BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At3g48770.f
(5700 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190446.1| hypothetical protein; protein id: At3g4877... 3764 0.0
ref|NP_189441.1| hypothetical protein; protein id: At3g2802... 214 1e-53
pir||T05244 hypothetical protein F18A5.140 - Arabidopsis th... 172 7e-41
dbj|BAB01124.1| gene_id:MMG15.6~unknown protein [Arabidopsi... 154 2e-35
pir||T52187 probable transposase [imported] - Arabidopsis t... 81 2e-13
>ref|NP_190446.1| hypothetical protein; protein id: At3g48770.1 [Arabidopsis
thaliana]|gi|11289979|pir||T49273 hypothetical protein
T21J18.40 - Arabidopsis
thaliana|gi|7576215|emb|CAB87905.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1899
Score = 3764 bits (9762), Expect = 0.0
Identities = 1868/1899 (98%), Positives = 1868/1899 (98%)
Frame = +1
Query: 1 MEKAFSPNTSNIKQEKSSNRSSHHKQDLAWNYVREAIDSRRRKVITCGFCGKQYVGSEIN 180
MEKAFSPNTSNIKQEKSSNRSSHHKQDLAWNYVREAIDSRRRKVITCGFCGKQYVGSEIN
Sbjct: 1 MEKAFSPNTSNIKQEKSSNRSSHHKQDLAWNYVREAIDSRRRKVITCGFCGKQYVGSEIN 60
Query: 181 RMKHHLAGLNNRSACQKVSSEVQHSMRKSLEENKEKPKKIIVVDLDMQDDEVNVGXXXXX 360
RMKHHLAGLNNRSACQKVSSEVQHSMRKSLEENKEKPKKIIVVDLDMQDDEVNVG
Sbjct: 61 RMKHHLAGLNNRSACQKVSSEVQHSMRKSLEENKEKPKKIIVVDLDMQDDEVNVGQSSHQ 120
Query: 361 XXXXXXRKRKVQHSMRKSLEETEEKLKQIIVVDLDMQDNEVNVGXXXXXXXXXXNRKRKR 540
RKRKVQHSMRKSLEETEEKLKQIIVVDLDMQDNEVNVG NRKRKR
Sbjct: 121 SCSSSSRKRKVQHSMRKSLEETEEKLKQIIVVDLDMQDNEVNVGQSSLQSFSSSNRKRKR 180
Query: 541 ETKTKPVIIETMTESAKQHIERIRRTKFSIGGAENPLTEDLHQAVKNLSAELYAKDVHFL 720
ETKTKPVIIETMTESAKQHIERIRRTKFSIGGAENPLTEDLHQAVKNLSAELYAKDVHFL
Sbjct: 181 ETKTKPVIIETMTESAKQHIERIRRTKFSIGGAENPLTEDLHQAVKNLSAELYAKDVHFL 240
Query: 721 MELIQNAEDNEYPEGVDPSLEFVITSEDITNTGAPATLLIFNNEKGFSEKNIESICSVGR 900
MELIQNAEDNEYPEGVDPSLEFVITSEDITNTGAPATLLIFNNEKGFSEKNIESICSVGR
Sbjct: 241 MELIQNAEDNEYPEGVDPSLEFVITSEDITNTGAPATLLIFNNEKGFSEKNIESICSVGR 300
Query: 901 STKKGNRKCGYIGEKGIGFKSVFLITSQPYIFSNGYQIRFNEAPCSHCSLGYIVPEWVDQ 1080
STKKGNRKCGYIGEKGIGFKSVFLITSQPYIFSNGYQIRFNEAPCSHCSLGYIVPEWVDQ
Sbjct: 301 STKKGNRKCGYIGEKGIGFKSVFLITSQPYIFSNGYQIRFNEAPCSHCSLGYIVPEWVDQ 360
Query: 1081 HPSLVDIQRMYGSGSALPTTTIILPLKSDKVKPVKEQLSNVHPEVLLFLSKIKRLSIREH 1260
HPSLVDIQRMYGSGSALPTTTIILPLKSDKVKPVKEQLSNVHPEVLLFLSKIKRLSIREH
Sbjct: 361 HPSLVDIQRMYGSGSALPTTTIILPLKSDKVKPVKEQLSNVHPEVLLFLSKIKRLSIREH 420
Query: 1261 CLDPKLSTVNSIGIVSETNFVTRKSIDAESYTIHLSASEKGKNSEQECSYYMWRQKFPVK 1440
CLDPKLSTVNSIGIVSETNFVTRKSIDAESYTIHLSASEKGKNSEQECSYYMWRQKFPVK
Sbjct: 421 CLDPKLSTVNSIGIVSETNFVTRKSIDAESYTIHLSASEKGKNSEQECSYYMWRQKFPVK 480
Query: 1441 HENRVDRRSEVEEWVITLAFPFGERLGHGNNSPGIYAFLPTEMVTNFPFIIQADFILASS 1620
HENRVDRRSEVEEWVITLAFPFGERLGHGNNSPGIYAFLPTEMVTNFPFIIQADFILASS
Sbjct: 481 HENRVDRRSEVEEWVITLAFPFGERLGHGNNSPGIYAFLPTEMVTNFPFIIQADFILASS 540
Query: 1621 REMILLDDIWNQGILNCVPLAFLNAFTSLVKTTDAPVSSLLPAFRFLPVKESNYAKLNVV 1800
REMILLDDIWNQGILNCVPLAFLNAFTSLVKTTDAPVSSLLPAFRFLPVKESNYAKLNVV
Sbjct: 541 REMILLDDIWNQGILNCVPLAFLNAFTSLVKTTDAPVSSLLPAFRFLPVKESNYAKLNVV 600
Query: 1801 RESIRARVCAEEIVPSISHQGQKFFYKPCEVGRLIPTFWDILEKAGSEGASLQNISSHGI 1980
RESIRARVCAEEIVPSISHQGQKFFYKPCEVGRLIPTFWDILEKAGSEGASLQNISSHGI
Sbjct: 601 RESIRARVCAEEIVPSISHQGQKFFYKPCEVGRLIPTFWDILEKAGSEGASLQNISSHGI 660
Query: 1981 YILNSAFDRTEYDNVLNFLGLKQVSNEWYVKCIQGCDLVTSVSEATYVEVLLFIAENWQC 2160
YILNSAFDRTEYDNVLNFLGLKQVSNEWYVKCIQGCDLVTSVSEATYVEVLLFIAENWQC
Sbjct: 661 YILNSAFDRTEYDNVLNFLGLKQVSNEWYVKCIQGCDLVTSVSEATYVEVLLFIAENWQC 720
Query: 2161 RFQNTNMGKVPLIKYVVQKGVXXXXXXXXXXPRTLCLSTEKNQAWLLDWNDEFRCMSNFV 2340
RFQNTNMGKVPLIKYVVQKGV PRTLCLSTEKNQAWLLDWNDEFRCMSNFV
Sbjct: 721 RFQNTNMGKVPLIKYVVQKGVSSLSSLGGFSPRTLCLSTEKNQAWLLDWNDEFRCMSNFV 780
Query: 2341 FMPPTTRTALKVCSKKEIIHTWLKENVKVITLSVSDYAKHLRENLNGDKRLVVAYAHFLH 2520
FMPPTTRTALKVCSKKEIIHTWLKENVKVITLSVSDYAKHLRENLNGDKRLVVAYAHFLH
Sbjct: 781 FMPPTTRTALKVCSKKEIIHTWLKENVKVITLSVSDYAKHLRENLNGDKRLVVAYAHFLH 840
Query: 2521 HSISKDFLSKEEAGKCCKDMPLVDNYGNVNISRNGVLVPASAGKWVSLVGSNPWRHSGYI 2700
HSISKDFLSKEEAGKCCKDMPLVDNYGNVNISRNGVLVPASAGKWVSLVGSNPWRHSGYI
Sbjct: 841 HSISKDFLSKEEAGKCCKDMPLVDNYGNVNISRNGVLVPASAGKWVSLVGSNPWRHSGYI 900
Query: 2701 ELSEEYLLSNRFAGLRSNKKDLLGFLKSSVEAGDIPDIEPPNVAIPALSGPLTKENVLLL 2880
ELSEEYLLSNRFAGLRSNKKDLLGFLKSSVEAGDIPDIEPPNVAIPALSGPLTKENVLLL
Sbjct: 901 ELSEEYLLSNRFAGLRSNKKDLLGFLKSSVEAGDIPDIEPPNVAIPALSGPLTKENVLLL 960
Query: 2881 LEWINKCNRHSLRSNFLNSVRGGSWLRTTMNGVSDYRPPSQSFYHTSSWGSILQNGSILV 3060
LEWINKCNRHSLRSNFLNSVRGGSWLRTTMNGVSDYRPPSQSFYHTSSWGSILQNGSILV
Sbjct: 961 LEWINKCNRHSLRSNFLNSVRGGSWLRTTMNGVSDYRPPSQSFYHTSSWGSILQNGSILV 1020
Query: 3061 DIPLVDRSYYGNEIEKYKEELKIAGVMFEFSEVCRFVGNHLMSLAETSTQSSANVFSILK 3240
DIPLVDRSYYGNEIEKYKEELKIAGVMFEFSEVCRFVGNHLMSLAETSTQSSANVFSILK
Sbjct: 1021 DIPLVDRSYYGNEIEKYKEELKIAGVMFEFSEVCRFVGNHLMSLAETSTQSSANVFSILK 1080
Query: 3241 FIRYLREKRLSPADFITAVKNGPWLKTISGYRSPDGAVLFSEEWKAASLISDIPFIDRGF 3420
FIRYLREKRLSPADFITAVKNGPWLKTISGYRSPDGAVLFSEEWKAASLISDIPFIDRGF
Sbjct: 1081 FIRYLREKRLSPADFITAVKNGPWLKTISGYRSPDGAVLFSEEWKAASLISDIPFIDRGF 1140
Query: 3421 YGVVSLNGYKEELELLGVVVKFPDNYSLIVSHLNTAKLTYLTPDAMFLVLDCMRQLSPHR 3600
YGVVSLNGYKEELELLGVVVKFPDNYSLIVSHLNTAKLTYLTPDAMFLVLDCMRQLSPHR
Sbjct: 1141 YGVVSLNGYKEELELLGVVVKFPDNYSLIVSHLNTAKLTYLTPDAMFLVLDCMRQLSPHR 1200
Query: 3601 LINALWNSSQCFKTKKNGYKSPAECFIPDPEWTCLLSVFDCFPLIDDDFYGSRIFAYKGE 3780
LINALWNSSQCFKTKKNGYKSPAECFIPDPEWTCLLSVFDCFPLIDDDFYGSRIFAYKGE
Sbjct: 1201 LINALWNSSQCFKTKKNGYKSPAECFIPDPEWTCLLSVFDCFPLIDDDFYGSRIFAYKGE 1260
Query: 3781 LKQIGVKLQLEEAVKMFVSTFKQKAISSGLTRCTASSLLSCYKKLMGSLYKYPEELMKSF 3960
LKQIGVKLQLEEAVKMFVSTFKQKAISSGLTRCTASSLLSCYKKLMGSLYKYPEELMKSF
Sbjct: 1261 LKQIGVKLQLEEAVKMFVSTFKQKAISSGLTRCTASSLLSCYKKLMGSLYKYPEELMKSF 1320
Query: 3961 KQFQWLHTKLGDFRAPKDCILFDSEWEPLRLIANLPFIDDGPNWYGKSIHEFRKELESLG 4140
KQFQWLHTKLGDFRAPKDCILFDSEWEPLRLIANLPFIDDGPNWYGKSIHEFRKELESLG
Sbjct: 1321 KQFQWLHTKLGDFRAPKDCILFDSEWEPLRLIANLPFIDDGPNWYGKSIHEFRKELESLG 1380
Query: 4141 VTVELRKGMSHVISSLSLPDPSRIAPSSALSLFRCIKFLREDRFQQLPKELLDKVSVKWL 4320
VTVELRKGMSHVISSLSLPDPSRIAPSSALSLFRCIKFLREDRFQQLPKELLDKVSVKWL
Sbjct: 1381 VTVELRKGMSHVISSLSLPDPSRIAPSSALSLFRCIKFLREDRFQQLPKELLDKVSVKWL 1440
Query: 4321 KTHAGYRSPEECLLFDRTWKLEPCDGPFIDEEYYGSDINSFREELIAIGVGHDSDKACQL 4500
KTHAGYRSPEECLLFDRTWKLEPCDGPFIDEEYYGSDINSFREELIAIGVGHDSDKACQL
Sbjct: 1441 KTHAGYRSPEECLLFDRTWKLEPCDGPFIDEEYYGSDINSFREELIAIGVGHDSDKACQL 1500
Query: 4501 LARNVYKLSETDAISRVYRFLSEAEWKPEKGASSGRIWIPSDEKWADISSCVLFDKDKLF 4680
LARNVYKLSETDAISRVYRFLSEAEWKPEKGASSGRIWIPSDEKWADISSCVLFDKDKLF
Sbjct: 1501 LARNVYKLSETDAISRVYRFLSEAEWKPEKGASSGRIWIPSDEKWADISSCVLFDKDKLF 1560
Query: 4681 GSKFNVLENHYCSGKDHNLLGFFSSAFGVRINPSIEDYCELWKYWEKTKNRLSSHECCAF 4860
GSKFNVLENHYCSGKDHNLLGFFSSAFGVRINPSIEDYCELWKYWEKTKNRLSSHECCAF
Sbjct: 1561 GSKFNVLENHYCSGKDHNLLGFFSSAFGVRINPSIEDYCELWKYWEKTKNRLSSHECCAF 1620
Query: 4861 WSFVVRHGDTVKAEKLLSESFSRLPVHSPDCNNNDGVMLSSISDVFIADDLLLKDMFIDS 5040
WSFVVRHGDTVKAEKLLSESFSRLPVHSPDCNNNDGVMLSSISDVFIADDLLLKDMFIDS
Sbjct: 1621 WSFVVRHGDTVKAEKLLSESFSRLPVHSPDCNNNDGVMLSSISDVFIADDLLLKDMFIDS 1680
Query: 5041 PVFVWYPTPSIPTLSRTRLIEIYRNIGVKEVSKCVEIAEADLTGFKTELQEVVDPKKNLI 5220
PVFVWYPTPSIPTLSRTRLIEIYRNIGVKEVSKCVEIAEADLTGFKTELQEVVDPKKNLI
Sbjct: 1681 PVFVWYPTPSIPTLSRTRLIEIYRNIGVKEVSKCVEIAEADLTGFKTELQEVVDPKKNLI 1740
Query: 5221 GPGLVKLILAFLSDPSLKVETAERLRIIHSLVDIDVKETSETITTEYTLSLPSKGEKLIA 5400
GPGLVKLILAFLSDPSLKVETAERLRIIHSLVDIDVKETSETITTEYTLSLPSKGEKLIA
Sbjct: 1741 GPGLVKLILAFLSDPSLKVETAERLRIIHSLVDIDVKETSETITTEYTLSLPSKGEKLIA 1800
Query: 5401 KAKRMIRWEREKGVVYAEKMEKTCGKRKLLEYATCFAEVIAKGVMWEREDLIGRLSELVK 5580
KAKRMIRWEREKGVVYAEKMEKTCGKRKLLEYATCFAEVIAKGVMWEREDLIGRLSELVK
Sbjct: 1801 KAKRMIRWEREKGVVYAEKMEKTCGKRKLLEYATCFAEVIAKGVMWEREDLIGRLSELVK 1860
Query: 5581 MAYLVEFDEEALEFLMKSKNLQVYEEDEKLISDEFSQVN 5697
MAYLVEFDEEALEFLMKSKNLQVYEEDEKLISDEFSQVN
Sbjct: 1861 MAYLVEFDEEALEFLMKSKNLQVYEEDEKLISDEFSQVN 1899
>ref|NP_189441.1| hypothetical protein; protein id: At3g28020.1 [Arabidopsis thaliana]
Length = 230
Score = 214 bits (546), Expect = 1e-53
Identities = 122/184 (66%), Positives = 139/184 (75%), Gaps = 3/184 (1%)
Frame = +1
Query: 1039 HCSLGYIVPEWVDQHPSLVDIQRMYGSGSALPTTTIILPLKSDKVKPVKEQLSNVHPEVL 1218
+C+LGYIVPEWV++ PSLVDIQ++ G GSA+PTTTII+PLKSDKVKPVKEQLSNVHPEVL
Sbjct: 36 NCNLGYIVPEWVEKRPSLVDIQKINGFGSAIPTTTIIMPLKSDKVKPVKEQLSNVHPEVL 95
Query: 1219 --LFLSKIKRLSIREHCLDPKLSTVNSIGIVSETNFVTRKSIDAESYTIHLSASEKGKNS 1392
LSKI H D K+S VNS GIVSETN V+RKSIDAESY IHLSA K
Sbjct: 96 SSASLSKI-------HYQD-KVSIVNSHGIVSETNLVSRKSIDAESYMIHLSACGK---- 143
Query: 1393 EQECSYYMWRQKFPVKHENRVDRRSEVEEWVITLAFPFGERLGHGNN-SPGIYAFLPTEM 1569
SYYMWRQK VK+ENRV RR EVEE + TL F G+RL G++ P IYAFLPTEM
Sbjct: 144 -TFISYYMWRQKLTVKNENRVGRRGEVEELLTTLVFLLGDRLALGDSFPPSIYAFLPTEM 202
Query: 1570 VTNF 1581
V+N+
Sbjct: 203 VSNY 206
Score = 56.2 bits (134), Expect = 6e-06
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +1
Query: 574 MTESAKQHIERIRRTKFSIGGAENPLTEDLHQAVKN 681
M ES KQHI+ IR TKFSIG A NPLTEDLHQA +N
Sbjct: 1 MAESTKQHIDLIRETKFSIGRAYNPLTEDLHQAHRN 36
Score = 36.2 bits (82), Expect = 6.1
Identities = 21/34 (61%), Positives = 24/34 (69%), Gaps = 1/34 (2%)
Frame = +1
Query: 1750 FRFLPVKE-SNYAKLNVVRESIRARVCAEEIVPS 1848
+ FLP + SNY +LN VRESI ARV AE VPS
Sbjct: 195 YAFLPTEMVSNYEELNDVRESIMARVLAEGNVPS 228
>pir||T05244 hypothetical protein F18A5.140 - Arabidopsis
thaliana|gi|7268079|emb|CAB78417.1| hypothetical protein
[Arabidopsis thaliana]|gi|4455304|emb|CAB36839.1|
hypothetical protein [Arabidopsis
thaliana]|gi|15236340|ref|NP_193111.1| hypothetical
protein; protein id: At4g13750.1 [Arabidopsis thaliana]
Length = 2137
Score = 172 bits (435), Expect = 7e-41
Identities = 130/395 (32%), Positives = 205/395 (50%), Gaps = 26/395 (6%)
Frame = +1
Query: 598 IERIRRTKFSI----GGAENPLTEDLH----QAVKNLSAELYAKDVHFLMELIQNAEDNE 753
I+ IRR +F + G+E + + H +A++ LS ELY++D HF++EL+QNA+DN+
Sbjct: 570 IDSIRRDEFGLDLTSSGSEMSMLQKQHARLGRALQCLSQELYSQDSHFILELVQNADDNK 629
Query: 754 YPEGVDPSLEFVITSEDITNTGAPATLLIFNNEKGFSEKNIESICSVGRSTKKGNRKCGY 933
YPE V+P+L F+ + TG +++ NNE GF +NI ++C VG+STKKG+ GY
Sbjct: 630 YPEHVEPTLTFI-----LQKTG----IVVLNNECGFMPENIRALCDVGQSTKKGSG--GY 678
Query: 934 IGEKGIGFKSVFLITSQPYIFSNGYQIRFNEAPCSHCSLGYIVPEWVDQHPSLVDIQRMY 1113
IG+KGIGFKSVF ++ P I SNG+ +F+ S +GYI+P V H DI+ +
Sbjct: 679 IGKKGIGFKSVFRVSDAPEIHSNGFHFKFD---ISEGQIGYILPTVVPPH----DIESLS 731
Query: 1114 G--SGSALP------TTTIILPLKS-----DKVKPVKEQLSNVHPEVLLFLSKIKRLSIR 1254
SG AL T I LP ++ V ++ S++HP +LLFL +++ + R
Sbjct: 732 SMLSGRALHLKDAGWNTCITLPFRAIDSERTTVNHIEPMFSDLHPSLLLFLHRLQCIVYR 791
Query: 1255 EHCLDPKLSTVNSIGIVSETNFVTRKSIDAESYTIHLSASEKGKNSEQECSYYMWRQKFP 1434
++ ++ V RK + +++ K E ++++ +K
Sbjct: 792 --------------NVLDDSLLVMRKEVVSKNIV-------KVSCGENSMTWFVASEKL- 829
Query: 1435 VKHENRVDRRSEVEEWVITLAFPFGERLGHGNN-----SPGIYAFLPTEMVTNFPFIIQA 1599
+ R +V+ I++ F + L G ++AFLP FIIQ
Sbjct: 830 ----KATNLRDDVQTTEISIGFTL-DMLEDGTYRSCMIQEPVFAFLPLR-TYGLKFIIQG 883
Query: 1600 DFILASSREMILLDDIWNQGILNCVPLAFLNAFTS 1704
DFIL SSRE + D WNQ +L+ P F++A S
Sbjct: 884 DFILTSSREDVDEDSPWNQWLLSEFPGLFVDALRS 918
>dbj|BAB01124.1| gene_id:MMG15.6~unknown protein [Arabidopsis thaliana]
Length = 146
Score = 154 bits (389), Expect = 2e-35
Identities = 92/196 (46%), Positives = 108/196 (54%), Gaps = 1/196 (0%)
Frame = +1
Query: 1039 HCSLGYIVPEWVDQHPSLVDIQRMYGSGSALPTTTIILPLKSDKVKPVKEQLSNVHPEVL 1218
+C+LGYIVPEWV++ PSLVDIQ++ G GSA+PTTTII+PLKSDKV
Sbjct: 8 NCNLGYIVPEWVEKRPSLVDIQKINGFGSAIPTTTIIMPLKSDKV--------------- 52
Query: 1219 LFLSKIKRLSIREHCLDPKLSTVNSIGIVSETNFVTRKSIDAESYTIHLSASEKGKNSEQ 1398
K + + +H EK
Sbjct: 53 -------------------------------------KPVKEQLSNVHPELVEK-----H 70
Query: 1399 ECSYYMWRQKFPVKHENRVDRRSEVEEWVITLAFPFGERLGHGNN-SPGIYAFLPTEMVT 1575
SYYMWRQK VK+ENRV RR EVEE + TL F G+RL G++ P IYAFLPTEMVT
Sbjct: 71 SVSYYMWRQKLTVKNENRVGRRGEVEELLTTLVFLLGDRLALGDSFPPSIYAFLPTEMVT 130
Query: 1576 NFPFIIQADFILASSR 1623
NFPFIIQ DFILASSR
Sbjct: 131 NFPFIIQGDFILASSR 146
>pir||T52187 probable transposase [imported] - Arabidopsis
thaliana|gi|3283026|gb|AAC25101.1| putative transposase
[Arabidopsis thaliana]
Length = 729
Score = 81.3 bits (199), Expect = 2e-13
Identities = 39/95 (41%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Frame = +1
Query: 31 NIKQEKSSNRSSHHKQDLAWNYVREAIDSRRRKVITCGFCGKQYVGSEINRMKHHLAGL- 207
N + ++NRS K D+AW+YV ++ D + + V+ C FC K+ G INRMKHHLAG+
Sbjct: 8 NYEDIAAANRSIRGKSDIAWSYVIQSKDEKGKTVLECAFCHKKKRGGGINRMKHHLAGVK 67
Query: 208 NNRSACQKVSSEVQHSMRKSLEENKEKPKKIIVVD 312
N AC K+S++++ + +L+E + K K+ IV+D
Sbjct: 68 GNTDACLKISADIRFKIVNALKEAENKKKQNIVLD 102
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 138
effective length of database: 245,524,063
effective search space used: 432367874943
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)