BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ycf6.f
(90 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_054489.1| cytochrome b6/f complex subunit VIII [Nico... 60 9e-09
pir||S58541 hypothetical protein 29 - maize chloroplast|gi|... 59 3e-08
sp|P12177|PETN_MARPO Cytochrome B6-F complex subunit VIII (... 57 6e-08
pir||T07450 hypothetical protein 29 - Japanese black pine c... 56 1e-07
dbj|BAB84209.1| cytochrome b/f complex subunit [Psilotum nu... 55 3e-07
>ref|NP_054489.1| cytochrome b6/f complex subunit VIII [Nicotiana
tabacum]|gi|13518325|ref|NP_084684.1| cytochrome b6/f
complex subunit VIII [Oenothera elata subsp.
hookeri]|gi|11497517|ref|NP_054925.1| cytochrome b6/f
complex subunit VIII [Spinacia
oleracea]|gi|82526|pir||JQ0212 hypothetical 3K protein
(trnI-trnC intergenic region) - rice
chloroplast|gi|28261710|ref|NP_783225.1| cytochrome
b6/f complex subunit N [Atropa
belladonna]|gi|5881687|dbj|BAA84378.1| ycf6
[Arabidopsis thaliana]|gi|7636098|emb|CAB88718.1| ycf6
protein [Spinacia oleracea]|gi|11970|emb|CAA33985.1|
ORF29 [Oryza sativa (japonica
cultivar-group)]|gi|19920160|gb|AAM08592.1|AC092750_26
Hypothetical protein ORF29 from chromosome 10
chloroplast insertion [Oryza sativa (japonica
cultivar-group)]|gi|140301|sp|P12178|PETN_ARATH
Cytochrome B6-F complex subunit VIII (Cytochrome b6f
complex subunit petN)|gi|20068324|emb|CAC88037.1|
cytochrome b6/f complex subunit N [Atropa
belladonna]|gi|4958866|dbj|BAA78039.1| ORF29 [Triticum
aestivum]|gi|13928194|dbj|BAB47023.1| ycf6 [Triticum
aestivum]|gi|226688|prf||1603356N ORF
29|gi|13358976|dbj|BAB33193.1| hypothetical protein
[Lotus japonicus]|gi|2924260|emb|CAA77412.1| Ycf6
protein [Nicotiana
tabacum]|gi|13518435|ref|NP_084795.1| cytochrome b6/f
complex subunit VIII [Lotus
japonicus]|gi|11466776|ref|NP_039372.1| cytochrome b6/f
complex subunit VIII [Oryza sativa (japonica
cultivar-group)]|gi|21327352|gb|AAM48257.1|AC122148_10
Hypothetical protein ORF29 from chromosome 10
chloroplast insertion [Oryza sativa (japonica
cultivar-group)]|gi|6723740|emb|CAB67149.1| cytochrome
b6f complex subunit VIII [Oenothera elata subsp.
hookeri]|gi|14017561|ref|NP_114248.1| cytochrome b6/f
complex subunit VIII [Triticum
aestivum]|gi|7525026|ref|NP_051052.1| cytochrome b6/f
complex subunit VIII [Arabidopsis thaliana]
Length = 29
Score = 60.1 bits (144), Expect = 9e-09
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +1
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 87
MDIVSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
>pir||S58541 hypothetical protein 29 - maize
chloroplast|gi|902211|emb|CAA60275.1| hypothetical
protein [Zea mays]|gi|14285660|sp|Q33302|PETN_MAIZE
Cytochrome B6-F complex subunit VIII (Cytochrome b6f
complex subunit petN)|gi|11467181|ref|NP_043014.1|
cytochrome b6/f complex subunit VIII [Zea mays]
Length = 29
Score = 58.5 bits (140), Expect = 3e-08
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = +1
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 87
MDIVSL WAALMVVFTFSLSLVVWGRSGL
Sbjct: 1 MDIVSLTWAALMVVFTFSLSLVVWGRSGL 29
>sp|P12177|PETN_MARPO Cytochrome B6-F complex subunit VIII (Cytochrome b6f complex
subunit petN)|gi|81345|pir||S01572 hypothetical protein
29 - liverwort (Marchantia polymorpha) chloroplast
Length = 29
Score = 57.4 bits (137), Expect = 6e-08
Identities = 25/29 (86%), Positives = 29/29 (99%)
Frame = +1
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 87
MDI+++AWAALMV+FTFSLSLVVWGRSGL
Sbjct: 1 MDIINIAWAALMVIFTFSLSLVVWGRSGL 29
>pir||T07450 hypothetical protein 29 - Japanese black pine
chloroplast|gi|1262611|dbj|BAA04328.1| ORF29 [Pinus
thunbergii]|gi|1175649|sp|P41611|PETN_PINTH Cytochrome
B6-F complex subunit VIII (Cytochrome b6f complex
subunit petN)|gi|7524617|ref|NP_042371.1| cytochrome
b6/f complex subunit VIII [Pinus thunbergii]
Length = 29
Score = 56.2 bits (134), Expect = 1e-07
Identities = 26/29 (89%), Positives = 27/29 (92%)
Frame = +1
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 87
MDIV + WAALMVVFTFSLSLVVWGRSGL
Sbjct: 1 MDIVGITWAALMVVFTFSLSLVVWGRSGL 29
>dbj|BAB84209.1| cytochrome b/f complex subunit [Psilotum
nudum]|gi|22653934|sp|Q8WI23|PETN_PSINU Cytochrome B6-F
complex subunit VIII (Cytochrome b6f complex subunit
petN)|gi|18860304|ref|NP_569622.1| cytochrome b6/f
complex subunit VIII [Psilotum nudum]
Length = 29
Score = 55.1 bits (131), Expect = 3e-07
Identities = 24/29 (82%), Positives = 28/29 (95%)
Frame = +1
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 87
MD VS+AWAALMV+FTFS+SLVVWGR+GL
Sbjct: 1 MDTVSIAWAALMVIFTFSISLVVWGRNGL 29
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 5
effective length of database: 424,769,892
effective search space used: 10194477408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)