = +1

Query: 1   MTIAFQLAVFAXXXXXXXXXXXVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 180
           MTIAFQLAVFA           VPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL
Sbjct: 1   MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 181 IS 186
           IS
Sbjct: 61  IS 62



>dbj|BAA84382.1| ycf9 [Arabidopsis thaliana]|gi|6686169|sp|P56790|YCF9_ARATH
           Hypothetical 6.6 kDa protein
           ycf9|gi|7525030|ref|NP_051056.1| ycf9 [Arabidopsis
           thaliana]
          Length = 62

 Score =  100 bits (248), Expect = 7e-21
 Identities = 51/62 (82%), Positives = 51/62 (82%)
 Frame = +1

Query: 1   MTIAFQLAVFAXXXXXXXXXXXVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 180
           MTIAFQLAVFA           VPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL
Sbjct: 1   MTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 181 IS 186
           IS
Sbjct: 61  IS 62



>ref|NP_054494.1| Ycf9 protein [Nicotiana tabacum]|gi|140318|sp|P09974|YCF9_TOBAC
           Hypothetical 6.5 kDa protein ycf9 (ORF
           62)|gi|82221|pir||A05189 probable membrane protein -
           common tobacco chloroplast|gi|28261714|ref|NP_783229.1|
           ycf9 protein [Atropa
           belladonna]|gi|15593987|emb|CAC69843.1| Ycf9 protein
           [Chloroplast transformation vector
           pRB95]|gi|15593983|emb|CAC69840.1| Ycf9 protein
           [Chloroplast transformation vector
           pRB94]|gi|15593979|emb|CAC69837.1| Ycf9 protein
           [Chloroplast transformation vector
           pRB70]|gi|11827|emb|CAA77349.1| Ycf9 protein [Nicotiana
           tabacum]|gi|225287|prf||1211235Y membrane
           protein|gi|20068328|emb|CAC88041.1| ycf9 protein [Atropa
           belladonna]
          Length = 62

 Score = 99.4 bits (246), Expect = 1e-20
 Identities = 50/62 (80%), Positives = 51/62 (81%)
 Frame = +1

Query: 1   MTIAFQLAVFAXXXXXXXXXXXVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 180
           MT+AFQLAVFA           VPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL
Sbjct: 1   MTLAFQLAVFALIATSLILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 181 IS 186
           IS
Sbjct: 61  IS 62



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 38
effective length of database: 380,295,363
effective search space used: 9127088712
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)