BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rps16.f
         (240 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA84367.1|  ribosomal protein S16 [Arabidopsis thaliana...   159   1e-38
pir||R3IS16  ribosomal protein S16, chloroplast - white must...   147   3e-35
ref|NP_054914.1|  ribosomal protein S16 [Spinacia oleracea]|...   127   3e-29
ref|NP_084806.1|  ribosomal protein S16 [Lotus japonicus]|gi...   126   9e-29
gb|AAA74421.1|  ribosomal protein S16|gi|7440451|pir||T07057...   125   2e-28

>dbj|BAA84367.1| ribosomal protein S16 [Arabidopsis
           thaliana]|gi|6685910|sp|P56806|RR16_ARATH Chloroplast
           30S ribosomal protein S16|gi|7525015|ref|NP_051041.1|
           ribosomal protein S16 [Arabidopsis thaliana]
          Length = 79

 Score =  159 bits (401), Expect = 1e-38
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +1

Query: 1   MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKG 180
           MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKG
Sbjct: 1   MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKG 60

Query: 181 AQPTRTAHDISKKAGIFTE 237
           AQPTRTAHDISKKAGIFTE
Sbjct: 61  AQPTRTAHDISKKAGIFTE 79



>pir||R3IS16 ribosomal protein S16, chloroplast - white mustard
           chloroplast|gi|12217|emb|CAA31944.1| 16S ribosomal
           protein [Sinapis alba]|gi|133812|sp|P10359|RR16_SINAL
           Chloroplast 30S ribosomal protein S16
          Length = 88

 Score =  147 bits (372), Expect = 3e-35
 Identities = 73/79 (92%), Positives = 75/79 (94%)
 Frame = +1

Query: 1   MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKG 180
           MVKLRLKRCGRKQRAVYRI+AIDVR RREGRDL KVGFYDPITNQT+LNL AILDFLKKG
Sbjct: 1   MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLRKVGFYDPITNQTYLNLPAILDFLKKG 60

Query: 181 AQPTRTAHDISKKAGIFTE 237
           AQPTRT HDISKKAGIFTE
Sbjct: 61  AQPTRTVHDISKKAGIFTE 79



>ref|NP_054914.1| ribosomal protein S16 [Spinacia
           oleracea]|gi|7636087|emb|CAB88707.1| ribosomal protein
           S16 [Spinacia oleracea]|gi|19857926|sp|P28807|RR16_SPIOL
           Chloroplast 30S ribosomal protein S16
          Length = 88

 Score =  127 bits (320), Expect = 3e-29
 Identities = 62/79 (78%), Positives = 70/79 (88%)
 Frame = +1

Query: 1   MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKG 180
           MVKLRLKRCGRKQRAVYRI+AIDVR RREGRDL KVGFYDPI +QT+LN+ AILDFL+KG
Sbjct: 1   MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKSQTYLNVPAILDFLEKG 60

Query: 181 AQPTRTAHDISKKAGIFTE 237
           AQPT T +DI K+A +F E
Sbjct: 61  AQPTETVYDILKRAEVFKE 79



>ref|NP_084806.1| ribosomal protein S16 [Lotus japonicus]|gi|13358987|dbj|BAB33204.1|
           ribosomal protein S16 [Lotus
           japonicus]|gi|14195185|sp|P58125|RR16_LOTJA Chloroplast
           30S ribosomal protein S16
          Length = 80

 Score =  126 bits (316), Expect = 9e-29
 Identities = 61/79 (77%), Positives = 69/79 (87%)
 Frame = +1

Query: 1   MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKG 180
           MVKLRLKRCG+KQRAVYRI+AIDVR RREGRDL KVGFYDPI NQT+LN+  IL+FL++G
Sbjct: 1   MVKLRLKRCGKKQRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNIPVILNFLEQG 60

Query: 181 AQPTRTAHDISKKAGIFTE 237
           AQPT T  DISKKAG F +
Sbjct: 61  AQPTGTVQDISKKAGFFMD 79



>gb|AAA74421.1| ribosomal protein S16|gi|7440451|pir||T07057 ribosomal protein S16,
           chloroplast - potato|gi|1350878|sp|P32087|RR16_SOLTU
           Chloroplast 30S ribosomal protein S16
          Length = 88

 Score =  125 bits (314), Expect = 2e-28
 Identities = 62/79 (78%), Positives = 68/79 (85%)
 Frame = +1

Query: 1   MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKG 180
           MVKLRLKRCGRKQRAVYRI+AIDVR RREG+DL KVGFYDPI NQT+LN+ AIL FL+KG
Sbjct: 1   MVKLRLKRCGRKQRAVYRIVAIDVRSRREGKDLQKVGFYDPIKNQTYLNVPAILYFLEKG 60

Query: 181 AQPTRTAHDISKKAGIFTE 237
           AQPT T  DI KKA +F E
Sbjct: 61  AQPTETVQDILKKAEVFKE 79



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 55
effective length of database: 357,384,242
effective search space used: 8577221808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)