BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At5g40480.f
(5760 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198864.1| nuclear pore protein -like; protein id: At... 3726 0.0
dbj|BAB10497.1| nuclear pore protein-like [Arabidopsis thal... 3697 0.0
ref|XP_193000.1| nucleoporin 210 [Mus musculus] 275 6e-72
gb|AAF21969.1|AF113751_1 nuclear pore membrane glycoprotein... 271 7e-71
ref|NP_079199.2| nucleoporin 210; nuclear pore membrane gly... 270 1e-70
>ref|NP_198864.1| nuclear pore protein -like; protein id: At5g40480.1 [Arabidopsis
thaliana]
Length = 1919
Score = 3726 bits (9663), Expect = 0.0
Identities = 1880/1919 (97%), Positives = 1880/1919 (97%)
Frame = +1
Query: 1 MVPVXXXXXXXXXXXXXXXXXXXXVSGPHITDVNILLPPKMKNPVEYRLQGSDGCFKWSW 180
MVPV VSGPHITDVNILLPPKMKNPVEYRLQGSDGCFKWSW
Sbjct: 1 MVPVSFCFFFLLLLLSAGESSSQLVSGPHITDVNILLPPKMKNPVEYRLQGSDGCFKWSW 60
Query: 181 DHHDILSVTPEFNSSSHCSTSARLRSISPYSGRKETAVYATDIQTGMVIRCKVFIDNFSR 360
DHHDILSVTPEFNSSSHCSTSARLRSISPYSGRKETAVYATDIQTGMVIRCKVFIDNFSR
Sbjct: 61 DHHDILSVTPEFNSSSHCSTSARLRSISPYSGRKETAVYATDIQTGMVIRCKVFIDNFSR 120
Query: 361 IQIFHNSIKLDLDGLSMLRVRAFDNEDNEFSSLVGLQFIWKLMPESGGSTHHLAHVPLKE 540
IQIFHNSIKLDLDGLSMLRVRAFDNEDNEFSSLVGLQFIWKLMPESGGSTHHLAHVPLKE
Sbjct: 121 IQIFHNSIKLDLDGLSMLRVRAFDNEDNEFSSLVGLQFIWKLMPESGGSTHHLAHVPLKE 180
Query: 541 SPLTDCGGLCGYLDIQKKLEDSGVFADLFVVKGTKIGHEKVSVHLLEAPLTHIADEIVLT 720
SPLTDCGGLCGYLDIQKKLEDSGVFADLFVVKGTKIGHEKVSVHLLEAPLTHIADEIVLT
Sbjct: 181 SPLTDCGGLCGYLDIQKKLEDSGVFADLFVVKGTKIGHEKVSVHLLEAPLTHIADEIVLT 240
Query: 721 VAEAMSLEPRSPVYVLMGASFGYTLKVMRGNVPQAVDLPSPHHRWSVLNSSVAQVDSLIG 900
VAEAMSLEPRSPVYVLMGASFGYTLKVMRGNVPQAVDLPSPHHRWSVLNSSVAQVDSLIG
Sbjct: 241 VAEAMSLEPRSPVYVLMGASFGYTLKVMRGNVPQAVDLPSPHHRWSVLNSSVAQVDSLIG 300
Query: 901 LTKALSLGVTTVVVEDTRVAGHIQGSSINVVTPDTLILYISPWSMSGDLITESKPFPSSM 1080
LTKALSLGVTTVVVEDTRVAGHIQGSSINVVTPDTLILYISPWSMSGDLITESKPFPSSM
Sbjct: 301 LTKALSLGVTTVVVEDTRVAGHIQGSSINVVTPDTLILYISPWSMSGDLITESKPFPSSM 360
Query: 1081 HWYVVSGRQYLIQMKIFSGRPDAHEIYITETDDIKLYGKDSDYWKIVSLPDELSSEYGQR 1260
HWYVVSGRQYLIQMKIFSGRPDAHEIYITETDDIKLYGKDSDYWKIVSLPDELSSEYGQR
Sbjct: 361 HWYVVSGRQYLIQMKIFSGRPDAHEIYITETDDIKLYGKDSDYWKIVSLPDELSSEYGQR 420
Query: 1261 NSRILNAISPGLGELTSTLTYFSGHQESKEVLKVVQEIRVCEKVQFTLNSEDDTPKVLLP 1440
NSRILNAISPGLGELTSTLTYFSGHQESKEVLKVVQEIRVCEKVQFTLNSEDDTPKVLLP
Sbjct: 421 NSRILNAISPGLGELTSTLTYFSGHQESKEVLKVVQEIRVCEKVQFTLNSEDDTPKVLLP 480
Query: 1441 WTPAVYQEMELIVTGGCAKASSDYKWFTSDISILSVSAYGIIQAKRPGIATVKVVSTFDS 1620
WTPAVYQEMELIVTGGCAKASSDYKWFTSDISILSVSAYGIIQAKRPGIATVKVVSTFDS
Sbjct: 481 WTPAVYQEMELIVTGGCAKASSDYKWFTSDISILSVSAYGIIQAKRPGIATVKVVSTFDS 540
Query: 1621 QNFDEVIVEVSIPSSMVMLQNFPVETVVGSHLKAAVTMKALNGATFSRCDAFNSLIKWKT 1800
QNFDEVIVEVSIPSSMVMLQNFPVETVVGSHLKAAVTMKALNGATFSRCDAFNSLIKWKT
Sbjct: 541 QNFDEVIVEVSIPSSMVMLQNFPVETVVGSHLKAAVTMKALNGATFSRCDAFNSLIKWKT 600
Query: 1801 GSESFVIVNATSEMMMLDELRSMDSSPPCSRASIYTASTGRTVLQATLAKEFHYFDKSLS 1980
GSESFVIVNATSEMMMLDELRSMDSSPPCSRASIYTASTGRTVLQATLAKEFHYFDKSLS
Sbjct: 601 GSESFVIVNATSEMMMLDELRSMDSSPPCSRASIYTASTGRTVLQATLAKEFHYFDKSLS 660
Query: 1981 ESIDLKATLTIGAYLPLSVRQDSDGNHHGGYWFDKAQEETDFGVSKLYLVPGTYVDVMLL 2160
ESIDLKATLTIGAYLPLSVRQDSDGNHHGGYWFDKAQEETDFGVSKLYLVPGTYVDVMLL
Sbjct: 661 ESIDLKATLTIGAYLPLSVRQDSDGNHHGGYWFDKAQEETDFGVSKLYLVPGTYVDVMLL 720
Query: 2161 GGPERWDDNVEFTETVKTLYEDEEDLTSRVNVHHEVDRRANMYRISCQKLGSYKLVFLRG 2340
GGPERWDDNVEFTETVKTLYEDEEDLTSRVNVHHEVDRRANMYRISCQKLGSYKLVFLRG
Sbjct: 721 GGPERWDDNVEFTETVKTLYEDEEDLTSRVNVHHEVDRRANMYRISCQKLGSYKLVFLRG 780
Query: 2341 NLLGIDHPVPAVAEALLSVHCSLPSSVVLIVDEPVNKLDVIRAASQADRAPGRLRVTPVT 2520
NLLGIDHPVPAVAEALLSVHCSLPSSVVLIVDEPVNKLDVIRAASQADRAPGRLRVTPVT
Sbjct: 781 NLLGIDHPVPAVAEALLSVHCSLPSSVVLIVDEPVNKLDVIRAASQADRAPGRLRVTPVT 840
Query: 2521 VANGQIIRVAAVGISEFGEAFSNSSTLSLRWELTSCNNLAYWDDDYNSKMTKSGWERFLA 2700
VANGQIIRVAAVGISEFGEAFSNSSTLSLRWELTSCNNLAYWDDDYNSKMTKSGWERFLA
Sbjct: 841 VANGQIIRVAAVGISEFGEAFSNSSTLSLRWELTSCNNLAYWDDDYNSKMTKSGWERFLA 900
Query: 2701 LRNESGLCTVRATVSGIDYSFKSQYSTLLPQGSESTLTDAVRLQLVSTLRVTPEFNLVFF 2880
LRNESGLCTVRATVSGIDYSFKSQYSTLLPQGSESTLTDAVRLQLVSTLRVTPEFNLVFF
Sbjct: 901 LRNESGLCTVRATVSGIDYSFKSQYSTLLPQGSESTLTDAVRLQLVSTLRVTPEFNLVFF 960
Query: 2881 NPNAKVNLSMTGGSCLWEAVVNNSRVAEVIRPPSGLQCSQMMLSPKGLGTTIVTVYDIGV 3060
NPNAKVNLSMTGGSCLWEAVVNNSRVAEVIRPPSGLQCSQMMLSPKGLGTTIVTVYDIGV
Sbjct: 961 NPNAKVNLSMTGGSCLWEAVVNNSRVAEVIRPPSGLQCSQMMLSPKGLGTTIVTVYDIGV 1020
Query: 3061 SPPLSALALIKVADVDWIKIASGDEISIMEGSTHSIDLLTGIDDGMTFDSSQYSLMDIMV 3240
SPPLSALALIKVADVDWIKIASGDEISIMEGSTHSIDLLTGIDDGMTFDSSQYSLMDIMV
Sbjct: 1021 SPPLSALALIKVADVDWIKIASGDEISIMEGSTHSIDLLTGIDDGMTFDSSQYSLMDIMV 1080
Query: 3241 HIEDDLVEHVTVDEDSLSVGEHVATSSFKIAARRLGITTLYVSARQQSGGKVLSQTIKVE 3420
HIEDDLVEHVTVDEDSLSVGEHVATSSFKIAARRLGITTLYVSARQQSGGKVLSQTIKVE
Sbjct: 1081 HIEDDLVEHVTVDEDSLSVGEHVATSSFKIAARRLGITTLYVSARQQSGGKVLSQTIKVE 1140
Query: 3421 VYSPPRLHPQGIFLVPGASYVLTIEGGPTMNVSVDYTTVDNEVAKIEKSGRLYATSPGNT 3600
VYSPPRLHPQGIFLVPGASYVLTIEGGPTMNVSVDYTTVDNEVAKIEKSGRLYATSPGNT
Sbjct: 1141 VYSPPRLHPQGIFLVPGASYVLTIEGGPTMNVSVDYTTVDNEVAKIEKSGRLYATSPGNT 1200
Query: 3601 TIYATIYGSEGAVICQAIGNAEVGLPATAMLVAQSDTVAVGHEMPVSPSFPEGDLLSFYE 3780
TIYATIYGSEGAVICQAIGNAEVGLPATAMLVAQSDTVAVGHEMPVSPSFPEGDLLSFYE
Sbjct: 1201 TIYATIYGSEGAVICQAIGNAEVGLPATAMLVAQSDTVAVGHEMPVSPSFPEGDLLSFYE 1260
Query: 3781 LCSAYKWTIEDEKVLIFIASSINVEENAGFVNVVQGRSAGKTRVTIAFSCDFVSPGLYSE 3960
LCSAYKWTIEDEKVLIFIASSINVEENAGFVNVVQGRSAGKTRVTIAFSCDFVSPGLYSE
Sbjct: 1261 LCSAYKWTIEDEKVLIFIASSINVEENAGFVNVVQGRSAGKTRVTIAFSCDFVSPGLYSE 1320
Query: 3961 SRTYEASMILSVVPDLPLSLGAPMTWVLPPFYTSSGLLPSSSEPQKHRDGQSHRGNIVYS 4140
SRTYEASMILSVVPDLPLSLGAPMTWVLPPFYTSSGLLPSSSEPQKHRDGQSHRGNIVYS
Sbjct: 1321 SRTYEASMILSVVPDLPLSLGAPMTWVLPPFYTSSGLLPSSSEPQKHRDGQSHRGNIVYS 1380
Query: 4141 ILKDCSSRADFERDTISINGGSVKTTDSNNVACIQAKDRTSGRIEIAACVRVAEVAQIRM 4320
ILKDCSSRADFERDTISINGGSVKTTDSNNVACIQAKDRTSGRIEIAACVRVAEVAQIRM
Sbjct: 1381 ILKDCSSRADFERDTISINGGSVKTTDSNNVACIQAKDRTSGRIEIAACVRVAEVAQIRM 1440
Query: 4321 KSEGIPFHVIDLAVGGELELPINYYDTLGIPFLEAHGVTTYNVETNHRDVVFIKTVNDQP 4500
KSEGIPFHVIDLAVGGELELPINYYDTLGIPFLEAHGVTTYNVETNHRDVVFIKTVNDQP
Sbjct: 1441 KSEGIPFHVIDLAVGGELELPINYYDTLGIPFLEAHGVTTYNVETNHRDVVFIKTVNDQP 1500
Query: 4501 SAYIKGIKHGKALIRVSIGDNLRKSDYVLVSVGAHIFPQNPVIHTGNLLNFSITGADNEV 4680
SAYIKGIKHGKALIRVSIGDNLRKSDYVLVSVGAHIFPQNPVIHTGNLLNFSITGADNEV
Sbjct: 1501 SAYIKGIKHGKALIRVSIGDNLRKSDYVLVSVGAHIFPQNPVIHTGNLLNFSITGADNEV 1560
Query: 4681 TGQWFTSNRSVISVNVASGQAKAISQGSTHGHGLKLQTKVTVLFGNTIYVDSPGETLTNV 4860
TGQWFTSNRSVISVNVASGQAKAISQGSTHGHGLKLQTKVTVLFGNTIYVDSPGETLTNV
Sbjct: 1561 TGQWFTSNRSVISVNVASGQAKAISQGSTHGHGLKLQTKVTVLFGNTIYVDSPGETLTNV 1620
Query: 4861 HVPAEGYKFPVKFRENKFAVTEHGNKATFNCQVDPPFIGYTKPWMDLDTGNTYCLFFPYS 5040
HVPAEGYKFPVKFRENKFAVTEHGNKATFNCQVDPPFIGYTKPWMDLDTGNTYCLFFPYS
Sbjct: 1621 HVPAEGYKFPVKFRENKFAVTEHGNKATFNCQVDPPFIGYTKPWMDLDTGNTYCLFFPYS 1680
Query: 5041 PEHLVHSMSITKDMKPHVSFSVDASLKEARRVSGSASALLIGGFSVTGPDKLNINPDSNT 5220
PEHLVHSMSITKDMKPHVSFSVDASLKEARRVSGSASALLIGGFSVTGPDKLNINPDSNT
Sbjct: 1681 PEHLVHSMSITKDMKPHVSFSVDASLKEARRVSGSASALLIGGFSVTGPDKLNINPDSNT 1740
Query: 5221 TIISLVGNTDVQIHCRNKGRLSISLIKRDDFGIAGHAQYKVNVLRSEQFTDRIIITLPAT 5400
TIISLVGNTDVQIHCRNKGRLSISLIKRDDFGIAGHAQYKVNVLRSEQFTDRIIITLPAT
Sbjct: 1741 TIISLVGNTDVQIHCRNKGRLSISLIKRDDFGIAGHAQYKVNVLRSEQFTDRIIITLPAT 1800
Query: 5401 GQIVEIDVCYDTGESLVASSKDGYSVLLKXXXXXXXXXXXXXXXXXXXDRQVPTGATGTA 5580
GQIVEIDVCYDTGESLVASSKDGYSVLLK DRQVPTGATGTA
Sbjct: 1801 GQIVEIDVCYDTGESLVASSKDGYSVLLKILWGVLVLVVSVIILMKVIDRQVPTGATGTA 1860
Query: 5581 TYSGNAAQGTPERRSGTVIYHEESPRTPSPFMEYVKRTVDETPYYRREGRRRFNPQNTM 5757
TYSGNAAQGTPERRSGTVIYHEESPRTPSPFMEYVKRTVDETPYYRREGRRRFNPQNTM
Sbjct: 1861 TYSGNAAQGTPERRSGTVIYHEESPRTPSPFMEYVKRTVDETPYYRREGRRRFNPQNTM 1919
>dbj|BAB10497.1| nuclear pore protein-like [Arabidopsis thaliana]
Length = 1962
Score = 3697 bits (9587), Expect = 0.0
Identities = 1880/1962 (95%), Positives = 1880/1962 (95%), Gaps = 43/1962 (2%)
Frame = +1
Query: 1 MVPVXXXXXXXXXXXXXXXXXXXXVSGPHITDVNILLPPKMKNPVEYRLQGSDGCFKWSW 180
MVPV VSGPHITDVNILLPPKMKNPVEYRLQGSDGCFKWSW
Sbjct: 1 MVPVSFCFFFLLLLLSAGESSSQLVSGPHITDVNILLPPKMKNPVEYRLQGSDGCFKWSW 60
Query: 181 DHHDILSVTPEFNSSSHCSTSARLRSISPYSGRKETAVYATDIQTGMVIRCKVFIDNFSR 360
DHHDILSVTPEFNSSSHCSTSARLRSISPYSGRKETAVYATDIQTGMVIRCKVFIDNFSR
Sbjct: 61 DHHDILSVTPEFNSSSHCSTSARLRSISPYSGRKETAVYATDIQTGMVIRCKVFIDNFSR 120
Query: 361 IQIFHNSIKLDLDGLSMLRVRAFDNEDNEFSSLVGLQFIWKLMPESGGSTHHLAHVPLKE 540
IQIFHNSIKLDLDGLSMLRVRAFDNEDNEFSSLVGLQFIWKLMPESGGSTHHLAHVPLKE
Sbjct: 121 IQIFHNSIKLDLDGLSMLRVRAFDNEDNEFSSLVGLQFIWKLMPESGGSTHHLAHVPLKE 180
Query: 541 SPLTDCGGLCGYLDIQKKLEDSGVFADLFVVKGTKIGHEKVSVHLLEAPLTHIADEIVLT 720
SPLTDCGGLCGYLDIQKKLEDSGVFADLFVVKGTKIGHEKVSVHLLEAPLTHIADEIVLT
Sbjct: 181 SPLTDCGGLCGYLDIQKKLEDSGVFADLFVVKGTKIGHEKVSVHLLEAPLTHIADEIVLT 240
Query: 721 VAEAMSLEPRSPVYVLMGASFGYTLKVMRGNVPQAVDLPSPHHRWSVLNSSVAQVDSLIG 900
VAEAMSLEPRSPVYVLMGASFGYTLKVMRGNVPQAVDLPSPHHRWSVLNSSVAQVDSLIG
Sbjct: 241 VAEAMSLEPRSPVYVLMGASFGYTLKVMRGNVPQAVDLPSPHHRWSVLNSSVAQVDSLIG 300
Query: 901 LTKALSLGVTTVVVEDTRVAGHIQGSSINVVTPDTLILYISPWSMSGDLITESKPFPSSM 1080
LTKALSLGVTTVVVEDTRVAGHIQGSSINVVTPDTLILYISPWSMSGDLITESKPFPSSM
Sbjct: 301 LTKALSLGVTTVVVEDTRVAGHIQGSSINVVTPDTLILYISPWSMSGDLITESKPFPSSM 360
Query: 1081 HWYVVSGRQYLIQMKIFSGRPDAHEIYITETDDIKLYGKDSDYWKIVSLPDELSSEYGQR 1260
HWYVVSGRQYLIQMKIFSGRPDAHEIYITETDDIKLYGKDSDYWKIVSLPDELSSEYGQR
Sbjct: 361 HWYVVSGRQYLIQMKIFSGRPDAHEIYITETDDIKLYGKDSDYWKIVSLPDELSSEYGQR 420
Query: 1261 NSRILNAISPGLGELTSTLTYFSGHQESKEVLKVVQEIRVCEKVQFTLNSEDDTPKVLLP 1440
NSRILNAISPGLGELTSTLTYFSGHQESKEVLKVVQEIRVCEKVQFTLNSEDDTPKVLLP
Sbjct: 421 NSRILNAISPGLGELTSTLTYFSGHQESKEVLKVVQEIRVCEKVQFTLNSEDDTPKVLLP 480
Query: 1441 WTPAVYQEMELIVTGGCAKASSDYKWFTSDISILSVSAYGIIQAKRPGIATVKVVSTFDS 1620
WTPAVYQEMELIVTGGCAKASSDYKWFTSDISILSVSAYGIIQAKRPGIATVKVVSTFDS
Sbjct: 481 WTPAVYQEMELIVTGGCAKASSDYKWFTSDISILSVSAYGIIQAKRPGIATVKVVSTFDS 540
Query: 1621 QNFDEVIVEVSIPSSMVMLQNFPVETVVGSHLKAAVTMKALNGATFSRCDAFNSLIKWKT 1800
QNFDEVIVEVSIPSSMVMLQNFPVETVVGSHLKAAVTMKALNGATFSRCDAFNSLIKWKT
Sbjct: 541 QNFDEVIVEVSIPSSMVMLQNFPVETVVGSHLKAAVTMKALNGATFSRCDAFNSLIKWKT 600
Query: 1801 GSESFVIVNATSEMMMLDELRSMDSSPPCSRASIYTASTGRTVLQATLAKEFHYFDKSLS 1980
GSESFVIVNATSEMMMLDELRSMDSSPPCSRASIYTASTGRTVLQATLAKEFHYFDKSLS
Sbjct: 601 GSESFVIVNATSEMMMLDELRSMDSSPPCSRASIYTASTGRTVLQATLAKEFHYFDKSLS 660
Query: 1981 ESIDLKATLTIGAYLPLSVRQDSDGNHHGGYWFDKAQEETDFGVSKLYLVPGTYVDVMLL 2160
ESIDLKATLTIGAYLPLSVRQDSDGNHHGGYWFDKAQEETDFGVSKLYLVPGTYVDVMLL
Sbjct: 661 ESIDLKATLTIGAYLPLSVRQDSDGNHHGGYWFDKAQEETDFGVSKLYLVPGTYVDVMLL 720
Query: 2161 GGPERWDDNVEFTETVKTLYEDEEDLTSRVNVHHEVDRRANMYRISCQKLGSYKLVFLRG 2340
GGPERWDDNVEFTETVKTLYEDEEDLTSRVNVHHEVDRRANMYRISCQKLGSYKLVFLRG
Sbjct: 721 GGPERWDDNVEFTETVKTLYEDEEDLTSRVNVHHEVDRRANMYRISCQKLGSYKLVFLRG 780
Query: 2341 NLLGIDHPVPAVAEALLSVHCSLPSSVVLIVDEPVNKLDVIRAASQADRAPGRLRVTPVT 2520
NLLGIDHPVPAVAEALLSVHCSLPSSVVLIVDEPVNKLDVIRAASQADRAPGRLRVTPVT
Sbjct: 781 NLLGIDHPVPAVAEALLSVHCSLPSSVVLIVDEPVNKLDVIRAASQADRAPGRLRVTPVT 840
Query: 2521 VANGQIIRVAAVGISEFGEAFSNSSTLSLRWELTSCNNLAYWDDDYNSKMTKSGWERFLA 2700
VANGQIIRVAAVGISEFGEAFSNSSTLSLRWELTSCNNLAYWDDDYNSKMTKSGWERFLA
Sbjct: 841 VANGQIIRVAAVGISEFGEAFSNSSTLSLRWELTSCNNLAYWDDDYNSKMTKSGWERFLA 900
Query: 2701 LRNESGLCTVRATVSGIDYSFKSQYSTLLPQGSESTLTDAVRLQLVSTLRVTPEFNLVFF 2880
LRNESGLCTVRATVSGIDYSFKSQYSTLLPQGSESTLTDAVRLQLVSTLRVTPEFNLVFF
Sbjct: 901 LRNESGLCTVRATVSGIDYSFKSQYSTLLPQGSESTLTDAVRLQLVSTLRVTPEFNLVFF 960
Query: 2881 NPNA------------KVNLSMTGGSCLWEAVVNNSRVAEVIRPPSGLQCSQMMLSPKGL 3024
NPNA KVNLSMTGGSCLWEAVVNNSRVAEVIRPPSGLQCSQMMLSPKGL
Sbjct: 961 NPNAKVCSTNSIVFHPKVNLSMTGGSCLWEAVVNNSRVAEVIRPPSGLQCSQMMLSPKGL 1020
Query: 3025 GTTIVTVYDIGVSPPLSALALIKVADVDWIKIASGDEISIMEGSTHSIDLLTGIDDGMTF 3204
GTTIVTVYDIGVSPPLSALALIKVADVDWIKIASGDEISIMEGSTHSIDLLTGIDDGMTF
Sbjct: 1021 GTTIVTVYDIGVSPPLSALALIKVADVDWIKIASGDEISIMEGSTHSIDLLTGIDDGMTF 1080
Query: 3205 DSSQYSLMDIMVHIEDDLVEHVTVDEDSLSVGEHVATSSFKIAARRLGITTLYVSARQQS 3384
DSSQYSLMDIMVHIEDDLVEHVTVDEDSLSVGEHVATSSFKIAARRLGITTLYVSARQQS
Sbjct: 1081 DSSQYSLMDIMVHIEDDLVEHVTVDEDSLSVGEHVATSSFKIAARRLGITTLYVSARQQS 1140
Query: 3385 GGKVLSQTIKVEVYSPPRLHPQGIFLVPGASYVLTIEGGPTMNVSVDYTTVDNEVAKIEK 3564
GGKVLSQTIKVEVYSPPRLHPQGIFLVPGASYVLTIEGGPTMNVSVDYTTVDNEVAKIEK
Sbjct: 1141 GGKVLSQTIKVEVYSPPRLHPQGIFLVPGASYVLTIEGGPTMNVSVDYTTVDNEVAKIEK 1200
Query: 3565 SGRLYATSPGNTTIYATIYGSEGAVICQAIGNAEVGLPATAMLVAQSDTVAVGHEMPVSP 3744
SGRLYATSPGNTTIYATIYGSEGAVICQAIGNAEVGLPATAMLVAQSDTVAVGHEMPVSP
Sbjct: 1201 SGRLYATSPGNTTIYATIYGSEGAVICQAIGNAEVGLPATAMLVAQSDTVAVGHEMPVSP 1260
Query: 3745 SFPEGDLLSFYELCSAYKWTIEDEKVLIFIASSINVEENAGFVNVVQGRSAGKTRVTIAF 3924
SFPEGDLLSFYELCSAYKWTIEDEKVLIFIASSINVEENAGFVNVVQGRSAGKTRVTIAF
Sbjct: 1261 SFPEGDLLSFYELCSAYKWTIEDEKVLIFIASSINVEENAGFVNVVQGRSAGKTRVTIAF 1320
Query: 3925 SCDFVSPGLYSESRTYEASMILSVVPDLPLSLGAPMTWVLPPFYTSSGLLPSSSEPQKHR 4104
SCDFVSPGLYSESRTYEASMILSVVPDLPLSLGAPMTWVLPPFYTSSGLLPSSSEPQKHR
Sbjct: 1321 SCDFVSPGLYSESRTYEASMILSVVPDLPLSLGAPMTWVLPPFYTSSGLLPSSSEPQKHR 1380
Query: 4105 DGQSHRGNIVYSILKDCSSRADFERDTISINGGSVKTTDSNNVACIQAKDRTSGRIEIAA 4284
DGQSHRGNIVYSILKDCSSRADFERDTISINGGSVKTTDSNNVACIQAKDRTSGRIEIAA
Sbjct: 1381 DGQSHRGNIVYSILKDCSSRADFERDTISINGGSVKTTDSNNVACIQAKDRTSGRIEIAA 1440
Query: 4285 CVRVAEVAQIRMKSEGIPFHVIDLAVGGELELPINYYDTLGIPFLEAHGVTTYNVETNHR 4464
CVRVAEVAQIRMKSEGIPFHVIDLAVGGELELPINYYDTLGIPFLEAHGVTTYNVETNHR
Sbjct: 1441 CVRVAEVAQIRMKSEGIPFHVIDLAVGGELELPINYYDTLGIPFLEAHGVTTYNVETNHR 1500
Query: 4465 DVVFIKTVNDQPSAYIKGIKHGKALIRVSIGDNLRKSDYVLVSVGAHIFPQNPVIHTGNL 4644
DVVFIKTVNDQPSAYIKGIKHGKALIRVSIGDNLRKSDYVLVSVGAHIFPQNPVIHTGNL
Sbjct: 1501 DVVFIKTVNDQPSAYIKGIKHGKALIRVSIGDNLRKSDYVLVSVGAHIFPQNPVIHTGNL 1560
Query: 4645 LNFSITGADNEVTGQWFTSNRSVISVNVASGQAKAISQGSTH----GHGLKLQTKVTVLF 4812
LNFSITGADNEVTGQWFTSNRSVISVNVASGQAKAISQGSTH GHGLKLQTKVTVLF
Sbjct: 1561 LNFSITGADNEVTGQWFTSNRSVISVNVASGQAKAISQGSTHVTFKGHGLKLQTKVTVLF 1620
Query: 4813 GNTIYVDSPGETLTNVHVPAEGYKFPVKFRENKFAVTEHGNKATFNCQVDPPFIGYTKPW 4992
GNTIYVDSPGETLTNVHVPAEGYKFPVKFRENKFAVTEHGNKATFNCQVDPPFIGYTKPW
Sbjct: 1621 GNTIYVDSPGETLTNVHVPAEGYKFPVKFRENKFAVTEHGNKATFNCQVDPPFIGYTKPW 1680
Query: 4993 MDLDTGNTYCLFFPYSPEHLVHSMSITKDMKPHVSFSVDASLKEARRVSGSASALLIGGF 5172
MDLDTGNTYCLFFPYSPEHLVHSMSITKDMKPHVSFSVDASLKEARRVSGSASALLIGGF
Sbjct: 1681 MDLDTGNTYCLFFPYSPEHLVHSMSITKDMKPHVSFSVDASLKEARRVSGSASALLIGGF 1740
Query: 5173 SVTGPDKLNINPDSNTTIISLVGNT---------------------------DVQIHCRN 5271
SVTGPDKLNINPDSNTTIISLVGNT DVQIHCRN
Sbjct: 1741 SVTGPDKLNINPDSNTTIISLVGNTGKFHYPLLVRFLFLMKKCKGYLILLIADVQIHCRN 1800
Query: 5272 KGRLSISLIKRDDFGIAGHAQYKVNVLRSEQFTDRIIITLPATGQIVEIDVCYDTGESLV 5451
KGRLSISLIKRDDFGIAGHAQYKVNVLRSEQFTDRIIITLPATGQIVEIDVCYDTGESLV
Sbjct: 1801 KGRLSISLIKRDDFGIAGHAQYKVNVLRSEQFTDRIIITLPATGQIVEIDVCYDTGESLV 1860
Query: 5452 ASSKDGYSVLLKXXXXXXXXXXXXXXXXXXXDRQVPTGATGTATYSGNAAQGTPERRSGT 5631
ASSKDGYSVLLK DRQVPTGATGTATYSGNAAQGTPERRSGT
Sbjct: 1861 ASSKDGYSVLLKILWGVLVLVVSVIILMKVIDRQVPTGATGTATYSGNAAQGTPERRSGT 1920
Query: 5632 VIYHEESPRTPSPFMEYVKRTVDETPYYRREGRRRFNPQNTM 5757
VIYHEESPRTPSPFMEYVKRTVDETPYYRREGRRRFNPQNTM
Sbjct: 1921 VIYHEESPRTPSPFMEYVKRTVDETPYYRREGRRRFNPQNTM 1962
>ref|XP_193000.1| nucleoporin 210 [Mus musculus]
Length = 1886
Score = 275 bits (703), Expect = 6e-72
Identities = 367/1629 (22%), Positives = 671/1629 (40%), Gaps = 75/1629 (4%)
Frame = +1
Query: 103 ILLPPKMKNPVEYRLQGSDGCFKWSWDHHDILSVTPEFNSSSHCSTSARLRSISPYSGRK 282
+LLP V + L+ S+GC++WS ++ S+ P +S CS A +++ R
Sbjct: 33 VLLPFTRATRVNFTLEASEGCYRWSSTRPEVASIEPLGSSEQQCSQKAVVQARLTQPARL 92
Query: 283 ETAVYATDIQTGMVIRCKVFIDNFSRIQIFHNSIKLDLDGLSM-LRVRAFDNEDNEFSSL 459
+ ++A DI G V+RC +D IQI + +L L+ + L+++A D+E N FS+L
Sbjct: 93 TSIIFAEDISKGQVLRCDAIVDLIHGIQIVSTTRELYLEDSPLELKIQALDSEGNTFSTL 152
Query: 460 VGLQFIWKLMPESGGSTHHLAHVPLKESPLTDCGGL-CGYLDIQKKLEDSGVFADLFVVK 636
GL F W ++ ++ + +H L+ + + Y+ +K G D +V
Sbjct: 153 AGLVFDWTIVKDTEANGFSDSHNALRILTFLESTYIPPSYISEMEKAAKQG---DTILVS 209
Query: 637 GTKIGHEKVSVHLLEAPLTHIAD-EIVLTVAEAMSLEPRSPVYVLMGASFGYTLKVMRGN 813
G K G K+ + EA ++ E+ L + E + L P VY+L+G S Y ++ +R
Sbjct: 210 GMKTGSSKLKARIQEAVYKNVRPAEVRLLILENILLNPAYDVYLLVGTSIHYKVQKIRQG 269
Query: 814 VPQAVDLPSPHHRWSVLNS----------SVAQVDSLIGLTKALSLGVTTVVVEDTRV-- 957
+ +PS + + NS VA + A+ +G + +V+ +
Sbjct: 270 KITELSMPSDQYELQLQNSIPDPQGDPARPVAILTQDTSRVTAMQMGQSNLVLGHRSIRM 329
Query: 958 --AGHIQGSSINVVTPDTLILYISPWSMSGDLITESKPFPSSMHWYVVSGRQYLIQMKIF 1131
A + S+I VV L + P GD W + +G Y I +++F
Sbjct: 330 QGASRLPNSTIYVVEAGYLGFTVYP----GD------------RWVLETGHLYAITIEVF 373
Query: 1132 SGRPDAHEIYITETDDIKLYG-KDSDYWKIVSLPDELSSEYGQRNSRILNAISPGLGELT 1308
D + +D+I++ +++++++S SS+ G + + AI G ++
Sbjct: 374 ----DRSSNKVYPSDNIRIEAVLPAEFFEVLS-----SSQNGSYHH--IRAIQSGQTAIS 422
Query: 1309 STLTYFSGHQESKEVLKV----VQEIRVCEKVQFTLNSEDDTPKVL-LPWTPAVYQEMEL 1473
+TLT VL+V QE+ + + TL P +L PW P
Sbjct: 423 ATLTSVVDQDGGVHVLQVPVWNQQEVDI--HIPITL-----YPSILTFPWQPKTGAYQYT 475
Query: 1474 IVTGGCAKASSDYKWFTSDISILSVSAYGIIQAKRPGIATVKVVSTFDSQN---FDEVIV 1644
I G S ++ W +S + +V+ G++ G + V+ D QN F E+ V
Sbjct: 476 IKAHG---GSGNFSWSSSSSMVATVTVKGVMTTS--GDTGLSVIRAHDVQNPLHFGEMKV 530
Query: 1645 EVSIPSSMVMLQNFPVETVVGSHLKAAVTMKAL------NGATFSRCDAFNSLIKWKTGS 1806
V PSSM VE VG L+ +T+ T S C F+
Sbjct: 531 YVIEPSSMEFAP-CQVEARVGHTLELPLTISGFMPGGGSEVVTLSDCSHFD--------- 580
Query: 1807 ESFVIVNATSEMMMLDELRSMDSSPP-CSRASIYTASTGRTVLQATLAKEFHYFDKSLSE 1983
++V ++ + + P CS + + G T L +
Sbjct: 581 ---LVVEVENQGVFQPLPGRLPPGPEHCSGVKVKADAQGSTTLLVSYT----------HG 627
Query: 1984 SIDLKATLTIGAYLPLSVRQDSDGNHHGGYWFDKAQEETDFGVSKLYLVPGTYVDVMLLG 2163
+ L A +T+ AYLPL KA + + V L G+ +++ G
Sbjct: 628 HVHLDAKITLAAYLPL-----------------KAVDPSSVAVVTL----GSSKEMLFEG 666
Query: 2164 GPERWDDNVEFTETVKTLYEDEEDLTSRVNVHHEVDRRANMYRI--SCQKLGSYKLVFLR 2337
GP W +E ++ + + ++ S + R +R+ +CQ LG +
Sbjct: 667 GPRPW--VLEPSKFFRNVTSEDTGSISLSLLGPPASRNYQQHRVLMTCQALGEQVIALSV 724
Query: 2338 GNLLGIDHPVPAVAEALLSVHCSLPSSVVLIVDEPVNKLDVIRAASQADRAPGRLRVTPV 2517
GN + +P PAV ++ C+ PS + L+ + +LD+ Q ++ +V PV
Sbjct: 725 GNRPSLSNPFPAVEPTVVKSICAPPSRLTLMPVYALPQLDLSCPLLQQNK-----QVVPV 779
Query: 2518 TVANGQIIRVAAVGISEFGEAFSNSSTLSLRW----------ELTSCNNLAYWDDDYNSK 2667
+ ++ + A + G F N S+LS++W EL L DD K
Sbjct: 780 SSHRNPLLDLGA--YDQQGRRFDNFSSLSIQWESSRPLLASIELDQPMQLVSQDDGNGQK 837
Query: 2668 MTKSGWERFLALRNESGLCTVRATVSGIDYSFKSQYSTLLPQGSESTLTDAVRLQLVSTL 2847
K + +++ SG + AT +G S S+ P ++ ++ L LV +
Sbjct: 838 --KLHGLQTVSVHEASGTTAISATATGYQQSHLSEARVKQPHDPLVPVSASIELILVEDV 895
Query: 2848 RVTPEFNLVFFNPNAKVNLSMTGGSCLWEAVVNNSRVAEVIRPPSGLQCSQMMLSPKGLG 3027
RV+PE ++ +P +V L +T GS + N+ ++I+ ++ P G
Sbjct: 896 RVSPEEMTIYNHPGVQVELYITEGSGYF---FLNTSTQDIIKVAYQDTRGVALVHPLLPG 952
Query: 3028 TTIVTVYDIGVSPPLSALALIKVADVDWIKIASGDEISIMEGSTHSIDLLTGIDDGMTFD 3207
++ V V+D+ ++ P A A+I V+D+ + + D++ I + + +L F
Sbjct: 953 SSTVMVHDLCLAFPAPAKAIIHVSDIQELYVRVVDKVEIGKAVKAYVRVLDFYK--KPFL 1010
Query: 3208 SSQYSLMDIMVHIEDDLVEHVTVDEDSLSVGEHVATSSFKIAARRLGITTLYVSARQQSG 3387
+ ++ MD+ + ++ VT+DE ++ + AT F + +G T+L S +SG
Sbjct: 1011 AKYFTFMDLKLQAASQIITLVTLDE---ALDNYTAT--FLVHGVAIGQTSLSASVTDKSG 1065
Query: 3388 GKVLSQTIKVEVYSPPRLHPQGIFLVPGASYVLTIEGGPTMNVSVDYTTVDNEVAKIEKS 3567
+V S ++EV+ P RL P+ + L+ GA +T EGGP ++ ++ + VA + S
Sbjct: 1066 QRVSSTPQQIEVFPPFRLIPRKVTLIIGAMMQITSEGGPQPQSNILFSINNESVAAVSSS 1125
Query: 3568 GRLYATSPGNTTIYATIYGSEG-----AVICQAIGNAEVGLPATAMLVAQSDTVAVGHEM 3732
G + GN ++ + + ++ Q + EV + A + G +M
Sbjct: 1126 GLVRGLMVGNGSVLGVVQAVDAETGKVIIVSQDLVEVEVLQLQAVRIRAPITRMRTGTQM 1185
Query: 3733 PV--------SPSFPEGDLLSFYELCSAYKWTIEDEKVLIFIAS----SINVEENAGFVN 3876
PV F G+ + + W++ VL SI + F
Sbjct: 1186 PVFVTGITSNQSPFSFGNAVPGL----TFHWSVTKRDVLDLRGRHHEVSIRLPPQYNFAM 1241
Query: 3877 VVQGRSAGKTRVTIAF-SCDFVSPGLYSESRTYEASMILSVVPDLPLSLGAPMTWVLPPF 4053
V GR G+T + + + D + L+ + + + V L L L P
Sbjct: 1242 NVYGRVKGRTGLRVVVKALDPTAGQLHGLGKELSDEIQIQVFEKLRL---------LNPE 1292
Query: 4054 YTSSGLLPSSSEPQKHRDGQSHRGNIVYSIL----KDCSSRADFERDTISINGGSVKTTD 4221
+ +L S + K + + + Y +L K D + +S +G V T +
Sbjct: 1293 IEAEQILMSPNSFIKLQTNRDGAAILSYRVLDGPEKAPIVHTDEKGFLVSGSGIGVSTLE 1352
Query: 4222 SNNVACIQAKDRTSGRIEIAACVRVAEVAQIRMKSEGIPFH------VIDLAVGGELELP 4383
+ A++ I V+V+ V+ +R+ + H + L +G +
Sbjct: 1353 ------VIAQEPFGTNQTILVAVKVSPVSYLRISMSPV-LHTQHKEALTALPLGMTVTFI 1405
Query: 4384 INYYDTLGIPFLEAHGVTTYNVETNHRDVVFIKTVNDQPSAYIKGIKHGKALIRVSIGDN 4563
++++D+ G F AH + N TN D V I + I+ + G L+ V ++
Sbjct: 1406 VHFHDSSGDIF-HAHN-SVLNFATNRDDFVQIGKGATNNTCIIRTVSVGLTLLHVWDVEH 1463
Query: 4564 LRKSDYVLVSVGAHIFPQ-NPVIHTGNLLNF-SITGADNEVTGQWFTSNRSVISVNVASG 4737
L SD+V + V I P+ + + G++L S+ + V+G W +S V+ V+ +G
Sbjct: 1464 LGLSDFVPLPVLQAITPELSGAVVVGDILCLASVLTSLGGVSGTWSSSASHVLYVDPKTG 1523
Query: 4738 QAKAISQGS 4764
A A GS
Sbjct: 1524 VAIARDAGS 1532
>gb|AAF21969.1|AF113751_1 nuclear pore membrane glycoprotein POM210 [Mus
musculus]|gi|9055314|ref|NP_061285.1| nucleoporin 210;
nuclear pore membrane glycoprotein 210; nuclear pore
membrane protein 210 [Mus musculus]
Length = 1886
Score = 271 bits (694), Expect = 7e-71
Identities = 362/1627 (22%), Positives = 670/1627 (40%), Gaps = 73/1627 (4%)
Frame = +1
Query: 103 ILLPPKMKNPVEYRLQGSDGCFKWSWDHHDILSVTPEFNSSSHCSTSARLRSISPYSGRK 282
+LLP V + L+ S+GC++WS ++ S+ P +S CS A +++ R
Sbjct: 33 VLLPGTRATRVNFTLEASEGCYRWSSTRPEVASIEPLGSSEQQCSQKAVVQARLTQPARL 92
Query: 283 ETAVYATDIQTGMVIRCKVFIDNFSRIQIFHNSIKLDLDGLSM-LRVRAFDNEDNEFSSL 459
+ ++A DI TG V+ C +D IQI + +L L+ + L+++A D+E N FS+L
Sbjct: 93 TSIIFAEDITTGQVVACDAIVDLIHGIQIVSTTRELYLEDSPLELKIQALDSEGNTFSTL 152
Query: 460 VGLQFIWKLMPESGGSTHHLAHVPLKESPLTDCGGL-CGYLDIQKKLEDSGVFADLFVVK 636
GL F W ++ ++ + +H L+ + + Y+ +K G D +V
Sbjct: 153 AGLVFDWTIVKDTEANGFSDSHNALRILTFLESTYIPPSYISEMEKAAKQG---DTILVS 209
Query: 637 GTKIGHEKVSVHLLEAPLTHIAD-EIVLTVAEAMSLEPRSPVYVLMGASFGYTLKVMRGN 813
G K G K+ + EA ++ E+ L + E + L P VY+L+G S Y ++ +R
Sbjct: 210 GMKTGSSKLKARIQEAVYKNVRPAEVRLLILENILLNPAYDVYLLVGTSIHYKVQKIRQG 269
Query: 814 VPQAVDLPSPHHRWSVLNS----------SVAQVDSLIGLTKALSLGVTTVVVEDTRV-- 957
+ +PS + + NS VA + A+ +G + +V+ +
Sbjct: 270 KITELSMPSDQYELQLQNSIPDPQGDPARPVAILTQDTSRVTAMQMGQSNLVLGHRSIRM 329
Query: 958 --AGHIQGSSINVVTPDTLILYISPWSMSGDLITESKPFPSSMHWYVVSGRQYLIQMKIF 1131
A + S+I VV L + P GD W + +G Y I +++F
Sbjct: 330 QGASRLPNSTIYVVEAGYLGFTVYP----GD------------RWVLETGHLYAITIEVF 373
Query: 1132 SGRPDAHEIYITETDDIKLYG-KDSDYWKIVSLPDELSSEYGQRNSRILNAISPGLGELT 1308
D + +D+I++ +++++++S SS+ G + + AI G ++
Sbjct: 374 ----DRSSNKVYPSDNIRIEAVLPAEFFEVLS-----SSQNGSYHH--IRAIQSGQTSIS 422
Query: 1309 STLTYFSGHQESKEVLKV----VQEIRVCEKVQFTLNSEDDTPKVL-LPWTPAVYQEMEL 1473
+TLT VL+V QE+ + + TL P +L PW P
Sbjct: 423 ATLTSVVDQDGGVHVLQVPVWNQQEVDI--HIPITL-----YPSILTFPWQPKTGAYQYT 475
Query: 1474 IVTGGCAKASSDYKWFTSDISILSVSAYGIIQAK-RPGIATVKVVSTFDSQNFDEVIVEV 1650
I G S ++ W +S + +V+ G++ G+ ++ + +F E+ V V
Sbjct: 476 IKAHG---GSGNFSWSSSSSMVATVTVKGVMTTSGDTGLREIRAQHVQNPLHFGEMKVYV 532
Query: 1651 SIPSSMVMLQNFPVETVVGSHLKAAVTMKAL------NGATFSRCDAFNSLIKWKTGSES 1812
PSSM VE VG L+ +T+ T S C F+
Sbjct: 533 IEPSSMEFAP-CQVEARVGHTLELPLTISGFMPGGGSEVVTLSDCSHFD----------- 580
Query: 1813 FVIVNATSEMMMLDELRSMDSSPP-CSRASIYTASTGRTVLQATLAKEFHYFDKSLSESI 1989
++V ++ + + P CS + + G T L + +
Sbjct: 581 -LVVEVENQGVFQPLPGKLPPGPEHCSGVKVKADAQGSTTLLVSYT----------HGHV 629
Query: 1990 DLKATLTIGAYLPLSVRQDSDGNHHGGYWFDKAQEETDFGVSKLYLVPGTYVDVMLLGGP 2169
L A +T+ AYLPL KA + + V L G+ +++ GGP
Sbjct: 630 HLDAKITLAAYLPL-----------------KAVDPSSVAVVTL----GSSKEMLFEGGP 668
Query: 2170 ERWDDNVEFTETVKTLYEDEEDLTSRVNVHHEVDRRANMYRI--SCQKLGSYKLVFLRGN 2343
W +E ++ + + ++ S + R +R+ +CQ LG + GN
Sbjct: 669 RPW--VLEPSKFFRNVTSEDTGSISLSLLGPPASRNYQQHRVLMTCQALGEQVIALSVGN 726
Query: 2344 LLGIDHPVPAVAEALLSVHCSLPSSVVLIVDEPVNKLDVIRAASQADRAPGRLRVTPVTV 2523
+ +P PAV ++ C+ PS + L+ + +LD+ Q ++ +V PV+
Sbjct: 727 RPSLSNPFPAVEPTVVKSICAPPSRLTLMPVYALPQLDLSCPLLQQNK-----QVVPVSS 781
Query: 2524 ANGQIIRVAAVGISEFGEAFSNSSTLSLRW----------ELTSCNNLAYWDDDYNSKMT 2673
++ + A + G F N S+LS++W EL L DD K
Sbjct: 782 HRNPLLDLGA--YDQQGRRFDNFSSLSIQWESFPRLLASIELDQPMQLVSQDDGNGQK-- 837
Query: 2674 KSGWERFLALRNESGLCTVRATVSGIDYSFKSQYSTLLPQGSESTLTDAVRLQLVSTLRV 2853
K + +++ SG + AT +G S S+ P ++ ++ L LV +RV
Sbjct: 838 KLHGLQTVSVHEASGTTAISATATGYQQSHLSEARVKQPHDPLVPVSASIELILVEDVRV 897
Query: 2854 TPEFNLVFFNPNAKVNLSMTGGSCLWEAVVNNSRVAEVIRPPSGLQCSQMMLSPKGLGTT 3033
+PE ++ +P +V L +T GS + N+ ++I+ ++ P G++
Sbjct: 898 SPEEMTIYNHPGVQVELYITEGSGYF---FLNTSTQDIIKVAYQDTRGVALVHPLLPGSS 954
Query: 3034 IVTVYDIGVSPPLSALALIKVADVDWIKIASGDEISIMEGSTHSIDLLTGIDDGMTFDSS 3213
V V+D+ ++ P A A+I+++D+ + + D++ I + + +L F +
Sbjct: 955 TVMVHDLCLAFPAPAKAIIQLSDIQELYVRVVDKVEIGKAVKAYVRVLDFYK--KPFLAK 1012
Query: 3214 QYSLMDIMVHIEDDLVEHVTVDEDSLSVGEHVATSSFKIAARRLGITTLYVSARQQSGGK 3393
++ MD+ ++ VT+DE ++ + AT F + +G T+L S +SG +
Sbjct: 1013 YFTFMDLNWQAASQIITLVTLDE---ALDNYTAT--FLVHGCAIGQTSLSASVTDKSGQR 1067
Query: 3394 VLSQTIKVEVYSPPRLHPQGIFLVPGASYVLTIEGGPTMNVSVDYTTVDNEVAKIEKSGR 3573
V S ++EV+ P RL P+ + L+ GA +T EGGP ++ ++ + VA + SG
Sbjct: 1068 VSSTPQQIEVFPPFRLIPRKVTLIIGAMMQITSEGGPQPQSNILFSINNESVAAVSSSGL 1127
Query: 3574 LYATSPGNTTIYATIYGSEG-----AVICQAIGNAEVGLPATAMLVAQSDTVAVGHEMPV 3738
+ GN ++ + + ++ Q + EV + A + G +MPV
Sbjct: 1128 VRGLMVGNGSVLGVVQAVDAETGKVIIVSQDLVEVEVLQLQAVRIRAPITRMRTGTQMPV 1187
Query: 3739 --------SPSFPEGDLLSFYELCSAYKWTIEDEKVLIFIAS----SINVEENAGFVNVV 3882
F G+ + + W++ VL SI + F V
Sbjct: 1188 FVTGITSNQSPFSFGNAVPGL----TFHWSVTKRDVLDLRGRHHEVSIRLPPQYNFAMNV 1243
Query: 3883 QGRSAGKTRVTIAF-SCDFVSPGLYSESRTYEASMILSVVPDLPLSLGAPMTWVLPPFYT 4059
GR G+T + + + D + L+ + + + V L L L P
Sbjct: 1244 YGRVKGRTGLRVLVKALDPTAGQLHGLGKELSDEIQIQVFEKLRL---------LNPEIE 1294
Query: 4060 SSGLLPSSSEPQKHRDGQSHRGNIVYSIL----KDCSSRADFERDTISINGGSVKTTDSN 4227
+ +L S + K + + + Y +L K D + +S +G V T +
Sbjct: 1295 AEQILMSPNSFIKLQTNRDGAAILSYRVLDGPEKAPIVHTDEKGFLVSGSGIGVSTLE-- 1352
Query: 4228 NVACIQAKDRTSGRIEIAACVRVAEVAQIRMKSEGIPFH------VIDLAVGGELELPIN 4389
+ A++ I V+V+ V+ +R+ + H + L +G + ++
Sbjct: 1353 ----VIAQEPFGTNQTILVAVKVSPVSYLRISMSPV-LHTQHKEALTALPLGMTVTFIVH 1407
Query: 4390 YYDTLGIPFLEAHGVTTYNVETNHRDVVFIKTVNDQPSAYIKGIKHGKALIRVSIGDNLR 4569
++D+ G F AH + N TN D V I + I+ + G L+ V ++L
Sbjct: 1408 FHDSSGDIF-HAHN-SVLNFATNRDDFVQIGKGATNNTCIIRTVSVGLTLLHVWDVEHLG 1465
Query: 4570 KSDYVLVSVGAHIFPQ-NPVIHTGNLLNF-SITGADNEVTGQWFTSNRSVISVNVASGQA 4743
SD+V + V I P+ + + G++L S+ + V+G W +S V+ V+ +G A
Sbjct: 1466 LSDFVPLPVLQAITPELSGAVVVGDILCLASVLTSLGGVSGTWSSSASHVLYVDPKTGVA 1525
Query: 4744 KAISQGS 4764
A GS
Sbjct: 1526 IARDAGS 1532
>ref|NP_079199.2| nucleoporin 210; nuclear pore membrane glycoprotein 210; gp210 [Homo
sapiens]
Length = 1887
Score = 270 bits (691), Expect = 1e-70
Identities = 364/1621 (22%), Positives = 671/1621 (40%), Gaps = 67/1621 (4%)
Frame = +1
Query: 103 ILLPPKMKNPVEYRLQGSDGCFKWSWDHHDILSVTPEFNSSSHCSTSARLRSISPYSGRK 282
+LLP V + L+ S+GC++W ++ S+ P CS A +++ R
Sbjct: 33 VLLPFTRATRVNFTLEASEGCYRWLSTRPEVASIEPLGLDEQQCSQKAVVQARLTQPARL 92
Query: 283 ETAVYATDIQTGMVIRCKVFIDNFSRIQIFHNSIKLDLDGLSM-LRVRAFDNEDNEFSSL 459
+ ++A DI TG V+RC +D IQI + +L L+ + L+++A D+E N FS+L
Sbjct: 93 TSIIFAEDITTGQVLRCDAIVDLIHDIQIVSTTRELYLEDSPLELKIQALDSEGNTFSTL 152
Query: 460 VGLQFIWKLMPESGGSTHHLAHVPLKESPLTDCGGL-CGYLDIQKKLEDSGVFADLFVVK 636
GL F W ++ +S +H L+ + + Y+ +K G D +V
Sbjct: 153 AGLVFEWTIVKDSEADRFSDSHNALRILTFLESTYIPPSYISEMEKAAKQG---DTILVS 209
Query: 637 GTKIGHEKVSVHLLEAPLTHIAD-EIVLTVAEAMSLEPRSPVYVLMGASFGYTLKVMRGN 813
G K G K+ + EA ++ E+ L + E + L P VY+++G S Y ++ +R
Sbjct: 210 GMKTGSSKLKARIQEAVYKNVRPAEVRLLILENILLNPAYDVYLMVGTSIHYKVQKIRQG 269
Query: 814 VPQAVDLPSPHHRWSVLNS----------SVAQVDSLIGLTKALSLGVTTVVVEDTRV-- 957
+ +PS + + NS VA + + AL LG +++V+ +
Sbjct: 270 KITELSMPSDQYELQLQNSIPGPEGDPARPVAVLAQDTSMVTALQLGQSSLVLGHRSIRM 329
Query: 958 --AGHIQGSSINVVTPDTLILYISPWSMSGDLITESKPFPSSMHWYVVSGRQYLIQMKIF 1131
A + S+I VV P L + P GD W + +GR Y I +++F
Sbjct: 330 QGASRLPNSTIYVVEPGYLGFTVHP----GD------------RWVLETGRLYEITIEVF 373
Query: 1132 SGRPDAHEIYITETDDIKLYGKDSDYWKIVSLPDELSSEYGQRNSRILNAISPGLGELTS 1311
++++Y+++ I+ +++++++S SS+ G + + A+ G + +
Sbjct: 374 D--KFSNKVYVSDNIRIETV-LPAEFFEVLS-----SSQNGSYHR--IRALKRGQTAIDA 423
Query: 1312 TLTYFSGHQESKEVLKV----VQEIRVCEKVQFTLNSEDDTPKVL-LPWTPAVYQEMELI 1476
LT +L+V QE+ + + TL P +L PW P I
Sbjct: 424 ALTSVVDQDGGVHILQVPVWNQQEVEI--HIPITL-----YPSILTFPWQPKTGAYQYTI 476
Query: 1477 VTGGCAKASSDYKWFTSDISILSVSAYGIIQAKRP-GIATVKVVSTFDSQNFDEVIVEVS 1653
G S ++ W +S + +V+ G++ G + ++ + +F E+ V V
Sbjct: 477 RAHG---GSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVI 533
Query: 1654 IPSSMVMLQNFPVETVVGSHLKAAVTMKAL--NGA----TFSRCDAFNSLIKWKTGSESF 1815
P SM VE VG L+ + + L GA T S C F+ ++ +
Sbjct: 534 EPHSMEFAP-CQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQ 592
Query: 1816 VIVNATSEMMMLDELRSMDSSPPCSRASIYTASTGRTVLQATLAKEFHYFDKSLSESIDL 1995
+ R S CS + + G T L + + H + L
Sbjct: 593 PLPG-----------RLPPGSEHCSGIRVKAEAQGSTTLLVSY-RHGH---------VHL 631
Query: 1996 KATLTIGAYLPLSVRQDSDGNHHGGYWFDKAQEETDFGVSKLYLVPGTYVDVMLLGGPER 2175
A +TI AYLPL KA + + + L G+ +++ GGP
Sbjct: 632 SAKITIAAYLPL-----------------KAVDPSSVALVTL----GSSKEMLFEGGPRP 670
Query: 2176 WD-DNVEFTETVKTLYEDEEDL-TSRVNVHHEVDRRANMYRISCQKLGSYKLVFLRGNLL 2349
W + +F + V ED + + + H + + + ++CQ LG + GN
Sbjct: 671 WILEPSKFFQNVTA--EDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVIALSVGNKP 728
Query: 2350 GIDHPVPAVAEALLSVHCSLPSSVVLIVDEPVNKLDVIRAASQADRAPGRLRVTPVTVAN 2529
+ +P PAV A++ C+ PS + L +LD+ Q ++ +V PV+
Sbjct: 729 SLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNK-----QVVPVSSHR 783
Query: 2530 GQIIRVAAVGISEFGEAFSNSSTLSLRWELTS----------CNNLAYWDDDYNSKMTKS 2679
+ +AA + G F N S+LS++WE T L DD+ K K
Sbjct: 784 NPRLDLAA--YDQEGRRFDNFSSLSIQWESTRPVLASIEPELPMQLVSQDDESGQK--KL 839
Query: 2680 GWERFLALRNESGLCTVRATVSGIDYSFKSQYSTLLPQGSESTLTDAVRLQLVSTLRVTP 2859
+ + + SG + AT +G S S T P L+ ++ L LV +RV+P
Sbjct: 840 HGLQAILVHEASGTTAITATATGYQESHLSSARTKQPHDPLVPLSASIELILVEDVRVSP 899
Query: 2860 EFNLVFFNPNAKVNLSMTGGSCLWEAVVNNSRVAEVIRPPSGLQCSQMMLSPKGLGTTIV 3039
E ++ +P + L + GS + N+ A+V++ M+ P G++ +
Sbjct: 900 EEVTIYNHPGIQAELRIREGSGYF---FLNTSTADVVKVAYQEARGVAMVHPLLPGSSTI 956
Query: 3040 TVYDIGVSPPLSALALIKVADVDWIKIASGDEISI---MEGSTHSIDLLTGIDDGMTFDS 3210
++D+ + P A A++ V+D+ + I D++ I ++ +DL F +
Sbjct: 957 MIHDLCLVFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDL-----HKKPFLA 1011
Query: 3211 SQYSLMDIMVHIEDDLVEHVTVDEDSLSVGEHVATSSFKIAARRLGITTLYVSARQQSGG 3390
+ MD+ + ++ V +DE + T +F I +G T+L S ++G
Sbjct: 1012 KYFPFMDLKLRAASPIITLVALDEALDNY-----TITFLIRGVAIGQTSLTASVTNKAGQ 1066
Query: 3391 KVLSQTIKVEVYSPPRLHPQGIFLVPGASYVLTIEGGPTMNVSVDYTTVDNEVAKIEKSG 3570
++ S ++EV+ P RL P+ + L+ GA+ +T EGGP ++ ++ + VA + +G
Sbjct: 1067 RINSAPQQIEVFPPFRLMPRKVTLLIGATMQVTSEGGPQPQSNILFSISNESVALVSAAG 1126
Query: 3571 RLYATSPGNTTIYATIYGSEG-----AVICQAIGNAEVGLPATAMLVAQSDTVAVGHEMP 3735
+ + GN T+ + + +I Q + EV L + A + G +MP
Sbjct: 1127 LVQGLAIGNGTVSGLVQAVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMP 1186
Query: 3736 --VSPSFPEGDLLSFYELCS--AYKWTIEDEKVLIFIA----SSINVEENAGFVNVVQGR 3891
V+ + SF + W++ VL +SI + F V GR
Sbjct: 1187 IYVTGITNHQNPFSFGNAVPGLTFHWSVTKRDVLDLRGRHHEASIRLPSQYNFAMNVLGR 1246
Query: 3892 SAGKTRVTIAF-SCDFVSPGLYSESRTYEASMILSVVPDLPLSLGAPMTWVLPPFYTSSG 4068
G+T + + + D S LY +R + + V L L L P +
Sbjct: 1247 VKGRTGLRVVVKAVDPTSGQLYGLARELSDEIQVQVFEKLQL---------LNPEIEAEQ 1297
Query: 4069 LLPSSSEPQKHRDGQSHRGNIVYSILKDCSSRADFERDTIS-INGGSVKTTDSNNVACIQ 4245
+L S + K + + ++ Y +L D + GS+ T + V
Sbjct: 1298 ILMSPNSYIKLQTNRDGAASLSYRVLDGPEKVPVVHVDEKGFLASGSMIGTSTIEVI--- 1354
Query: 4246 AKDRTSGRIEIAACVRVAEVAQIRMKSEGIPFH------VIDLAVGGELELPINYYDTLG 4407
A++ I V+V+ V+ +R+ + H ++ + +G + ++++D G
Sbjct: 1355 AQEPFGANQTIIVAVKVSPVSYLRVSMSPV-LHTQNKEALVAVPLGMTVTFTVHFHDNSG 1413
Query: 4408 IPFLEAHGVTTYNVETNHRDVVFIKTVNDQPSAYIKGIKHGKALIRVSIGDNLRKSDYVL 4587
F AH + N TN D V I + ++ + G L+RV ++ SD++
Sbjct: 1414 DVF-HAHS-SVLNFATNRDDFVQIGKGPTNNTCVVRTVSVGLTLLRVWDAEHPGLSDFMP 1471
Query: 4588 VSVGAHIFPQ-NPVIHTGNLLNFSITGADNE-VTGQWFTSNRSVISVNVASGQAKAISQG 4761
+ V I P+ + + G++L + E ++G W +S S++ ++ +G A A + G
Sbjct: 1472 LPVLQAISPELSGAMVVGDVLCLATVLTSLEGLSGTWSSSANSILHIDPKTGVAVARAVG 1531
Query: 4762 S 4764
S
Sbjct: 1532 S 1532
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 138
effective length of database: 245,524,063
effective search space used: 437278356203
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)