BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g32650.f
(75 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174542.1| unknown protein; protein id: At1g32650.1 [... 54 7e-07
pir||S33706 DNA-damage repair protein DRT111 precursor - Ar... 39 0.017
gb|AAM14338.1| putative DNA damage repair protein [Arabidop... 39 0.017
dbj|BAC00713.1| putative DNA damage repair protein [Oryza s... 33 1.2
>ref|NP_174542.1| unknown protein; protein id: At1g32650.1 [Arabidopsis thaliana]
Length = 24
Score = 53.9 bits (128), Expect = 7e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 1 MGNSLEEGPCMQHSMMRRYSARTS 72
MGNSLEEGPCMQHSMMRRYSARTS
Sbjct: 1 MGNSLEEGPCMQHSMMRRYSARTS 24
>pir||S33706 DNA-damage repair protein DRT111 precursor - Arabidopsis
thaliana|gi|166694|gb|AAA73382.1| [Arabidopsis thaliana
recombination and DNA-damage resistance protein (DRT111)
mRNA, complete cds.], gene product
Length = 383
Score = 39.3 bits (90), Expect = 0.017
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +3
Query: 3 GQ*FGGRTVHATLYDEKIFSKNEL 74
G+ FGGRTV AT YDE+ FSKNEL
Sbjct: 350 GRYFGGRTVRATFYDEEKFSKNEL 373
>gb|AAM14338.1| putative DNA damage repair protein [Arabidopsis
thaliana]|gi|15028005|gb|AAK76533.1| putative DNA damage
repair protein [Arabidopsis
thaliana]|gi|15220757|ref|NP_174336.1| DNA damage repair
protein, putative; protein id: At1g30480.1, supported by
cDNA: gi_15028004, supported by cDNA: gi_166693,
supported by cDNA: gi_20259640 [Arabidopsis
thaliana]|gi|25372792|pir||G86429 hypothetical protein
F26G16.10 - Arabidopsis
thaliana|gi|20141383|sp|P42698|D111_ARATH
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor|gi|6634771|gb|AAF19751.1|AC009917_10 Strong
similarity to gi|1169200 DNA-Damage-Repair/Toleration
protein (DRT111) precurser, and contains a G-patch
PF|01585 domain and RNA recognition PF|00076 motif. EST
gb|AA395591 comes from this gene. [Arabidopsis thaliana]
Length = 387
Score = 39.3 bits (90), Expect = 0.017
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +3
Query: 3 GQ*FGGRTVHATLYDEKIFSKNEL 74
G+ FGGRTV AT YDE+ FSKNEL
Sbjct: 354 GRYFGGRTVRATFYDEEKFSKNEL 377
>dbj|BAC00713.1| putative DNA damage repair protein [Oryza sativa (japonica
cultivar-group)]|gi|20521490|dbj|BAB91997.1| putative
DNA damage repair protein [Oryza sativa (japonica
cultivar-group)]
Length = 368
Score = 33.1 bits (74), Expect = 1.2
Identities = 14/24 (58%), Positives = 18/24 (74%)
Frame = +3
Query: 3 GQ*FGGRTVHATLYDEKIFSKNEL 74
G+ FGGR V AT +DE+ F KN+L
Sbjct: 334 GRFFGGRVVRATFFDEERFGKNQL 357
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 0
effective length of database: 431,508,457
effective search space used: 10356202968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)