BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At5g21000.f
         (456 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_213726.1|  cysteinyl-tRNA synthetase [Aquifex aeolicu...    36   0.15 
pir||S77387  nitrate transport protein C-2 - Synechocystis s...    31   6.5  

>ref|NP_213726.1| cysteinyl-tRNA synthetase [Aquifex
           aeolicus]|gi|2983551|gb|AAC07125.1| cysteinyl-tRNA
           synthetase [Aquifex aeolicus]|gi|7437719|pir||H70391
           cysteine-tRNA ligase (EC 6.1.1.16) - Aquifex
           aeolicus|gi|6831683|sp|O67163|SYC_AQUAE Cysteinyl-tRNA
           synthetase (Cysteine--tRNA ligase) (CysRS)
          Length = 495

 Score = 36.2 bits (82), Expect = 0.15
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +1

Query: 184 DEEEGFGRSLIVIDITTDYLPHLKAVALFIVSLLKFEKKLKSAAEKQCSEI--IASVY-G 354
           D   G GRSLIV D+   +L HL     F+ +    + K+ + A+++C++   IA  Y  
Sbjct: 36  DSHVGHGRSLIVFDVFRRFLEHLGYQVKFVRNFTDVDDKIINRAKQECTDFMTIADRYIA 95

Query: 355 EIQLELENDR 384
              +++EN R
Sbjct: 96  RYYVDMENIR 105



>pir||S77387 nitrate transport protein C-2 - Synechocystis sp. (strain PCC
           6803)|gi|2492543|sp|P73450|NRTC_SYNY3 Nitrate transport
           ATP-binding protein nrtC|gi|16330082|ref|NP_440810.1|
           nitrate transport protein; NrtC [Synechocystis sp. PCC
           6803]|gi|1652569|dbj|BAA17490.1| nitrate transport
           protein; NrtC [Synechocystis sp. PCC 6803]
          Length = 670

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -2

Query: 236 SVVISITIRDLPKPSSSSIWKD*VLYIPLEINEAGLNTRRL---MPLRLAVAASLSSRPM 66
           ++ ++  +RDLPKP    I  D +  + L+   A      L   M  R+A+A +LS+RP 
Sbjct: 100 ALAVNRVLRDLPKPEQEKIIDDNIALVGLQ-RAAHKRPGELSGGMKQRVAIARALSTRPK 158

Query: 65  SFSLD 51
              LD
Sbjct: 159 VLLLD 163



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 112
effective length of database: 280,564,601
effective search space used: 10942019439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)