BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rps2.f
(711 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_051048.1| ribosomal protein S2 [Arabidopsis thaliana... 478 e-134
sp|P06355|RR2_TOBAC Chloroplast 30S ribosomal protein S2|gi... 431 e-120
ref|NP_054921.1| ribosomal protein S2 [Spinacia oleracea]|g... 429 e-119
dbj|BAB33197.1| ribosomal protein S2 [Lotus japonicus]|gi|2... 428 e-119
dbj|BAB72234.1| ribosomal protein subunit 2 [Cistanche dese... 426 e-118
>ref|NP_051048.1| ribosomal protein S2 [Arabidopsis
thaliana]|gi|6685912|sp|P56797|RR2_ARATH Chloroplast 30S
ribosomal protein S2|gi|5881683|dbj|BAA84374.1|
ribosomal protein S2 [Arabidopsis thaliana]
Length = 236
Score = 478 bits (1229), Expect = e-134
Identities = 236/236 (100%), Positives = 236/236 (100%)
Frame = +1
Query: 1 MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 180
MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1 MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60
Query: 181 VFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRD 360
VFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRD
Sbjct: 61 VFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRD 120
Query: 361 LRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALREC 540
LRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALREC
Sbjct: 121 LRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALREC 180
Query: 541 ITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQNS 708
ITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQNS
Sbjct: 181 ITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQNS 236
>sp|P06355|RR2_TOBAC Chloroplast 30S ribosomal protein S2|gi|11814|emb|CAA77345.1|
ribosomal protein S2 [Nicotiana
tabacum]|gi|225274|prf||1211235J ribosomal protein
S2|gi|20068320|emb|CAC88033.1| ribosomal protein S2
[Atropa belladonna]|gi|28261706|ref|NP_783221.1|
ribosomal protein S2 [Atropa
belladonna]|gi|70856|pir||R3NT2 ribosomal protein S2,
chloroplast - common tobacco
chloroplast|gi|11465943|ref|NP_054485.1| ribosomal
protein S2 [Nicotiana tabacum]
Length = 236
Score = 431 bits (1108), Expect = e-120
Identities = 211/235 (89%), Positives = 221/235 (93%)
Frame = +1
Query: 1 MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 180
MT+RYWNI+LEEMM AGVHFGHGTRKWNP+MAPYISAKRKGIHI NLTRTARFLSEACDL
Sbjct: 1 MTRRYWNINLEEMMEAGVHFGHGTRKWNPKMAPYISAKRKGIHITNLTRTARFLSEACDL 60
Query: 181 VFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRD 360
VFDAASRGKQFLIVGTKNKAAD V AAIRARCHYVNKKWLGGMLTNWSTTE RLHKFRD
Sbjct: 61 VFDAASRGKQFLIVGTKNKAADSVEWAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120
Query: 361 LRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALREC 540
LR EQKT NRLPKRDAA+LKRQLSRL+TYLGGIKYMTG+PDIVII+DQ EEYTALREC
Sbjct: 121 LRMEQKTGRLNRLPKRDAAMLKRQLSRLQTYLGGIKYMTGVPDIVIIVDQHEEYTALREC 180
Query: 541 ITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQN 705
ITLGIPTI L DTNC+PDLADISIPANDDAI+SIR ILNKLVFAICEGRSSYI+N
Sbjct: 181 ITLGIPTICLTDTNCDPDLADISIPANDDAISSIRLILNKLVFAICEGRSSYIRN 235
>ref|NP_054921.1| ribosomal protein S2 [Spinacia oleracea]|gi|7636094|emb|CAB88714.1|
ribosomal protein S2 [Spinacia
oleracea]|gi|133916|sp|P08242|RR2_SPIOL Chloroplast 30S
ribosomal protein S2|gi|70857|pir||R3SP2 ribosomal
protein S2, chloroplast - spinach chloroplast
Length = 236
Score = 429 bits (1102), Expect = e-119
Identities = 211/235 (89%), Positives = 220/235 (92%)
Frame = +1
Query: 1 MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 180
MT+RYWNI+LEEMM AGVHFGHGTRKWNPRM+PYISAK KGIHIINLTRTARFLSEACDL
Sbjct: 1 MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDL 60
Query: 181 VFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRD 360
VFDA+SRGKQFLIVGTKNKAAD V+RAAIRARCHYVNKKWLGGMLTNWSTTE RLHKFRD
Sbjct: 61 VFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120
Query: 361 LRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALREC 540
LR EQ RLPKRDAAV+KRQLS L+TYLGGIKYMTGLPDIVII+DQQEEYTALREC
Sbjct: 121 LRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALREC 180
Query: 541 ITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQN 705
ITLGIPTI LIDTNCNPDLADISIPANDDAIASIR IL KLVFAICEGRSSYI+N
Sbjct: 181 ITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRN 235
>dbj|BAB33197.1| ribosomal protein S2 [Lotus
japonicus]|gi|25009142|sp|Q9BBS6|RR2_LOTJA Chloroplast
30S ribosomal protein S2|gi|13518439|ref|NP_084799.1|
ribosomal protein S2 [Lotus japonicus]
Length = 236
Score = 428 bits (1101), Expect = e-119
Identities = 211/235 (89%), Positives = 219/235 (92%)
Frame = +1
Query: 1 MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 180
MTKRYWNI EEMM AGVHFGHGTRKWNP+MAPYIS KRKGIHIINLTRTARFLSEACDL
Sbjct: 1 MTKRYWNITFEEMMEAGVHFGHGTRKWNPKMAPYISMKRKGIHIINLTRTARFLSEACDL 60
Query: 181 VFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRD 360
VFDAASRGK+FLIVGTK KAADLV+RAAIRARCHYVNKKWLGGMLTNW TTE RL KFR+
Sbjct: 61 VFDAASRGKRFLIVGTKKKAADLVARAAIRARCHYVNKKWLGGMLTNWYTTETRLRKFRE 120
Query: 361 LRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALREC 540
LRTEQKT N LPKRDAA+LKRQLS LETYLGGIKYMTGLPDIVII+DQQEEYTALREC
Sbjct: 121 LRTEQKTGKLNCLPKRDAAILKRQLSHLETYLGGIKYMTGLPDIVIIVDQQEEYTALREC 180
Query: 541 ITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQN 705
ITLGIPTI LIDTNC+PDLADISIPANDDAIASIR ILNKLVFAICEG SSYI+N
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGHSSYIRN 235
>dbj|BAB72234.1| ribosomal protein subunit 2 [Cistanche deserticola]
Length = 245
Score = 426 bits (1096), Expect = e-118
Identities = 209/232 (90%), Positives = 220/232 (94%)
Frame = +1
Query: 1 MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 180
MT RYWNI+LEEM+ AGVHFGHGTRKWNP+MAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1 MTIRYWNINLEEMLEAGVHFGHGTRKWNPKMAPYISAKRKGIHIINLTRTARFLSEACDL 60
Query: 181 VFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRD 360
VFDAASRGKQFLIVGTKNKAAD V+ AAI+ARCH+VNKKWLGGMLTNWSTTE RLHKFRD
Sbjct: 61 VFDAASRGKQFLIVGTKNKAADSVAWAAIKARCHFVNKKWLGGMLTNWSTTEMRLHKFRD 120
Query: 361 LRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALREC 540
LR EQK FNRLPKRDAAV+KRQLSRL+TYLGGIKYMTGLPDIVII+DQ EEYTALREC
Sbjct: 121 LRMEQKMGRFNRLPKRDAAVVKRQLSRLQTYLGGIKYMTGLPDIVIIVDQHEEYTALREC 180
Query: 541 ITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSY 696
ITLGIPTI LIDTNC+PDLADISIPANDDAI+SIR ILNKLVFAICEGRSSY
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAISSIRLILNKLVFAICEGRSSY 232
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 119
effective length of database: 271,130,610
effective search space used: 31722281370
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)