BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g31980.f
(168 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA10571.1| ebiP1450 [Anopheles gambiae str. PEST] 30 7.3
dbj|BAB92974.1| sheath polysaccharide-degrading enzyme [Pae... 30 9.5
>gb|EAA10571.1| ebiP1450 [Anopheles gambiae str. PEST]
Length = 2520
Score = 30.4 bits (67), Expect = 7.3
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 4 ERNRRRNADNNTVVDQGGVFFDGCD-TDEAFGPSSRDVPFQHDSVKSKPN 150
E +R+R +NN + FDG D +DE G R P Q+ + K PN
Sbjct: 1908 EGDRQRQKENNASSAVPSMVFDGYDDSDENGGAKKRTNPSQNGTSKGDPN 1957
>dbj|BAB92974.1| sheath polysaccharide-degrading enzyme [Paenibacillus sp. JCM
11186]
Length = 738
Score = 30.0 bits (66), Expect = 9.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 25 ADNNTVVDQGGVFFDGCDTDEAFGPSSRDVPFQHDSVKSKPNLY 156
+DN V+ GG F G +D A G + + ++ VK+ NLY
Sbjct: 118 SDNRAVIKIGGARFSGSTSDPANGVLPKYIVIENLEVKNGKNLY 161
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 31
effective length of database: 389,729,354
effective search space used: 9353504496
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)