BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At4g16010.f
(5829 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B71426 hypothetical protein - Arabidopsis thaliana|gi|... 3842 0.0
pir||C96578 hypothetical protein T18A20.5 [imported] - Arab... 1183 0.0
ref|NP_178712.1| putative retroelement pol polyprotein; pro... 1180 0.0
gb|AAC61290.1| putative retroelement pol polyprotein [Arabi... 943 0.0
emb|CAB81478.1| putative protein [Arabidopsis thaliana]|gi|... 938 0.0
>pir||B71426 hypothetical protein - Arabidopsis
thaliana|gi|7268350|emb|CAB78643.1| reverse transcriptase
like protein [Arabidopsis
thaliana]|gi|2244959|emb|CAB10380.1| reverse
transcriptase like protein [Arabidopsis
thaliana]|gi|15234774|ref|NP_193336.1| reverse
transcriptase like protein; protein id: At4g16010.1
[Arabidopsis thaliana]
Length = 1942
Score = 3842 bits (9963), Expect = 0.0
Identities = 1875/1942 (96%), Positives = 1875/1942 (96%)
Frame = +1
Query: 1 MVSELMERRSMELYTVPQLNISNCVTVTLTQQNYILWKSQFESFLSGQGLLGFVTGSISA 180
MVSELMERRSMELYTVPQLNISNCVTVTLTQQNYILWKSQFESFLSGQGLLGFVTGSISA
Sbjct: 1 MVSELMERRSMELYTVPQLNISNCVTVTLTQQNYILWKSQFESFLSGQGLLGFVTGSISA 60
Query: 181 PSPTIPVPDINGVTTDRPNPEFDVWFKTDKVVKSWLLGSFAEDILSVVVNYVTAHELQRR 360
PSPTIPVPDINGVTTDRPNPEFDVWFKTDKVVKSWLLGSFAEDILSVVVNYVTAHELQRR
Sbjct: 61 PSPTIPVPDINGVTTDRPNPEFDVWFKTDKVVKSWLLGSFAEDILSVVVNYVTAHELQRR 120
Query: 361 LQTLEKKDKPMQVYLKELQTIYEQLASVGSPVPEKMKIFAALNGLGREYEPIKTSIEGSI 540
LQTLEKKDKPMQVYLKELQTIYEQLASVGSPVPEKMKIFAALNGLGREYEPIKTSIEGSI
Sbjct: 121 LQTLEKKDKPMQVYLKELQTIYEQLASVGSPVPEKMKIFAALNGLGREYEPIKTSIEGSI 180
Query: 541 DIPPTPKLDEIMPRLNGYDDRLQAYAANSDVSPHLAFNTVQANSVFYTNXXXXXXXXXXX 720
DIPPTPKLDEIMPRLNGYDDRLQAYAANSDVSPHLAFNTVQANSVFYTN
Sbjct: 181 DIPPTPKLDEIMPRLNGYDDRLQAYAANSDVSPHLAFNTVQANSVFYTNRGRGQGNRRFG 240
Query: 721 XXXXQERPTCQICGKHGHHALNCWHRFDNSYQLDVLPQALPATQITDITDHSGSEWVTDS 900
QERPTCQICGKHGHHALNCWHRFDNSYQLDVLPQALPATQITDITDHSGSEWVTDS
Sbjct: 241 GSRGQERPTCQICGKHGHHALNCWHRFDNSYQLDVLPQALPATQITDITDHSGSEWVTDS 300
Query: 901 AATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLPXXXXXXXXXXXXXVTKDYPCIFEFDC 1080
AATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLP VTKDYPCIFEFDC
Sbjct: 301 AATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLPITHTGSTSIGSTSVTKDYPCIFEFDC 360
Query: 1081 DEVRVRDKETKKLLLQGSNRDGLYVLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQ 1260
DEVRVRDKETKKLLLQGSNRDGLYVLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQ
Sbjct: 361 DEVRVRDKETKKLLLQGSNRDGLYVLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQ 420
Query: 1261 QLSSTKSILINKHSKAICEACQSERIHCDLWGPSPVMSVQGFRYYVIFIDNYSRYCWFYP 1440
QLSSTKSILINKHSKAICEACQSERIHCDLWGPSPVMSVQGFRYYVIFIDNYSRYCWFYP
Sbjct: 421 QLSSTKSILINKHSKAICEACQSERIHCDLWGPSPVMSVQGFRYYVIFIDNYSRYCWFYP 480
Query: 1441 LKLKSDFYTIFAKFQALVQNQLQSKISIFQCHGGGEFTSKVPQKHWVEAFYTTNFLSNLL 1620
LKLKSDFYTIFAKFQALVQNQLQSKISIFQCHGGGEFTSKVPQKHWVEAFYTTNFLSNLL
Sbjct: 481 LKLKSDFYTIFAKFQALVQNQLQSKISIFQCHGGGEFTSKVPQKHWVEAFYTTNFLSNLL 540
Query: 1621 PHTALTDAKSPFELLNKKKPDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVFLGYNEKY 1800
PHTALTDAKSPFELLNKKKPDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVFLGYNEKY
Sbjct: 541 PHTALTDAKSPFELLNKKKPDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVFLGYNEKY 600
Query: 1801 KGYRCLLPTTGRVYISRHVIFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSFMPQXXXXXX 1980
KGYRCLLPTTGRVYISRHVIFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSFMPQ
Sbjct: 601 KGYRCLLPTTGRVYISRHVIFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSFMPQTTASST 660
Query: 1981 XXXXXXXPFNAAEIQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEESSECTES 2160
PFNAAEIQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEESSECTES
Sbjct: 661 ASATATSPFNAAEIQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEESSECTES 720
Query: 2161 INLLPIGNSSSSLANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQSTHP 2340
INLLPIGNSSSSLANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQSTHP
Sbjct: 721 INLLPIGNSSSSLANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQSTHP 780
Query: 2341 MITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTWSLV 2520
MITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTWSLV
Sbjct: 781 MITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTWSLV 840
Query: 2521 PYTSDMNVLGSKWVFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRM 2700
PYTSDMNVLGSKWVFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRM
Sbjct: 841 PYTSDMNVLGSKWVFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRM 900
Query: 2701 VLHVATVMDWEVKQMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQA 2880
VLHVATVMDWEVKQMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQA
Sbjct: 901 VLHVATVMDWEVKQMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQA 960
Query: 2881 PRAWFDKFSNYLLEFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTENEEAYGNCKLC 3060
PRAWFDKFSNYLLEFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTENEEAYGNCKLC
Sbjct: 961 PRAWFDKFSNYLLEFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTENEEAYGNCKLC 1020
Query: 3061 RGNLPKIYYYCLICDFSIDLICAKKEVMEIIEGPKAHEHPLFLLPKMTMFTCHLCGLQDD 3240
RGNLPKIYYYCLICDFSIDLICAKKEVMEIIEGPKAHEHPLFLLPKMTMFTCHLCGLQDD
Sbjct: 1021 RGNLPKIYYYCLICDFSIDLICAKKEVMEIIEGPKAHEHPLFLLPKMTMFTCHLCGLQDD 1080
Query: 3241 RFPYACNLCNLSFHKDCAESTPEMKYSCHPKHILKRLTRVPSVDINCAKNPLPSTIVHLK 3420
RFPYACNLCNLSFHKDCAESTPEMKYSCHPKHILKRLTRVPSVDINCAKNPLPSTIVHLK
Sbjct: 1081 RFPYACNLCNLSFHKDCAESTPEMKYSCHPKHILKRLTRVPSVDINCAKNPLPSTIVHLK 1140
Query: 3421 AHEHLLTLMPQRNFVCDACGMDDDPNPYIVLYIKIVPQALPATQITDITDHSGSEWVTDS 3600
AHEHLLTLMPQRNFVCDACGMDDDPNPYIVLYIKIVPQALPATQITDITDHSGSEWVTDS
Sbjct: 1141 AHEHLLTLMPQRNFVCDACGMDDDPNPYIVLYIKIVPQALPATQITDITDHSGSEWVTDS 1200
Query: 3601 AATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLPXXXXXXXXXXXXXVTKDYPCIFEFDC 3780
AATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLP VTKDYPCIFEFDC
Sbjct: 1201 AATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLPITHTGSTSIGSTSVTKDYPCIFEFDC 1260
Query: 3781 DEVRVRDKETKKLLLQGSNRDGLYVLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQ 3960
DEVRVRDKETKKLLLQGSNRDGLYVLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQ
Sbjct: 1261 DEVRVRDKETKKLLLQGSNRDGLYVLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQ 1320
Query: 3961 QLSSTKSILINKHSKAICEACQSERIHCDLWGPSPVMSVQGFRYYVIFIDNYSRYCWFYP 4140
QLSSTKSILINKHSKAICEACQSERIHCDLWGPSPVMSVQGFRYYVIFIDNYSRYCWFYP
Sbjct: 1321 QLSSTKSILINKHSKAICEACQSERIHCDLWGPSPVMSVQGFRYYVIFIDNYSRYCWFYP 1380
Query: 4141 LKLKSDFYTIFAKFQALVQNQLQSKISIFQCHGGGEFTSKVPQKHWVEAFYTTNFLSNLL 4320
LKLKSDFYTIFAKFQALVQNQLQSKISIFQCHGGGEFTSKVPQKHWVEAFYTTNFLSNLL
Sbjct: 1381 LKLKSDFYTIFAKFQALVQNQLQSKISIFQCHGGGEFTSKVPQKHWVEAFYTTNFLSNLL 1440
Query: 4321 PHTALTDAKSPFELLNKKKPDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVFLGYNEKY 4500
PHTALTDAKSPFELLNKKKPDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVFLGYNEKY
Sbjct: 1441 PHTALTDAKSPFELLNKKKPDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVFLGYNEKY 1500
Query: 4501 KGYRCLLPTTGRVYISRHVIFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSFMPQXXXXXX 4680
KGYRCLLPTTGRVYISRHVIFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSFMPQ
Sbjct: 1501 KGYRCLLPTTGRVYISRHVIFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSFMPQTTASST 1560
Query: 4681 XXXXXXXPFNAAEIQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEESSECTES 4860
PFNAAEIQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEESSECTES
Sbjct: 1561 ASATATSPFNAAEIQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEESSECTES 1620
Query: 4861 INLLPIGNSSSSLANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQSTHP 5040
INLLPIGNSSSSLANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQSTHP
Sbjct: 1621 INLLPIGNSSSSLANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQSTHP 1680
Query: 5041 MITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTWSLV 5220
MITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTWSLV
Sbjct: 1681 MITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTWSLV 1740
Query: 5221 PYTSDMNVLGSKWVFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRM 5400
PYTSDMNVLGSKWVFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRM
Sbjct: 1741 PYTSDMNVLGSKWVFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRM 1800
Query: 5401 VLHVATVMDWEVKQMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQA 5580
VLHVATVMDWEVKQMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQA
Sbjct: 1801 VLHVATVMDWEVKQMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQA 1860
Query: 5581 PRAWFDKFSNYLLEFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTGSNSATMIKLLE 5760
PRAWFDKFSNYLLEFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTGSNSATMIKLLE
Sbjct: 1861 PRAWFDKFSNYLLEFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTGSNSATMIKLLE 1920
Query: 5761 DLNTQFRMKDLGQMHYFLGTQA 5826
DLNTQFRMKDLGQMHYFLGTQA
Sbjct: 1921 DLNTQFRMKDLGQMHYFLGTQA 1942
>pir||C96578 hypothetical protein T18A20.5 [imported] - Arabidopsis
thaliana|gi|6056391|gb|AAF02855.1|AC009324_4 Similar to
retrotransposon proteins [Arabidopsis
thaliana]|gi|15220936|ref|NP_175784.1| hypothetical
protein; protein id: At1g53810.1 [Arabidopsis thaliana]
Length = 1522
Score = 1183 bits (3061), Expect = 0.0
Identities = 626/1133 (55%), Positives = 740/1133 (65%), Gaps = 133/1133 (11%)
Frame = +1
Query: 31 MELYTVPQLNISNCVTVTLTQQNYILWKSQFESFLSGQGLLGFVTGSISAPSPTIPVPDI 210
M YTVP LNISNCVTVTL QQNYILWKSQFESFLSGQGLLGFVTGSISAP+ T V
Sbjct: 1 MAPYTVPPLNISNCVTVTLNQQNYILWKSQFESFLSGQGLLGFVTGSISAPAQTRSVTH- 59
Query: 211 NGVTTDRPNPEFDVWFKTDKVVKSWLLGSFAEDILSVVVNYVTAH--------------- 345
N VT++ PNPEF W +TD+VVKSWLLGSFAEDILSVVVN T+H
Sbjct: 60 NNVTSEEPNPEFYTWHQTDQVVKSWLLGSFAEDILSVVVNCFTSHQVWLTLANHFNRVSS 119
Query: 346 ----ELQRRLQTLEKKDKPMQVYLKELQTIYEQLASVGSPVPEKMKIFAALNGLGREYEP 513
ELQRRLQTLEKKD M+V+LK+L+ I +QLASVGSPVPEKMKIF+ALNGLGREYEP
Sbjct: 120 SRLFELQRRLQTLEKKDNTMEVFLKDLKHICDQLASVGSPVPEKMKIFSALNGLGREYEP 179
Query: 514 IKTSIEGSIDIPPTPKLDEIMPRLNGYDDRLQAYAANSDVSPHLAFNTVQANSVFYTN-- 687
IKT+IE S+D P+ LDE+ +L GYDDRLQ+Y +SPH+AFN ++S +Y N
Sbjct: 180 IKTTIENSVDSNPSLSLDEVASKLRGYDDRLQSYVTEPTISPHVAFNVTHSDSGYYHNNN 239
Query: 688 ---------XXXXXXXXXXXXXXXQERPT-----------CQICGKHGHHALNCWHRFDN 807
Q PT CQICGK GHHAL CWHRFDN
Sbjct: 240 RGKGRSNSGSGKSSFSTRGRGFHQQISPTSGSQAGNSGLVCQICGKAGHHALKCWHRFDN 299
Query: 808 SYQLDVLPQALPATQITDITDHSGSEWVTDSAATAHITNSPRHLQQTKSYAGSDSVMVGN 987
SYQ + LP AL +ITD+TDH G EW+ DSAA+AH+TN+ LQQ++ Y GSDS+MV +
Sbjct: 300 SYQHEDLPMALATMRITDVTDHHGHEWIPDSAASAHVTNNRHVLQQSQPYHGSDSIMVAD 359
Query: 988 GNFLPXXXXXXXXXXXXX-----------------------VTKDYPCIFEFDCDEVRVR 1098
GNFLP +T DYPC EFD D VR+
Sbjct: 360 GNFLPITHTGSGSIASSSGKIPLKEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADSVRIN 419
Query: 1099 DKETKKLLLQGSNRDGLYVLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQQLSSTK 1278
DK TKKLL+ G NRDGLY L+EPKL V YS+RQ +AS EVWHRRLGH N VL QL+S+K
Sbjct: 420 DKATKKLLVMGRNRDGLYSLEEPKLQVLYSTRQNSASSEVWHRRLGHANAEVLHQLASSK 479
Query: 1279 SILI-NKHSKAICEACQS-------------------ERIHCDLWGPSPVMSVQGFRYYV 1398
SI+I NK K +CEAC ERIHCDLWGPSP SVQGFRYYV
Sbjct: 480 SIIIINKVVKTVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSPTSSVQGFRYYV 539
Query: 1399 IFIDNYSRYCWFYPLKLKSDFYTIFAKFQALVQNQLQSKISIFQCHGGGEFTS------- 1557
+FID+YSR+ WFYPLKLKSDF++ F FQ LV+NQL KI IFQC GGGEF S
Sbjct: 540 VFIDHYSRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFISSQFLKHL 599
Query: 1558 ---------------------------------------KVPQKHWVEAFYTTNFLSNLL 1620
K+P K+W+E+F+T NF+ NLL
Sbjct: 600 QDHGIQQNMSCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTANFVINLL 659
Query: 1621 PHTALTDAKSPFELLNKKKPDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVFLGYNEKY 1800
P ++L + +SP++ L K P+Y ALR+FGCAC+PTLRDYA KFDP+SLKCVFLGYNEKY
Sbjct: 660 PTSSLDNNESPYQKLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVFLGYNEKY 719
Query: 1801 KGYRCLLPTTGRVYISRHVIFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSF---MPQXXX 1971
KGYRCL P TGR+YISRHV+FDE++ PF Y HL P TPLL AW +SF P
Sbjct: 720 KGYRCLYPPTGRIYISRHVVFDENTHPFESIYSHLHPQDKTPLLEAWFKSFHHVTPTQPD 779
Query: 1972 XXXXXXXXXXPFNAAEIQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEESSEC 2151
++ +P + G + ++ S Q++ +S V+ S E
Sbjct: 780 QSRYPVSSIPQPETTDLSAAPASVAAETAGPNASDDTS-----QDNETISVVSG--SPER 832
Query: 2152 TESINLLPIGNSSSSLANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQS 2331
T ++ IG+S S AD+S A + SS + + +Q P +N+
Sbjct: 833 TTGLDSASIGDSYHS-----PTADSSHPSPARSSPASSPQGSPIQMAPAQQVQAPVTNE- 886
Query: 2332 THPMITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTW 2511
H M+TR K+GI+KPN RY LLTHKV EPKTVTEALKHPGW AM EE NC E +TW
Sbjct: 887 -HAMVTRGKEGISKPNKRYVLLTHKVSIPEPKTVTEALKHPGWNNAMQEEMGNCKETETW 945
Query: 2512 SLVPYTSDMNVLGSKWVFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSAT 2691
+LVPY+ +MNVLGS WVFRTKL+ADGSLDKLKARLVAKGF QEEGIDYLETYS VVR+ T
Sbjct: 946 TLVPYSPNMNVLGSMWVFRTKLHADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPT 1005
Query: 2692 VRMVLHVATVMDWEVKQMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGL 2871
VR++LHVATV+ WE+KQMDVKNAFLHGDLTETVYM QPAGFV+K KP HVC LHK+LYGL
Sbjct: 1006 VRLILHVATVLKWELKQMDVKNAFLHGDLTETVYMRQPAGFVDKSKPDHVCLLHKSLYGL 1065
Query: 2872 KQAPRAWFDKFSNYLLEFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTEN 3030
KQ+PRAWFD+FSN+LLEFGF CS+ DPSLF+Y ND+ILLLLYVDDMV+T N
Sbjct: 1066 KQSPRAWFDRFSNFLLEFGFICSLFDPSLFVYSSNNDVILLLLYVDDMVITGN 1118
Score = 892 bits (2305), Expect = 0.0
Identities = 463/858 (53%), Positives = 560/858 (64%), Gaps = 92/858 (10%)
Frame = +1
Query: 3526 VPQALPATQITDITDHSGSEWVTDSAATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLPX 3705
+P AL +ITD+TDH G EW+ DSAA+AH+TN+ LQQ++ Y GSDS+MV +GNFLP
Sbjct: 306 LPMALATMRITDVTDHHGHEWIPDSAASAHVTNNRHVLQQSQPYHGSDSIMVADGNFLPI 365
Query: 3706 XXXXXXXXXXXX-----------------------VTKDYPCIFEFDCDEVRVRDKETKK 3816
+T DYPC EFD D VR+ DK TKK
Sbjct: 366 THTGSGSIASSSGKIPLKEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADSVRINDKATKK 425
Query: 3817 LLLQGSNRDGLYVLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQQLSSTKSILI-N 3993
LL+ G NRDGLY L+EPKL V YS+RQ +AS EVWHRRLGH N VL QL+S+KSI+I N
Sbjct: 426 LLVMGRNRDGLYSLEEPKLQVLYSTRQNSASSEVWHRRLGHANAEVLHQLASSKSIIIIN 485
Query: 3994 KHSKAICEACQS-------------------ERIHCDLWGPSPVMSVQGFRYYVIFIDNY 4116
K K +CEAC ERIHCDLWGPSP SVQGFRYYV+FID+Y
Sbjct: 486 KVVKTVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSPTSSVQGFRYYVVFIDHY 545
Query: 4117 SRYCWFYPLKLKSDFYTIFAKFQALVQNQLQSKISIFQCHGGGEFTS------------- 4257
SR+ WFYPLKLKSDF++ F FQ LV+NQL KI IFQC GGGEF S
Sbjct: 546 SRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFISSQFLKHLQDHGIQ 605
Query: 4258 ---------------------------------KVPQKHWVEAFYTTNFLSNLLPHTALT 4338
K+P K+W+E+F+T NF+ NLLP ++L
Sbjct: 606 QNMSCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTANFVINLLPTSSLD 665
Query: 4339 DAKSPFELLNKKKPDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVFLGYNEKYKGYRCL 4518
+ +SP++ L K P+Y ALR+FGCAC+PTLRDYA KFDP+SLKCVFLGYNEKYKGYRCL
Sbjct: 666 NNESPYQKLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVFLGYNEKYKGYRCL 725
Query: 4519 LPTTGRVYISRHVIFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSF---MPQXXXXXXXXX 4689
P TGR+YISRHV+FDE++ PF Y HL P TPLL AW +SF P
Sbjct: 726 YPPTGRIYISRHVVFDENTHPFESIYSHLHPQDKTPLLEAWFKSFHHVTPTQPDQSRYPV 785
Query: 4690 XXXXPFNAAEIQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEESSECTESINL 4869
++ +P + G + ++ S Q++ +S V+ S E T ++
Sbjct: 786 SSIPQPETTDLSAAPASVAAETAGPNASDDTS-----QDNETISVVSG--SPERTTGLDS 838
Query: 4870 LPIGNSSSSLANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQSTHPMIT 5049
IG+S S AD+S A + SS + + +Q P +N+ H M+T
Sbjct: 839 ASIGDSYHS-----PTADSSHPSPARSSPASSPQGSPIQMAPAQQVQAPVTNE--HAMVT 891
Query: 5050 RSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTWSLVPYT 5229
R K+GI+KPN RY LLTHKV EPKTVTEALKHPGW AM EE NC E +TW+LVPY+
Sbjct: 892 RGKEGISKPNKRYVLLTHKVSIPEPKTVTEALKHPGWNNAMQEEMGNCKETETWTLVPYS 951
Query: 5230 SDMNVLGSKWVFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRMVLH 5409
+MNVLGS WVFRTKL+ADGSLDKLKARLVAKGF QEEGIDYLETYS VVR+ TVR++LH
Sbjct: 952 PNMNVLGSMWVFRTKLHADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLILH 1011
Query: 5410 VATVMDWEVKQMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQAPRA 5589
VATV+ WE+KQMDVKNAFLHGDLTETVYM QPAGFV+K KP HVC LHK+LYGLKQ+PRA
Sbjct: 1012 VATVLKWELKQMDVKNAFLHGDLTETVYMRQPAGFVDKSKPDHVCLLHKSLYGLKQSPRA 1071
Query: 5590 WFDKFSNYLLEFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTGSNSATMIKLLEDLN 5769
WFD+FSN+LLEFGF CS+ DPSLF+Y ND+ILLLLYVDDMV+TG+NS ++ LL LN
Sbjct: 1072 WFDRFSNFLLEFGFICSLFDPSLFVYSSNNDVILLLLYVDDMVITGNNSQSLTHLLAALN 1131
Query: 5770 TQFRMKDLGQMHYFLGTQ 5823
+FRMKD+GQ+HYFLG Q
Sbjct: 1132 KEFRMKDMGQVHYFLGIQ 1149
>ref|NP_178712.1| putative retroelement pol polyprotein; protein id: At2g06950.1
[Arabidopsis thaliana]|gi|25301693|pir||F84480 probable
retroelement pol polyprotein [imported] - Arabidopsis
thaliana|gi|3779021|gb|AAC67200.1| putative retroelement
pol polyprotein [Arabidopsis thaliana]
Length = 1402
Score = 1180 bits (3053), Expect = 0.0
Identities = 630/1135 (55%), Positives = 739/1135 (64%), Gaps = 135/1135 (11%)
Frame = +1
Query: 31 MELYTVPQLNISNCVTVTLTQQNYILWKSQFESFLSGQGLLGFVTGSISAPSPTIPVPDI 210
MELY+VP LNISNCVTVTLT +NYILWKSQFESFL GQGLLGFVTGSI APS T V DI
Sbjct: 1 MELYSVPSLNISNCVTVTLTAKNYILWKSQFESFLDGQGLLGFVTGSIPAPSQTSVVSDI 60
Query: 211 NGVTTDRPNPEFDVWFKTDKVVKSWLLGSFAEDILSVVVNYVTAHE-------------- 348
+G T+ PNPE+ WFKTD+VVKSWLLGSF EDILSVVVN T+HE
Sbjct: 61 DGSTSASPNPEYYTWFKTDRVVKSWLLGSFLEDILSVVVNCNTSHEVWISVANHFNRVSS 120
Query: 349 -----LQRRLQTLEKKDKPMQVYLKELQTIYEQLASVGSPVPEKMKIFAALNGLGREYEP 513
LQRRLQ + K+DK M YLK+L+TI +QLASVGSPV EKMKIFAALNGLGREYEP
Sbjct: 121 SRLFELQRRLQNVSKRDKSMDEYLKDLKTICDQLASVGSPVTEKMKIFAALNGLGREYEP 180
Query: 514 IKTSIEGSIDIPPTPKLDEIMPRLNGYDDRLQAYAANSDVSPHLAFNTV---QANSVFYT 684
IKT+IE S+D P P L++++P+L GYDDRLQ Y + VSPH+AFN +N+ Y
Sbjct: 181 IKTTIENSMDALPGPSLEDVIPKLTGYDDRLQGYLEETAVSPHVAFNITTSDDSNASGYF 240
Query: 685 NXXXXXX---------------------XXXXXXXXXQERPT---CQICGKHGHHALNCW 792
N Q T CQICGK GH AL CW
Sbjct: 241 NAYNRGKGKSNRGRNSFSTRGRGFHQQISSTNSSSGSQSGGTSVVCQICGKMGHPALKCW 300
Query: 793 HRFDNSYQLDVLPQALPATQITDITDHSGSEWVTDSAATAHITNSPRHLQQTKSYAGSDS 972
HRF+NSYQ + LP+AL A +ITDITD G+EW+ DSAATAH+TNSPR LQQ++ Y GSD+
Sbjct: 301 HRFNNSYQYEELPRALAAMRITDITDQHGNEWLPDSAATAHVTNSPRSLQQSQPYHGSDA 360
Query: 973 VMVGNGNFLPXXXXXXXXXXXXX-----------------------VTKDYPCIFEFDCD 1083
VMV +GNFLP +T+DYPC EFD D
Sbjct: 361 VMVADGNFLPITHTGSTNLASSSGNVPLTDVLVCPSITKSLLSVSKLTQDYPCTVEFDSD 420
Query: 1084 EVRVRDKETKKLLLQGSNRDGLYVL-DEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQ 1260
VR+ DK TKKLL+ GS DGLY L D+ + F+S+RQ +ASDEVWHRRLGHP+P VLQ
Sbjct: 421 GVRINDKATKKLLIMGSTCDGLYCLKDDSQFKAFFSTRQQSASDEVWHRRLGHPHPQVLQ 480
Query: 1261 QLSSTKSILINKHSKAICEACQS-------------------ERIHCDLWGPSPVMSVQG 1383
QL T SI INK SK++CEACQ ER+HCDLWGPSP+ SVQG
Sbjct: 481 QLVKTNSISINKTSKSLCEACQLGKSTRLPFVSSSFTSNRPLERVHCDLWGPSPITSVQG 540
Query: 1384 FRYYVIFIDNYSRYCWFYPLKLKSDFYTIFAKFQALVQNQLQSKISIFQCHGGGEFT--- 1554
FRYY +FID+YSR+ W YPLKLKSDFY IF F LV+NQL KIS+FQC GGGEF
Sbjct: 541 FRYYAVFIDHYSRFSWIYPLKLKSDFYNIFVAFHKLVENQLNHKISVFQCDGGGEFVNHK 600
Query: 1555 -------------------------------------------SKVPQKHWVEAFYTTNF 1605
SKVP K WVEAF+T NF
Sbjct: 601 FLQHLQNHGIQQHISYPHTPQQNGLAERKHRHLVELGLSMLFQSKVPLKFWVEAFFTANF 660
Query: 1606 LSNLLPHTALTDAKSPFELLNKKKPDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVFLG 1785
L NLLP +A+ DA SP+E L++ PDY ALR FGCACFPT+RDYA +KFDP+SLKCVFLG
Sbjct: 661 LINLLPTSAVEDAISPYEKLHQTTPDYTALRSFGCACFPTMRDYAMNKFDPRSLKCVFLG 720
Query: 1786 YNEKYKGYRCLLPTTGRVYISRHVIFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSFMPQX 1965
YN+KYKGYRCL P TGRVYISRHVIFDE ++PFS Y HL TPLL+AW + F
Sbjct: 721 YNDKYKGYRCLYPPTGRVYISRHVIFDETAYPFSHHYKHLHSQPTTPLLAAWFKGFESSV 780
Query: 1966 XXXXXXXXXXXXPFNAAEIQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEESS 2145
P A + P+ T+ + L S QL QNS+ + + S+ S+
Sbjct: 781 SQAPPKVSPAQPPQRKATLPTPPLFTAAD---FPPLPRRSPQLS-QNSA--AALVSQPST 834
Query: 2146 ECTESINLLPIGNSSSSLANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASN 2325
S + + N SS D+A ++ TV++ + + P +N
Sbjct: 835 TTINSTHPPAVVNESSERTINFDSASIGDSSHSSQLLVDDTVEDLMAAPVPTQQAPPPTN 894
Query: 2326 QSTHPMITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQ 2505
THPMITR+K GITKPNPRY L+HKV Y EPKTVT ALKHPGWT AM EE NC+E
Sbjct: 895 --THPMITRAKVGITKPNPRYVFLSHKVTYPEPKTVTAALKHPGWTGAMTEEMGNCSETN 952
Query: 2506 TWSLVPYTSDMNVLGSKWVFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRS 2685
TWSLVPYT +M+VLGSKWVFRTKL+ADG+L+KLKAR+VAK F QEEGI YLETYS VVR+
Sbjct: 953 TWSLVPYTPNMHVLGSKWVFRTKLHADGTLNKLKARIVAKCFLQEEGIGYLETYSPVVRT 1012
Query: 2686 ATVRMVLHVATVMDWEVKQMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALY 2865
TV++VLH+AT ++WE+KQMDVKNAFLHGDL ETVYM QPAGFV+K KPTHVC LHK++Y
Sbjct: 1013 PTVQLVLHLATALNWELKQMDVKNAFLHGDLNETVYMTQPAGFVDKSKPTHVCLLHKSIY 1072
Query: 2866 GLKQAPRAWFDKFSNYLLEFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTEN 3030
GLKQ+PRAWFDKFS +LLEFGF CS DPSLFIY N+LILLLLYVDDMV+T N
Sbjct: 1073 GLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYAHNNNLILLLLYVDDMVITGN 1127
Score = 898 bits (2321), Expect = 0.0
Identities = 477/885 (53%), Positives = 569/885 (63%), Gaps = 98/885 (11%)
Frame = +1
Query: 3463 VCDACGMDDDP---------NPYIVLYIKIVPQALPATQITDITDHSGSEWVTDSAATAH 3615
VC CG P N Y + +P+AL A +ITDITD G+EW+ DSAATAH
Sbjct: 285 VCQICGKMGHPALKCWHRFNNSY---QYEELPRALAAMRITDITDQHGNEWLPDSAATAH 341
Query: 3616 ITNSPRHLQQTKSYAGSDSVMVGNGNFLPXXXXXXXXXXXXX------------------ 3741
+TNSPR LQQ++ Y GSD+VMV +GNFLP
Sbjct: 342 VTNSPRSLQQSQPYHGSDAVMVADGNFLPITHTGSTNLASSSGNVPLTDVLVCPSITKSL 401
Query: 3742 -----VTKDYPCIFEFDCDEVRVRDKETKKLLLQGSNRDGLYVL-DEPKLLVFYSSRQVA 3903
+T+DYPC EFD D VR+ DK TKKLL+ GS DGLY L D+ + F+S+RQ +
Sbjct: 402 LSVSKLTQDYPCTVEFDSDGVRINDKATKKLLIMGSTCDGLYCLKDDSQFKAFFSTRQQS 461
Query: 3904 ASDEVWHRRLGHPNPHVLQQLSSTKSILINKHSKAICEACQS------------------ 4029
ASDEVWHRRLGHP+P VLQQL T SI INK SK++CEACQ
Sbjct: 462 ASDEVWHRRLGHPHPQVLQQLVKTNSISINKTSKSLCEACQLGKSTRLPFVSSSFTSNRP 521
Query: 4030 -ERIHCDLWGPSPVMSVQGFRYYVIFIDNYSRYCWFYPLKLKSDFYTIFAKFQALVQNQL 4206
ER+HCDLWGPSP+ SVQGFRYY +FID+YSR+ W YPLKLKSDFY IF F LV+NQL
Sbjct: 522 LERVHCDLWGPSPITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDFYNIFVAFHKLVENQL 581
Query: 4207 QSKISIFQCHGGGEFT-------------------------------------------- 4254
KIS+FQC GGGEF
Sbjct: 582 NHKISVFQCDGGGEFVNHKFLQHLQNHGIQQHISYPHTPQQNGLAERKHRHLVELGLSML 641
Query: 4255 --SKVPQKHWVEAFYTTNFLSNLLPHTALTDAKSPFELLNKKKPDYQALRIFGCACFPTL 4428
SKVP K WVEAF+T NFL NLLP +A+ DA SP+E L++ PDY ALR FGCACFPT+
Sbjct: 642 FQSKVPLKFWVEAFFTANFLINLLPTSAVEDAISPYEKLHQTTPDYTALRSFGCACFPTM 701
Query: 4429 RDYAQHKFDPKSLKCVFLGYNEKYKGYRCLLPTTGRVYISRHVIFDEHSFPFSDTYMHLQ 4608
RDYA +KFDP+SLKCVFLGYN+KYKGYRCL P TGRVYISRHVIFDE ++PFS Y HL
Sbjct: 702 RDYAMNKFDPRSLKCVFLGYNDKYKGYRCLYPPTGRVYISRHVIFDETAYPFSHHYKHLH 761
Query: 4609 PTGVTPLLSAWQQSFMPQXXXXXXXXXXXXXPFNAAEIQVSPVITSNNNTGASVLENGSS 4788
TPLL+AW + F P A + P+ T+ + L S
Sbjct: 762 SQPTTPLLAAWFKGFESSVSQAPPKVSPAQPPQRKATLPTPPLFTAAD---FPPLPRRSP 818
Query: 4789 QLPIQNSSVLSTVASEESSECTESINLLPIGNSSSSLANRTDNADTSPLQEAATETNSST 4968
QL QNS+ + + S+ S+ S + + N SS D+A ++ T
Sbjct: 819 QLS-QNSA--AALVSQPSTTTINSTHPPAVVNESSERTINFDSASIGDSSHSSQLLVDDT 875
Query: 4969 VQEAAESTTSSTMQEPASNQSTHPMITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALK 5148
V++ + + P +N THPMITR+K GITKPNPRY L+HKV Y EPKTVT ALK
Sbjct: 876 VEDLMAAPVPTQQAPPPTN--THPMITRAKVGITKPNPRYVFLSHKVTYPEPKTVTAALK 933
Query: 5149 HPGWTAAMHEEYDNCTEAQTWSLVPYTSDMNVLGSKWVFRTKLNADGSLDKLKARLVAKG 5328
HPGWT AM EE NC+E TWSLVPYT +M+VLGSKWVFRTKL+ADG+L+KLKAR+VAK
Sbjct: 934 HPGWTGAMTEEMGNCSETNTWSLVPYTPNMHVLGSKWVFRTKLHADGTLNKLKARIVAKC 993
Query: 5329 FDQEEGIDYLETYSHVVRSATVRMVLHVATVMDWEVKQMDVKNAFLHGDLTETVYMLQPA 5508
F QEEGI YLETYS VVR+ TV++VLH+AT ++WE+KQMDVKNAFLHGDL ETVYM QPA
Sbjct: 994 FLQEEGIGYLETYSPVVRTPTVQLVLHLATALNWELKQMDVKNAFLHGDLNETVYMTQPA 1053
Query: 5509 GFVNKEKPTHVCHLHKALYGLKQAPRAWFDKFSNYLLEFGFNCSIKDPSLFIYLKGNDLI 5688
GFV+K KPTHVC LHK++YGLKQ+PRAWFDKFS +LLEFGF CS DPSLFIY N+LI
Sbjct: 1054 GFVDKSKPTHVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYAHNNNLI 1113
Query: 5689 LLLLYVDDMVLTGSNSATMIKLLEDLNTQFRMKDLGQMHYFLGTQ 5823
LLLLYVDDMV+TG++S T+ LL LN +FRM D+GQ+HYFLG Q
Sbjct: 1114 LLLLYVDDMVITGNSSQTLSSLLAALNKEFRMTDMGQLHYFLGIQ 1158
>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis
thaliana]|gi|25301708|pir||B84523 probable retroelement
pol polyprotein [imported] - Arabidopsis
thaliana|gi|15226030|ref|NP_179099.1| putative
retroelement pol polyprotein; protein id: At2g14930.1
[Arabidopsis thaliana]
Length = 1149
Score = 943 bits (2438), Expect = 0.0
Identities = 544/1153 (47%), Positives = 669/1153 (57%), Gaps = 151/1153 (13%)
Frame = +1
Query: 25 RSMELYTVPQLNISNCVTVTLTQQNYILWKSQFESFLSGQGLLGFVTGSISAPSPTIPVP 204
+SM+LYT+P LNISNCVTV LT +NYILWKSQFESFLSGQGLLGFV G+ +AP+ T+ P
Sbjct: 3 QSMDLYTLPSLNISNCVTVKLTDRNYILWKSQFESFLSGQGLLGFVNGAYAAPTGTVSGP 62
Query: 205 DINGVTTDRPNPEFDVWFKTDKVVKSWLLGSFAEDILSVVVNYVTAHE------------ 348
GVT PNP++ WF++D+VV S EDILSVVV T+HE
Sbjct: 63 QDAGVTEAIPNPDYQAWFRSDQVVMS-------EDILSVVVGSKTSHEVWMNLAKHFNRI 115
Query: 349 -------LQRRLQTLEKKDKPMQVYLKELQTIYEQLASVGSPVPEKMKIFAALNGLGREY 507
LQRRL +L K+ K M+ YL+ L+TI +QLASVGSPV EKMKIFA ++GL REY
Sbjct: 116 SSSRIFELQRRLHSLSKEGKTMEEYLRYLKTICDQLASVGSPVAEKMKIFAMVHGLTREY 175
Query: 508 EPIKTSIEGSIDIPPTPKLDEIMPRLNGYDDRLQAYAANSDVSPHLAFNTVQANSV---- 675
EP+ TS+EG++D P P ++++ RL +DDRLQ Y +DVSPHLAFNT ++++
Sbjct: 176 EPLITSLEGTLDAFPGPSYEDVVYRLKNFDDRLQGYTV-TDVSPHLAFNTFRSSNRGRGG 234
Query: 676 --------FYTNXXXXXX--XXXXXXXXXQERPTCQICGKHGHHALNCWHRFDNSYQ-LD 822
F T E+P CQICGK GH+AL CWHRFD+SYQ +
Sbjct: 235 RNNRGKGNFSTRGRGFQQQFSSSSSSVSASEKPMCQICGKRGHYALQCWHRFDDSYQHSE 294
Query: 823 VLPQALPATQITDITDHSGSEWVTDSAATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLP 1002
A A ITD++D SG WV DSAATAHITN+ LQQ + Y G+D+VM +GNFLP
Sbjct: 295 AAAAAFSALHITDVSDDSG--WVPDSAATAHITNNSSRLQQMQPYLGNDTVMASDGNFLP 352
Query: 1003 XXXXXXXXXXXXX-----------------------VTKDYPCIFEFDCDEVRVRDKETK 1113
+TKDYPC F FD D V V+DK T
Sbjct: 353 ITHIGSANLPSTSGNLPLKDVLVCPNIAKSLLSVSKLTKDYPCSFTFDADGVLVKDKATC 412
Query: 1114 KLLLQGSNR-DGLYVLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQQLSSTKSILI 1290
K+L +GS+ +GLY L+ PK +FYS+RQV A+DEVWH RLGHPNP VLQ L++ K+I I
Sbjct: 413 KVLTKGSSTSEGLYKLENPKFQMFYSTRQVKATDEVWHMRLGHPNPQVLQLLANKKAIQI 472
Query: 1291 NKHSKAICEACQS-------------------ERIHCDLWGPSPVMSVQGFRYYVIFIDN 1413
NK + +CE+C+ ER+HCDLWGP+PV S+QGF+YYVIFIDN
Sbjct: 473 NKSTSKMCESCRLGKSSRLPFIASDFIASRPLERVHCDLWGPAPVSSIQGFQYYVIFIDN 532
Query: 1414 YSRYCWFYPLKLKSDFYTIFAKFQALVQNQLQSKISIFQCHGGGEFT------------- 1554
SR+CWFYPLK KSDF ++F KFQ+ V+N LQ+KI FQ GGGEFT
Sbjct: 533 RSRFCWFYPLKHKSDFCSLFMKFQSFVENLLQTKIGTFQSDGGGEFTSNRFLQHLQESGI 592
Query: 1555 ---------------------------------SKVPQKHWVEAFYTTNFLSNLLPHTAL 1635
SK PQ+ WVEAF+T NFLSNLLP +AL
Sbjct: 593 QHYISCPHTPQQNGLAERKHRQLTERGLTLMFQSKAPQRFWVEAFFTANFLSNLLPTSAL 652
Query: 1636 TDAKSPFELLNKKKPDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVFLGYNEKYKGYRC 1815
+ +P+++L K PDY ALR FGCACFPTLR YA++KFDP+SLKC+FLGY EKYKGYRC
Sbjct: 653 DSSTTPYQVLFGKAPDYSALRTFGCACFPTLRAYARNKFDPRSLKCIFLGYTEKYKGYRC 712
Query: 1816 LLPTTGRVYISRHVIFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSFMP-----QXXXXXX 1980
P T RVY+SRHV+FDE SFPF DTY LQ TP+ AW +SF +
Sbjct: 713 FFPPTNRVYLSRHVLFDESSFPFIDTYTSLQHPSPTPMFDAWLKSFPSSSSPLENDQTAG 772
Query: 1981 XXXXXXXPFNAAEIQVSPVIT----------------SNNNTG-------ASVLENGSSQ 2091
P A+ Q P+++ S+NN + L+ SS+
Sbjct: 773 FNSGASVPVITAQ-QTQPILSLKDGPNILLPEGEITVSSNNQDIEDEPICVTPLQTLSSE 831
Query: 2092 LPIQNSSVLSTVASEESSECTESINLLPIGNSSSSLANRTDNADTSPLQEAATETNSSTV 2271
++S LS + SEE SECT S +L PIGN++ S + R D TS + AATE
Sbjct: 832 DNAKSSETLS-MGSEECSECTASFDLDPIGNNALSSSPRHDQL-TSSIPRAATE------ 883
Query: 2272 QEAAESTTSSTMQEPASNQSTHPMITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKH 2451
STHPM TR KKGI K N R L
Sbjct: 884 -------------------STHPMTTRLKKGIIKLNQRVKL------------------- 905
Query: 2452 PGWTAAMHEEYDNCTEAQTWSLVPYTSDMNVLGSKWVFRTKLNADGSLDKLKARLVAKGF 2631
NV GS ++ +L VA+GF
Sbjct: 906 -----------------------------NVDGSLDKYKARL-------------VAQGF 923
Query: 2632 DQEEGIDYLETYSHVVRSATVRMVLHVATVMDWEVKQMDVKNAFLHGDLTETVYMLQPAG 2811
QEEGIDYLETYS VVRSATVR VLH++T+M+WE+KQMDVKN FLHGDLTETVYM QPAG
Sbjct: 924 KQEEGIDYLETYSPVVRSATVRAVLHLSTIMNWELKQMDVKNGFLHGDLTETVYMKQPAG 983
Query: 2812 FVNKEKPTHVCHLHKALYGLKQAPRAWFDKFSNYLLEFGFNCSIKDPSLFIYLKGNDLIL 2991
F++K P HVC LHKALYGLKQAPRAWFDKFS +LL FGF CS+ DPSLF+ +K D+I+
Sbjct: 984 FIDKAHPDHVCLLHKALYGLKQAPRAWFDKFSKFLLSFGFVCSMSDPSLFVCVKNKDVIM 1043
Query: 2992 LLLYVDDMVLTEN 3030
LLLYVDDMV+T N
Sbjct: 1044 LLLYVDDMVITGN 1056
Score = 720 bits (1859), Expect = 0.0
Identities = 410/853 (48%), Positives = 503/853 (58%), Gaps = 89/853 (10%)
Frame = +1
Query: 3535 ALPATQITDITDHSGSEWVTDSAATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLPXXXX 3714
A A ITD++D SG WV DSAATAHITN+ LQQ + Y G+D+VM +GNFLP
Sbjct: 299 AFSALHITDVSDDSG--WVPDSAATAHITNNSSRLQQMQPYLGNDTVMASDGNFLPITHI 356
Query: 3715 XXXXXXXXX-----------------------VTKDYPCIFEFDCDEVRVRDKETKKLLL 3825
+TKDYPC F FD D V V+DK T K+L
Sbjct: 357 GSANLPSTSGNLPLKDVLVCPNIAKSLLSVSKLTKDYPCSFTFDADGVLVKDKATCKVLT 416
Query: 3826 QGSNR-DGLYVLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQQLSSTKSILINKHS 4002
+GS+ +GLY L+ PK +FYS+RQV A+DEVWH RLGHPNP VLQ L++ K+I INK +
Sbjct: 417 KGSSTSEGLYKLENPKFQMFYSTRQVKATDEVWHMRLGHPNPQVLQLLANKKAIQINKST 476
Query: 4003 KAICEACQS-------------------ERIHCDLWGPSPVMSVQGFRYYVIFIDNYSRY 4125
+CE+C+ ER+HCDLWGP+PV S+QGF+YYVIFIDN SR+
Sbjct: 477 SKMCESCRLGKSSRLPFIASDFIASRPLERVHCDLWGPAPVSSIQGFQYYVIFIDNRSRF 536
Query: 4126 CWFYPLKLKSDFYTIFAKFQALVQNQLQSKISIFQCHGGGEFTS---------------- 4257
CWFYPLK KSDF ++F KFQ+ V+N LQ+KI FQ GGGEFTS
Sbjct: 537 CWFYPLKHKSDFCSLFMKFQSFVENLLQTKIGTFQSDGGGEFTSNRFLQHLQESGIQHYI 596
Query: 4258 ------------------------------KVPQKHWVEAFYTTNFLSNLLPHTALTDAK 4347
K PQ+ WVEAF+T NFLSNLLP +AL +
Sbjct: 597 SCPHTPQQNGLAERKHRQLTERGLTLMFQSKAPQRFWVEAFFTANFLSNLLPTSALDSST 656
Query: 4348 SPFELLNKKKPDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVFLGYNEKYKGYRCLLPT 4527
+P+++L K PDY ALR FGCACFPTLR YA++KFDP+SLKC+FLGY EKYKGYRC P
Sbjct: 657 TPYQVLFGKAPDYSALRTFGCACFPTLRAYARNKFDPRSLKCIFLGYTEKYKGYRCFFPP 716
Query: 4528 TGRVYISRHVIFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSFMPQXXXXXXXXXXXXXPF 4707
T RVY+SRHV+FDE SFPF DTY LQ TP+ AW +SF F
Sbjct: 717 TNRVYLSRHVLFDESSFPFIDTYTSLQHPSPTPMFDAWLKSFPSSSSPLENDQTAG---F 773
Query: 4708 NAAEIQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEESSECTESINLLPIGNS 4887
N+ PVIT+ L++G + L + TV+S E I + P+
Sbjct: 774 NSGASV--PVITAQQTQPILSLKDGPNILLPEGEI---TVSSNNQDIEDEPICVTPLQTL 828
Query: 4888 SSSLANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQSTHPMITRSKKGI 5067
SS DNA +S ET S +E +E T S + +P N +
Sbjct: 829 SSE-----DNAKSS-------ETLSMGSEECSECTASFDL-DPIGNNAL----------- 864
Query: 5068 TKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTWSLVPYTSDMNVL 5247
+PR+ LT + P+ TE S P T+ +
Sbjct: 865 -SSSPRHDQLTSSI----PRAATE------------------------STHPMTTRLKKG 895
Query: 5248 GSKWVFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRMVLHVATVMD 5427
K R KLN DGSLDK KARLVA+GF QEEGIDYLETYS VVRSATVR VLH++T+M+
Sbjct: 896 IIKLNQRVKLNVDGSLDKYKARLVAQGFKQEEGIDYLETYSPVVRSATVRAVLHLSTIMN 955
Query: 5428 WEVKQMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQAPRAWFDKFS 5607
WE+KQMDVKN FLHGDLTETVYM QPAGF++K P HVC LHKALYGLKQAPRAWFDKFS
Sbjct: 956 WELKQMDVKNGFLHGDLTETVYMKQPAGFIDKAHPDHVCLLHKALYGLKQAPRAWFDKFS 1015
Query: 5608 NYLLEFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTGSNSATMIKLLEDLNTQFRMK 5787
+LL FGF CS+ DPSLF+ +K D+I+LLLYVDDMV+TG++S + LL +LN QF+MK
Sbjct: 1016 KFLLSFGFVCSMSDPSLFVCVKNKDVIMLLLYVDDMVITGNSSKLLSSLLSELNKQFKMK 1075
Query: 5788 DLGQMHYFLGTQA 5826
DLG++ YFLG QA
Sbjct: 1076 DLGRLSYFLGIQA 1088
>emb|CAB81478.1| putative protein [Arabidopsis thaliana]|gi|4972079|emb|CAB43904.1|
putative protein [Arabidopsis
thaliana]|gi|7444467|pir||T08945 hypothetical protein
F25O24.20 - Arabidopsis
thaliana|gi|15235485|ref|NP_194619.1| putative protein;
protein id: At4g28900.1 [Arabidopsis thaliana]
Length = 1415
Score = 938 bits (2425), Expect = 0.0
Identities = 512/1122 (45%), Positives = 659/1122 (58%), Gaps = 126/1122 (11%)
Frame = +1
Query: 55 LNISNCVTVTLTQQNYILWKSQFESFLSGQGLLGFVTGSISAPSPTIPVPDINGVTTDRP 234
L S+ VT+ L+ NY+LWK QFE++L+ Q LLGFVTG+ P+ T + + + VT +
Sbjct: 11 LCFSHYVTLKLSTANYLLWKIQFETWLNNQRLLGFVTGANPCPNATRSIRNGDQVT-EAT 69
Query: 235 NPEFDVWFKTDKVVKSWLLGSFAEDILSVVVNYVTAHE-------------------LQR 357
NP+F W + D+ + WLLGS +ED L V T+ E LQR
Sbjct: 70 NPDFLTWVQNDQKIMGWLLGSLSEDALRSVYGLHTSREVWFSLAKKYNRVSASRKSDLQR 129
Query: 358 RLQTLEKKDKPMQVYLKELQTIYEQLASVGSPVPEKMKIFAALNGLGREYEPIKTSIEGS 537
RL + K +K M YL ++ I +QL S+G PVPE KIF LNGLG+EY + T I+GS
Sbjct: 130 RLNPVSKNEKSMLEYLNCVKQICDQLDSIGCPVPENEKIFGVLNGLGQEYMLVSTMIKGS 189
Query: 538 IDIPPTPKLDEIMPRLNGYDDRLQAYAANSDVSPHLAFNTVQANSVFYTNXXXXXXXXXX 717
+D P ++++ +L +DD+LQ N + N +
Sbjct: 190 MDTYPM-SFEDVVFKLINFDDKLQ----NGQSGGNRGRNNYTTKGRGFPQQISSGSPSDS 244
Query: 718 XXXXXQERPTCQICGKHGHHALNCWHRFDNSYQLDVLPQALPATQITDITDHSGSEWVTD 897
RPTCQIC K+GH A CW RFD+++Q + +A A +++D + WVTD
Sbjct: 245 GT-----RPTCQICNKYGHSAYKCWKRFDHAFQSEDFSKAFAAMRVSD---QKSNPWVTD 296
Query: 898 SAATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLPXXXXXXXXXXX-------------- 1035
S AT+HITNS LQ + Y+G DSV+VGN +FLP
Sbjct: 297 SGATSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHIGSAVLTSNQGNLPLRDVLVCP 356
Query: 1036 ---------XXVTKDYPCIFEFDCDEVRVRDKETKKLLLQGSNRDGLYVLDEPKLLVFYS 1188
+T DYPC+ EFD D V V+DK TK+LL +G+ + LY+L+ PK + YS
Sbjct: 357 NITKSLLSVSKLTSDYPCVIEFDSDGVIVKDKLTKQLLTKGTRHNDLYLLENPKFMACYS 416
Query: 1189 SRQVAASDEVWHRRLGHPNPHVLQQLSSTKSILINKHSKAICEACQS------------- 1329
SRQ A SDEVWH RLGHPN VLQQL K+I+I+K S ++C+ACQ
Sbjct: 417 SRQQATSDEVWHMRLGHPNQDVLQQLLRNKAIVISKTSHSLCDACQMGKICKLPFASSDF 476
Query: 1330 ------ERIHCDLWGPSPVMSVQGFRYYVIFIDNYSRYCWFYPLKLKSDFYTIFAKFQAL 1491
ER+HCDLWGP+PV+S QGFRYYVIFIDNYSR+ WFYPL+LKSDF+++F FQ +
Sbjct: 477 VSSRLLERVHCDLWGPAPVVSSQGFRYYVIFIDNYSRFTWFYPLRLKSDFFSVFLTFQKM 536
Query: 1492 VQNQLQSKISIFQCHGGGEFTS-------------------------------------- 1557
V+NQ Q KI+ FQC GGGEF S
Sbjct: 537 VENQCQQKIASFQCDGGGEFISNQFVSHLAECGIRQLISCPYTPQQNGIAERKHRHITEL 596
Query: 1558 --------KVPQKHWVEAFYTTNFLSNLLPHTALTDAKSPFELLNKKKPDYQALRIFGCA 1713
KVPQ WVEAFYT+NFL NLLP + L D KSP+E+L K P Y +LR+FGCA
Sbjct: 597 GSSMMFQGKVPQFLWVEAFYTSNFLCNLLPSSVLKDQKSPYEVLMGKAPVYTSLRVFGCA 656
Query: 1714 CFPTLRDYAQHKFDPKSLKCVFLGYNEKYKGYRCLLPTTGRVYISRHVIFDEHSFPFSDT 1893
C+P LR YA +KFDPKSL CVF GYNEKYKGY+C P TG++YI+RHV+FDE F FSD
Sbjct: 657 CYPNLRPYASNKFDPKSLLCVFTGYNEKYKGYKCFHPPTGKIYINRHVLFDESKFLFSDI 716
Query: 1894 YMHLQPTGVTPLLSAWQQSFMPQXXXXXXXXXXXXXPFNAAEIQVSPVITSNNNTGASVL 2073
Y + L+SAWQ +F+P+ I +P + +NT AS
Sbjct: 717 YSDKVSGTNSTLVSAWQSNFLPKS------------------IPATPEVLDISNTAASFS 758
Query: 2074 ENGSS-----------------QLPIQNSSVLSTVASEESSECTESINLLPIGNSS--SS 2196
+ +PI NS S V + S + I+ GN + S
Sbjct: 759 DEQGEFSGAVGGGGCGCTADLDSVPIGNSLPSSPVTQQNSPQPETPISSAGSGNDAEDSE 818
Query: 2197 LANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQSTHPMITRSKKGITKP 2376
L+ ++N+++S EA TET EAA++T N +HPMITRSK GI KP
Sbjct: 819 LSENSENSESSVFSEATTET------EAADNT----------NDQSHPMITRSKSGIFKP 862
Query: 2377 NPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTWSLVPYTSDMNVLGSK 2556
NP+Y + T K Y PKTV ALK PGWT AM EEYD+ E TW LVP S + LG +
Sbjct: 863 NPKYAMFTVKSNYPVPKTVKTALKDPGWTDAMGEEYDSFEETHTWDLVPPDSFITPLGCR 922
Query: 2557 WVFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRMVLHVATVMDWEV 2736
WVF+TKL ADG+LD+LKARLVAKG++QEEG+DY+ETYS VVR+ATVR +LHVAT+ WE+
Sbjct: 923 WVFKTKLKADGTLDRLKARLVAKGYEQEEGVDYMETYSPVVRTATVRTILHVATINKWEI 982
Query: 2737 KQMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQAPRAWFDKFSNYL 2916
KQ+DVKNAFLHGDL ETVYM QP GF N+++P +VC L+KA+YGLKQAPRAWFDKFS +L
Sbjct: 983 KQLDVKNAFLHGDLKETVYMYQPPGFENQDRPDYVCKLNKAIYGLKQAPRAWFDKFSTFL 1042
Query: 2917 LEFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTENEEAY 3042
LEFGF C+ DPSLF++LKG DL+ LLLY+DDM+LT N + Y
Sbjct: 1043 LEFGFICTYSDPSLFVFLKGRDLMFLLLYMDDMLLTGNNKKY 1084
Score = 780 bits (2015), Expect = 0.0
Identities = 411/839 (48%), Positives = 514/839 (60%), Gaps = 107/839 (12%)
Frame = +1
Query: 3562 ITDHSGSEWVTDSAATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLPXXXXXXXXXXX-- 3735
++D + WVTDS AT+HITNS LQ + Y+G DSV+VGN +FLP
Sbjct: 285 VSDQKSNPWVTDSGATSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHIGSAVLTSNQ 344
Query: 3736 ---------------------XXVTKDYPCIFEFDCDEVRVRDKETKKLLLQGSNRDGLY 3852
+T DYPC+ EFD D V V+DK TK+LL +G+ + LY
Sbjct: 345 GNLPLRDVLVCPNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDKLTKQLLTKGTRHNDLY 404
Query: 3853 VLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQQLSSTKSILINKHSKAICEACQS- 4029
+L+ PK + YSSRQ A SDEVWH RLGHPN VLQQL K+I+I+K S ++C+ACQ
Sbjct: 405 LLENPKFMACYSSRQQATSDEVWHMRLGHPNQDVLQQLLRNKAIVISKTSHSLCDACQMG 464
Query: 4030 ------------------ERIHCDLWGPSPVMSVQGFRYYVIFIDNYSRYCWFYPLKLKS 4155
ER+HCDLWGP+PV+S QGFRYYVIFIDNYSR+ WFYPL+LKS
Sbjct: 465 KICKLPFASSDFVSSRLLERVHCDLWGPAPVVSSQGFRYYVIFIDNYSRFTWFYPLRLKS 524
Query: 4156 DFYTIFAKFQALVQNQLQSKISIFQCHGGGEFTS-------------------------- 4257
DF+++F FQ +V+NQ Q KI+ FQC GGGEF S
Sbjct: 525 DFFSVFLTFQKMVENQCQQKIASFQCDGGGEFISNQFVSHLAECGIRQLISCPYTPQQNG 584
Query: 4258 --------------------KVPQKHWVEAFYTTNFLSNLLPHTALTDAKSPFELLNKKK 4377
KVPQ WVEAFYT+NFL NLLP + L D KSP+E+L K
Sbjct: 585 IAERKHRHITELGSSMMFQGKVPQFLWVEAFYTSNFLCNLLPSSVLKDQKSPYEVLMGKA 644
Query: 4378 PDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVFLGYNEKYKGYRCLLPTTGRVYISRHV 4557
P Y +LR+FGCAC+P LR YA +KFDPKSL CVF GYNEKYKGY+C P TG++YI+RHV
Sbjct: 645 PVYTSLRVFGCACYPNLRPYASNKFDPKSLLCVFTGYNEKYKGYKCFHPPTGKIYINRHV 704
Query: 4558 IFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSFMPQXXXXXXXXXXXXXPFNAAEIQVSPV 4737
+FDE F FSD Y + L+SAWQ +F+P+ I +P
Sbjct: 705 LFDESKFLFSDIYSDKVSGTNSTLVSAWQSNFLPKS------------------IPATPE 746
Query: 4738 ITSNNNTGASVLENGSS-----------------QLPIQNSSVLSTVASEESSECTESIN 4866
+ +NT AS + +PI NS S V + S + I+
Sbjct: 747 VLDISNTAASFSDEQGEFSGAVGGGGCGCTADLDSVPIGNSLPSSPVTQQNSPQPETPIS 806
Query: 4867 LLPIGNSS--SSLANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQSTHP 5040
GN + S L+ ++N+++S EA TET EAA++T N +HP
Sbjct: 807 SAGSGNDAEDSELSENSENSESSVFSEATTET------EAADNT----------NDQSHP 850
Query: 5041 MITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTWSLV 5220
MITRSK GI KPNP+Y + T K Y PKTV ALK PGWT AM EEYD+ E TW LV
Sbjct: 851 MITRSKSGIFKPNPKYAMFTVKSNYPVPKTVKTALKDPGWTDAMGEEYDSFEETHTWDLV 910
Query: 5221 PYTSDMNVLGSKWVFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRM 5400
P S + LG +WVF+TKL ADG+LD+LKARLVAKG++QEEG+DY+ETYS VVR+ATVR
Sbjct: 911 PPDSFITPLGCRWVFKTKLKADGTLDRLKARLVAKGYEQEEGVDYMETYSPVVRTATVRT 970
Query: 5401 VLHVATVMDWEVKQMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQA 5580
+LHVAT+ WE+KQ+DVKNAFLHGDL ETVYM QP GF N+++P +VC L+KA+YGLKQA
Sbjct: 971 ILHVATINKWEIKQLDVKNAFLHGDLKETVYMYQPPGFENQDRPDYVCKLNKAIYGLKQA 1030
Query: 5581 PRAWFDKFSNYLLEFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTGSNSATMIKLL 5757
PRAWFDKFS +LLEFGF C+ DPSLF++LKG DL+ LLLY+DDM+LTG+N + LL
Sbjct: 1031 PRAWFDKFSTFLLEFGFICTYSDPSLFVFLKGRDLMFLLLYMDDMLLTGNNKKYAMDLL 1089
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 138
effective length of database: 245,524,063
effective search space used: 442925409652
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)