BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At3g32110.f
(5736 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189754.1| non-LTR reverse transcriptase, putative; p... 3774 0.0
pir||C84716 hypothetical protein At2g31080 [imported] - Ara... 1529 0.0
ref|NP_680097.1| similar to non-LTR reverse transcriptase, ... 1445 0.0
ref|NP_680730.1| similar to non-LTR reverse transcriptase, ... 1192 0.0
dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase... 1091 0.0
>ref|NP_189754.1| non-LTR reverse transcriptase, putative; protein id: At3g32110.1
[Arabidopsis thaliana]
Length = 1911
Score = 3774 bits (9787), Expect = 0.0
Identities = 1873/1911 (98%), Positives = 1873/1911 (98%)
Frame = +1
Query: 1 MSAGGDSRVLMHGQDATMVDVGGXXXXXXXXXXXXXSWARKVIGTGLGGMPIPEEILDDE 180
MSAGGDSRVLMHGQDATMVDVGG SWARKVIGTGLGGMPIPEEILDDE
Sbjct: 1 MSAGGDSRVLMHGQDATMVDVGGKDRPPEDPPDKPESWARKVIGTGLGGMPIPEEILDDE 60
Query: 181 FVKSRVTLKFPNGVDGEPVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAAVSHRLREMW 360
FVKSRVTLKFPNGVDGEPVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAAVSHRLREMW
Sbjct: 61 FVKSRVTLKFPNGVDGEPVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAAVSHRLREMW 120
Query: 361 KPSGAMYVLDLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVT 540
KPSGAMYVLDLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVT
Sbjct: 121 KPSGAMYVLDLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVT 180
Query: 541 TPIWVRIADMPVSFYHKSILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQG 720
TPIWVRIADMPVSFYHKSILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQG
Sbjct: 181 TPIWVRIADMPVSFYHKSILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQG 240
Query: 721 ALLVNGDRYYVAYEGLTNICSKCGIYGHLVHNCPKELSEQAAAVVNQLRVSEVDVANTVP 900
ALLVNGDRYYVAYEGLTNICSKCGIYGHLVHNCPKELSEQAAAVVNQLRVSEVDVANTVP
Sbjct: 241 ALLVNGDRYYVAYEGLTNICSKCGIYGHLVHNCPKELSEQAAAVVNQLRVSEVDVANTVP 300
Query: 901 QGDGFIMVNKAGRREESGLRNSXXXXXXXXXXXXNQRRELYRRKGAENIALSNSCGRLAD 1080
QGDGFIMVNKAGRREESGLRNS NQRRELYRRKGAENIALSNSCGRLAD
Sbjct: 301 QGDGFIMVNKAGRREESGLRNSGVPAGGDRGVGGNQRRELYRRKGAENIALSNSCGRLAD 360
Query: 1081 DLATKEVRKVANQSESNKENENIQPRAPREQSVEQGKAVVFGALLENRISGPYGGSKEKR 1260
DLATKEVRKVANQSESNKENENIQPRAPREQSVEQGKAVVFGALLENRISGPYGGSKEKR
Sbjct: 361 DLATKEVRKVANQSESNKENENIQPRAPREQSVEQGKAVVFGALLENRISGPYGGSKEKR 420
Query: 1261 PVNKKAGEANGSKPNHVRNNRPTRSLVFGPTKGDYEKLTNGKQIRVEKESFGRVTNGTRT 1440
PVNKKAGEANGSKPNHVRNNRPTRSLVFGPTKGDYEKLTNGKQIRVEKESFGRVTNGTRT
Sbjct: 421 PVNKKAGEANGSKPNHVRNNRPTRSLVFGPTKGDYEKLTNGKQIRVEKESFGRVTNGTRT 480
Query: 1441 VVDGGAATAMEVGVTALNEQECMGQGIVRSGSGVVAQERSPTVAESDLVGQKSRSPGPGV 1620
VVDGGAATAMEVGVTALNEQECMGQGIVRSGSGVVAQERSPTVAESDLVGQKSRSPGPGV
Sbjct: 481 VVDGGAATAMEVGVTALNEQECMGQGIVRSGSGVVAQERSPTVAESDLVGQKSRSPGPGV 540
Query: 1621 VTHERPPTSPNRVIMGMNLVLSGAGVITHERPPAEMDSHALELRSITLGSVYITDVLAIF 1800
VTHERPPTSPNRVIMGMNLVLSGAGVITHERPPAEMDSHALELRSITLGSVYITDVLAIF
Sbjct: 541 VTHERPPTSPNRVIMGMNLVLSGAGVITHERPPAEMDSHALELRSITLGSVYITDVLAIF 600
Query: 1801 ETHAGGDQASRICQGLGFENSFRVDAVGHSGGLWLLWRTGIGEVSVVDSTDQFIHAKDVN 1980
ETHAGGDQASRICQGLGFENSFRVDAVGHSGGLWLLWRTGIGEVSVVDSTDQFIHAKDVN
Sbjct: 601 ETHAGGDQASRICQGLGFENSFRVDAVGHSGGLWLLWRTGIGEVSVVDSTDQFIHAKDVN 660
Query: 1981 GKDNVNLVVVYAAPTASRRSGLWDRLGDVIRSMDGPVVIGGDFNTIVRLDERSGGNGRLS 2160
GKDNVNLVVVYAAPTASRRSGLWDRLGDVIRSMDGPVVIGGDFNTIVRLDERSGGNGRLS
Sbjct: 661 GKDNVNLVVVYAAPTASRRSGLWDRLGDVIRSMDGPVVIGGDFNTIVRLDERSGGNGRLS 720
Query: 2161 SDSLAFGEWINDHSLIDLGFKGNKFTWKRGREERFFVAKRLDRVLCCAHARLKWQEASVL 2340
SDSLAFGEWINDHSLIDLGFKGNKFTWKRGREERFFVAKRLDRVLCCAHARLKWQEASVL
Sbjct: 721 SDSLAFGEWINDHSLIDLGFKGNKFTWKRGREERFFVAKRLDRVLCCAHARLKWQEASVL 780
Query: 2341 HLPFLASDHAPLYVQLTPEVSGNRGRRPFRFEAAWLSHPGFKELLLTSWNKDISTPEALK 2520
HLPFLASDHAPLYVQLTPEVSGNRGRRPFRFEAAWLSHPGFKELLLTSWNKDISTPEALK
Sbjct: 781 HLPFLASDHAPLYVQLTPEVSGNRGRRPFRFEAAWLSHPGFKELLLTSWNKDISTPEALK 840
Query: 2521 VQELLDLHQSXXXXXXXXXXXXXFDVVLEQEEVVWMQKSREKWFVHGDRNTKFFHTSTII 2700
VQELLDLHQS FDVVLEQEEVVWMQKSREKWFVHGDRNTKFFHTSTII
Sbjct: 841 VQELLDLHQSDDLLKKEEELLKDFDVVLEQEEVVWMQKSREKWFVHGDRNTKFFHTSTII 900
Query: 2701 RRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQLPQEGFTALSEAD 2880
RRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQLPQEGFTALSEAD
Sbjct: 901 RRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQLPQEGFTALSEAD 960
Query: 2881 FSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDFFSSGSF 3060
FSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDFFSSGSF
Sbjct: 961 FSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDFFSSGSF 1020
Query: 3061 PQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIGPAQTSF 3240
PQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIGPAQTSF
Sbjct: 1021 PQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIGPAQTSF 1080
Query: 3241 IPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGT 3420
IPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGT
Sbjct: 1081 IPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGT 1140
Query: 3421 WVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAA 3600
WVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAA
Sbjct: 1141 WVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAA 1200
Query: 3601 KKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKI 3780
KKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKI
Sbjct: 1201 KKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKI 1260
Query: 3781 YFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKG 3960
YFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKG
Sbjct: 1261 YFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKG 1320
Query: 3961 RMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKKQHLVAW 4140
RMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKKQHLVAW
Sbjct: 1321 RMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKKQHLVAW 1380
Query: 4141 TRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVHDRNWTV 4320
TRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVHDRNWTV
Sbjct: 1381 TRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVHDRNWTV 1440
Query: 4321 AKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETPIADDSIVPLSLAQM 4500
AKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETPIADDSIVPLSLAQM
Sbjct: 1441 AKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETPIADDSIVPLSLAQM 1500
Query: 4501 LCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKS 4680
LCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKS
Sbjct: 1501 LCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKS 1560
Query: 4681 AFAMLTNDDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDVC 4860
AFAMLTNDDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDVC
Sbjct: 1561 AFAMLTNDDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDVC 1620
Query: 4861 QVCRGGIESILHVLRDCPAMSGIWDRIVPRRLQQSFFTMSLLEWLYSNLRQGLMTEGSDW 5040
QVCRGGIESILHVLRDCPAMSGIWDRIVPRRLQQSFFTMSLLEWLYSNLRQGLMTEGSDW
Sbjct: 1621 QVCRGGIESILHVLRDCPAMSGIWDRIVPRRLQQSFFTMSLLEWLYSNLRQGLMTEGSDW 1680
Query: 5041 STMFAMAVWWGWKWRCSNIFGENKTCRDRVRFIKDLAVEVSIAYSREVELRLSGLRVNKP 5220
STMFAMAVWWGWKWRCSNIFGENKTCRDRVRFIKDLAVEVSIAYSREVELRLSGLRVNKP
Sbjct: 1681 STMFAMAVWWGWKWRCSNIFGENKTCRDRVRFIKDLAVEVSIAYSREVELRLSGLRVNKP 1740
Query: 5221 IRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSAPLAELWGV 5400
IRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSAPLAELWGV
Sbjct: 1741 IRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSAPLAELWGV 1800
Query: 5401 YYGLYMAWAKQLTHLELEVDSEVVVGFLKTGIGETHPLSFLVRLCHNFLSKDWTVRISHV 5580
YYGLYMAWAKQLTHLELEVDSEVVVGFLKTGIGETHPLSFLVRLCHNFLSKDWTVRISHV
Sbjct: 1801 YYGLYMAWAKQLTHLELEVDSEVVVGFLKTGIGETHPLSFLVRLCHNFLSKDWTVRISHV 1860
Query: 5581 YREANSLADGLANHAFSLSLGLHVFDEIPISLVMLLSEDNDGPARLRRVCL 5733
YREANSLADGLANHAFSLSLGLHVFDEIPISLVMLLSEDNDGPARLRRVCL
Sbjct: 1861 YREANSLADGLANHAFSLSLGLHVFDEIPISLVMLLSEDNDGPARLRRVCL 1911
>pir||C84716 hypothetical protein At2g31080 [imported] - Arabidopsis
thaliana|gi|3746069|gb|AAC63844.1| putative non-LTR
retroelement reverse transcriptase [Arabidopsis
thaliana]|gi|15224610|ref|NP_180666.1| putative non-LTR
retroelement reverse transcriptase; protein id:
At2g31080.1 [Arabidopsis thaliana]
Length = 1231
Score = 1529 bits (3960), Expect = 0.0
Identities = 748/1259 (59%), Positives = 926/1259 (73%), Gaps = 12/1259 (0%)
Frame = +1
Query: 1993 VNLVVVYAAPTASRRSGLWDRLGDVIRSMDGPVVIGGDFNTIVRLDERSGGNGRLSSDSL 2172
++L+VVYAAP+ SRRSGLW L DV+ ++GP++IGGDFNTI+ +DER GGNGRLS DSL
Sbjct: 1 MHLIVVYAAPSVSRRSGLWGELKDVVNGLEGPLLIGGDFNTILWVDERMGGNGRLSPDSL 60
Query: 2173 AFGEWINDHSLIDLGFKGNKFTWKRGREERFFVAKRLDRVLCCAHARLKWQEASVLHLPF 2352
AFG+WIN+ SLIDLGFKGNKFTW+RGR+E VAKRLDRV CAHARLKWQEA V HLPF
Sbjct: 61 AFGDWINELSLIDLGFKGNKFTWRRGRQESTVVAKRLDRVFVCAHARLKWQEAVVSHLPF 120
Query: 2353 LASDHAPLYVQLTPEVSGNRGRRPFRFEAAWLSHPGFKELLLTSWNKDIS---------- 2502
+ASDHAPLYVQL P ++ L WN+++
Sbjct: 121 MASDHAPLYVQLEP----------------------LQQRKLRKWNREVFGDIHVRKEKL 158
Query: 2503 TPEALKVQELLDLHQSXXXXXXXXXXXXXFDVVLEQEEVVWMQKSREKWFVHGDRNTKFF 2682
+ +VQ+LL + S D+VLEQEE +W QKSREK+ GDRNT FF
Sbjct: 159 VADIKEVQDLLGVVLSDDLLAKEEVLLKEMDLVLEQEETLWFQKSREKYIELGDRNTTFF 218
Query: 2683 HTSTIIRRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQLPQEGFT 2862
HTSTIIRRRRN+IE L+ +D RW+++ ELE A+ YYKRLYSL+D+ V LP GF
Sbjct: 219 HTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMALTYYKRLYSLEDVSEVRNMLPTGGFA 278
Query: 2863 ALSEADFSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDF 3042
++SEA+ ++L + F+ EV A++SMG++KAPGPDG+QPVFYQQ WE VG SVT+FV++F
Sbjct: 279 SISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEF 338
Query: 3043 FSSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIG 3222
F +G P TND L+VLIAKV KPE+I QFRP+SLCNVLFK ITK+MV RLK VI+KLIG
Sbjct: 339 FETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIG 398
Query: 3223 PAQTSFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKA 3402
PAQ SFIPGRLS DNIV+VQE VHSMRRKKG KGWMLLKLDLEKAYDR+RWD L++TL+A
Sbjct: 399 PAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEA 458
Query: 3403 AGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLI 3582
AGL W IM V PSM +LWNGE+TD+F P RGLRQGDPLSPYLFVLC+ERLCHLI
Sbjct: 459 AGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLI 518
Query: 3583 ESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVS 3762
E+S+ ++WKPI +S G +LSH+CFADDLILFAEAS+ QIR++R VLE+FC ASGQKVS
Sbjct: 519 EASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVS 578
Query: 3763 LEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSR 3942
LEKSKI+FS NV R++ + ISEESG+ TK+LGKYLG+PILQKR+NKETFGEV++R S+R
Sbjct: 579 LEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSAR 638
Query: 3943 LAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKK 4122
LAGWKGR LS AGR+TLTKAVL+SI VH MS I LP STLD LD+ SR FLWGST+EKKK
Sbjct: 639 LAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKK 698
Query: 4123 QHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVH 4302
QHL++W ++C P+ EGG+G+RSA MNKAL+AKVGWR+L D SLWA+VVR KYKVG V
Sbjct: 699 QHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQ 758
Query: 4303 DRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETPIADDSIVP 4482
D +W + WSSTWRSV VGLR+V+ + WV GDG IRFW DRWL + P+ +
Sbjct: 759 DTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVELGTDM 818
Query: 4483 LSLAQMLCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDG 4662
+ + + A D W G+GW++ + ++ + + LL+V+V G D ++W T DG
Sbjct: 819 IPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDG 878
Query: 4663 RFTVKSAFAMLTNDDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQAIMTNSERKRRHL 4842
FTV+SA+++L D R +M S + R+WK+ PERVRVF+WLV IMTN ER RRHL
Sbjct: 879 AFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHL 938
Query: 4843 CDSDVCQVCRGGIESILHVLRDCPAMSGIWDRIVPRRLQQSFFTMSLLEWLYSNLR--QG 5016
++ +C VC G E+ILHVLRDCPAM IW R++P R FF+ SLLEWL++N+ +G
Sbjct: 939 SENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMDPVKG 998
Query: 5017 LMTEGSDWSTMFAMAVWWGWKWRCSNIFGENKTCRDRVRFIKDLAVEVSIAYSREVELRL 5196
+ W T+F M +WW WKWRC ++FGE K CRDR++FIKD+A EV + V R
Sbjct: 999 I------WPTLFGMGIWWAWKWRCCDVFGERKICRDRLKFIKDMAEEVRRVHVGAVGNRP 1052
Query: 5197 SGLRVNKPIRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSA 5376
+G+RV + IRW P +GW KI TDGASRGN GLA+AGG +RN G W GGFA+NIG C+A
Sbjct: 1053 NGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAA 1112
Query: 5377 PLAELWGVYYGLYMAWAKQLTHLELEVDSEVVVGFLKTGIGETHPLSFLVRLCHNFLSKD 5556
PLAELWG YYGL +AW K +EL++D ++VVGFL TG+ HPLSFLVRLC F ++D
Sbjct: 1113 PLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTRD 1172
Query: 5557 WTVRISHVYREANSLADGLANHAFSLSLGLHVFDEIPISLVMLLSEDNDGPARLRRVCL 5733
W VR+SHVYREAN LADGLAN+AF+L LGLH FD P + +LL D +G R V L
Sbjct: 1173 WLVRVSHVYREANRLADGLANYAFTLPLGLHCFDACPEGVRLLLLADVNGTEFPRAVLL 1231
>ref|NP_680097.1| similar to non-LTR reverse transcriptase, putative; protein id:
At3g45253.1 [Arabidopsis thaliana]
Length = 1656
Score = 1445 bits (3740), Expect = 0.0
Identities = 749/1330 (56%), Positives = 941/1330 (70%), Gaps = 9/1330 (0%)
Frame = +1
Query: 13 GDSRVLMHGQ-DATMVDVGGXXXXXXXXXXXXXSWARKVIGTGLGGMPIPEEILDDEFVK 189
G+SRV G+ DATMVD+G W +KV GT +GG+PIPEE++ +EFV
Sbjct: 2 GESRVSSAGERDATMVDIGVKSRPPGAPPDDPGVWVQKVKGTSVGGVPIPEEVISEEFVA 61
Query: 190 SRVTLKFPNGVDGEPVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAAVSHRLREMWKPS 369
R+ ++FPNG DGEPVITIGQEV+DAMNGLWK+CM VKVLGR +SL ++ +LRE+WKP
Sbjct: 62 ERLRVEFPNGEDGEPVITIGQEVVDAMNGLWKRCMVVKVLGRHISLPVLNRKLRELWKPC 121
Query: 370 GAMYVLDLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVTTPI 549
GAMYV+DLPR FFM+RFE EEE+L ALTGGPW+AFG+ L+ +AWSP+F+PL+DEIVTTP+
Sbjct: 122 GAMYVMDLPRQFFMIRFEMEEEYLAALTGGPWKAFGNYLIAQAWSPDFDPLRDEIVTTPV 181
Query: 550 WVRIADMPVSFYHKSILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQGALL 729
WVRI++ P + YHK IL+ +A LG+P+KVDL L FERGRFAR+CVEV+L++PL+G ++
Sbjct: 182 WVRISNFPWNLYHKYILLGIANSLGKPIKVDLNTLSFERGRFARICVEVNLQKPLKGTVV 241
Query: 730 VNGDRYYVAYEGLTNICSKCGIYGHLVHNCPKELSEQAAAVVNQLRVSEVDVANTVP--Q 903
VNG+R+YV+YEGL NICS+CG+YGHLVH CP+ +S + V++ VP
Sbjct: 242 VNGERFYVSYEGLANICSQCGMYGHLVHKCPRGVSHGIGEESMSVEVTKNVQNPVVPTHD 301
Query: 904 GDGFIMVNKAGRREESGLRNSXXXXXXXXXXXXNQRRELYRRKGAENIALSNSCGRLADD 1083
GDGF V + R+ + + + + R+ R+KG E + SNS G+L +D
Sbjct: 302 GDGFTPVRQ--RKTVAQVNRNVNAQGGARVNVNRKSRDHVRKKGNELVVTSNSFGKLGED 359
Query: 1084 LATKEVRKVANQSESNKENENIQPRAPREQSVEQGKAVVFGALLENRISGPYG-GSKEKR 1260
+ T+ RK NKENE +++S EQ K F A E + G G +++R
Sbjct: 360 VETEGRRKEIIGVTDNKENEYPMNSVVQDRSGEQVKVTKFVATTEGKGKGVIREGLRDRR 419
Query: 1261 PVNKKAGEANGSKPNHVRNNRPTRSLVFGPTKGDYEKLTNGKQIRVEKESFGRVTNGTRT 1440
+ KA E+N E NGK++R+E+ S GR
Sbjct: 420 AWSHKAHESN-------------------------ELSANGKRVRIEEISLGRPGGSFFN 454
Query: 1441 VVDGGAATAMEVGVTALNEQECMGQGIVRSGSGVVAQERSPTVAESDLVGQKSRSPGPGV 1620
VDG P + DLVG +
Sbjct: 455 GVDG-----------------------------------EPGHEKPDLVGME-------- 471
Query: 1621 VTHERPPTSPNRVIMGMNLVLSGAGVITHERPPAEMDSHALELRSIT-LGSVYITDVLAI 1797
V E P+ + V+ V++G T PA S L L S+ L Y TD+LA+
Sbjct: 472 VAEEIRPSLEDNVV-----VVAGG---TQGAAPAL--STELTLLSVCYLLKKYKTDLLAV 521
Query: 1798 FETHAGGDQASRICQGLGFENSFRVDAVGHSGGLWLLWRTGIGEVSVVDSTDQFIHAKDV 1977
FETHAGG +A RIC GLGFENSFR+DAVG GG+W+LWR+ IG+V + +S++QF++A+
Sbjct: 522 FETHAGGARADRICHGLGFENSFRIDAVGQRGGIWVLWRSEIGKVEIKESSEQFVYARIE 581
Query: 1978 NGKDNVNLVVVYAAPTASRRSGLWDRLGDVIRSMDGPVVIGGDFNTIVRLDERSGGNGRL 2157
N + +NL+VVYAAPT SRRSGLW++L +VIR +DGPVVIGGDFNTIVRLDER+GGNG L
Sbjct: 582 NEFEILNLIVVYAAPTVSRRSGLWEKLREVIRGIDGPVVIGGDFNTIVRLDERTGGNGCL 641
Query: 2158 SSDSLAFGEWINDHSLIDLGFKGNKFTWKRGREERFFVAKRLDRVLCCAHARLKWQEASV 2337
S DS+AFG+WIN+ SLID+GFKGN+FTWKRG+ ++F++AKRLDR+LCCAH RLKWQEA+V
Sbjct: 642 SPDSVAFGDWINELSLIDMGFKGNRFTWKRGKSQQFYIAKRLDRILCCAHFRLKWQEATV 701
Query: 2338 LHLPFLASDHAPLYVQLTPEVSGNRGRRPFRFEAAWLSHPG-FKELLLTSWNKDISTPEA 2514
HLP LAS HAPLY+QL P+ + RRPFRFEAAWL H F ++ L K+
Sbjct: 702 THLPCLASYHAPLYLQLLPKTGCDPSRRPFRFEAAWLQHEEVFGDIHL---KKEKLLKHI 758
Query: 2515 LKVQELLDLHQSXXXXXXXXXXXXXFDVVLEQEEVVWMQKSREKWFVHGDRNTKFFHTST 2694
+Q+LL+ Q+ D+VLEQEE++W QKSREKW VHGD+NT FFHT
Sbjct: 759 TIIQDLLEQAQTDDLLKQEAELIKELDMVLEQEEMLWYQKSREKWVVHGDKNTSFFHTFA 818
Query: 2695 IIRRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQLPQEGFTALSE 2874
II+RRRN+I+ML+D + RW+ + ELE A++YY+RLYSLDD+D VV++LP+EGF LS
Sbjct: 819 IIQRRRNRIDMLKDEEDRWVVDKAELEKLALEYYRRLYSLDDVDPVVDRLPKEGFARLST 878
Query: 2875 ADFSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDFFSSG 3054
D +L K FS EVE +RSMGK+KAPGPDG+QP+FYQ W+VVGE V+KF +DFF +G
Sbjct: 879 TDHVNLNKQFSVGEVEQVLRSMGKFKAPGPDGYQPIFYQTCWDVVGELVSKFALDFFETG 938
Query: 3055 SFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIGPAQT 3234
P + NDV+VVLIAKVLKPEKITQFRPISLCNVLFK ITK MVGRLKGVI+KL+GPAQ+
Sbjct: 939 QLPAKANDVIVVLIAKVLKPEKITQFRPISLCNVLFKIITKTMVGRLKGVISKLVGPAQS 998
Query: 3235 SFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLP 3414
SFIPGRLSTDNIVVVQE VHSM+RKKG KGWMLLKLDLEKAYDRIRWD LEDTL AAGL
Sbjct: 999 SFIPGRLSTDNIVVVQEAVHSMQRKKGRKGWMLLKLDLEKAYDRIRWDFLEDTLLAAGLS 1058
Query: 3415 GTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSI 3594
G WV WIM+CV GPSM LLWNGEKT++F PLRGLRQGDPLSPYLFVLC+ERLCHLI++++
Sbjct: 1059 GDWVNWIMQCVSGPSMSLLWNGEKTESFTPLRGLRQGDPLSPYLFVLCMERLCHLIDNAV 1118
Query: 3595 AAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKS 3774
KKWKPI +SQ GP+LSHICFADDLIL AEAS+ QIR++RGVLE+FC ASGQKVSLEKS
Sbjct: 1119 MEKKWKPISLSQGGPKLSHICFADDLILLAEASVAQIRIIRGVLERFCLASGQKVSLEKS 1178
Query: 3775 KIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGW 3954
KI+FS+NV RDL IS ESG+K+T+DLGKYLG+P+LQKRINK+TF EV++R SS+LAGW
Sbjct: 1179 KIFFSRNVSRDLEGLISTESGIKSTRDLGKYLGMPVLQKRINKDTFKEVLERVSSKLAGW 1238
Query: 3955 K---GRMLSF 3975
K GR + F
Sbjct: 1239 KVGDGRSIRF 1248
Score = 558 bits (1438), Expect = e-157
Identities = 262/446 (58%), Positives = 321/446 (71%)
Frame = +1
Query: 4396 WVIGDGRQIRFWTDRWLSETPIADDSIVPLSLAQMLCTARDLWRDGTGWDMSQIAPFVTD 4575
W +GDGR IRFWTD+WLS + DD + L L RDLWR+ GWD+++IA +V++
Sbjct: 1238 WKVGDGRSIRFWTDKWLSSKSLIDDVVGALPLGFEQLFVRDLWREEAGWDLTRIALWVSE 1297
Query: 4576 NKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKSAFAMLTNDDSPRQDMSSLYGRVWKV 4755
KR++L A++VD+ TGA DRL+WG + DG+FTV SA++ +T D PRQDM S Y RVWKV
Sbjct: 1298 EKRMELAAIVVDNFTGARDRLSWGESPDGKFTVSSAYSFVTQDLCPRQDMESFYRRVWKV 1357
Query: 4756 QAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDVCQVCRGGIESILHVLRDCPAMSGIWD 4935
APERVR FLW+V Q IMTNSER RRH+CDSD+C VC+GGIE+I+HVLRDCPAMSGIW
Sbjct: 1358 VAPERVRTFLWMVSKQIIMTNSERARRHICDSDICTVCKGGIETIIHVLRDCPAMSGIWQ 1417
Query: 4936 RIVPRRLQQSFFTMSLLEWLYSNLRQGLMTEGSDWSTMFAMAVWWGWKWRCSNIFGENKT 5115
RIVP + + FFT +LLEW+Y+NLR+G++ +G W+T FAMA+WWGWKWRC N+FGEN+
Sbjct: 1418 RIVPPQRRHKFFTQTLLEWIYANLREGIVIDGISWATTFAMALWWGWKWRCCNVFGENRV 1477
Query: 5116 CRDRVRFIKDLAVEVSIAYSREVELRLSGLRVNKPIRWTPPMEGWYKINTDGASRGNPGL 5295
CRDRV+F+KD+A EV+ A ++G RV + IRW P GW+K+NTDGASRGNPG
Sbjct: 1478 CRDRVKFVKDIAAEVTKANVAFGGRAIAGARVERMIRWKEPSVGWFKLNTDGASRGNPGP 1537
Query: 5296 ASAGGVLRNSAGAWCGGFAVNIGRCSAPLAELWGVYYGLYMAWAKQLTHLELEVDSEVVV 5475
A+AGGVLR+ G WCGGFA+NIGRCSAPLA LWGV G W
Sbjct: 1538 ATAGGVLRDENGIWCGGFALNIGRCSAPLAGLWGVTTG----W----------------- 1576
Query: 5476 GFLKTGIGETHPLSFLVRLCHNFLSKDWTVRISHVYREANSLADGLANHAFSLSLGLHVF 5655
IG HPLSFLVR+CH FL +DW VRISHVYREAN L DGLAN+AFSL LG HVF
Sbjct: 1577 ------IGAAHPLSFLVRMCHGFLVRDWIVRISHVYREANRLVDGLANYAFSLPLGFHVF 1630
Query: 5656 DEIPISLVMLLSEDNDGPARLRRVCL 5733
D +P SLV + ED G R+V L
Sbjct: 1631 DVLPSSLVSVFREDESGTECPRQVRL 1656
>ref|NP_680730.1| similar to non-LTR reverse transcriptase, putative; protein id:
At4g20725.1 [Arabidopsis thaliana]
Length = 851
Score = 1192 bits (3085), Expect = 0.0
Identities = 568/853 (66%), Positives = 686/853 (79%), Gaps = 2/853 (0%)
Frame = +1
Query: 3181 MVGRLKGVINKLIGPAQTSFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAY 3360
MV RLK ++ LIGPAQ SFIPGR+STDNIV+VQE VHSMRRKKGVKGWMLLKLDLEKAY
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVLVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 3361 DRIRWDLLEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSP 3540
D IRWD LEDTL +AG P WV+WIM CV GP M LLWNGE+TD+FKPLRGLRQGDPLSP
Sbjct: 61 DTIRWDYLEDTLISAGFPEVWVRWIMCCVSGPEMSLLWNGERTDSFKPLRGLRQGDPLSP 120
Query: 3541 YLFVLCIERLCHLIESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRG 3720
YLFVLC+ERLCHLIE SI K+WKPI +SQ GP+LSHICFADDLILFAEAS+ QIRV+R
Sbjct: 121 YLFVLCMERLCHLIERSIDNKQWKPISLSQGGPKLSHICFADDLILFAEASVMQIRVIRK 180
Query: 3721 VLEKFCGASGQKVSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRIN 3900
VLE FC ASGQK+SLEKSKI+FS NV RD K ISEESG+KAT DLGKYLG+P+L KRIN
Sbjct: 181 VLETFCIASGQKISLEKSKIFFSGNVSRDPSKLISEESGIKATNDLGKYLGMPVLHKRIN 240
Query: 3901 KETFGEVIKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKV 4080
K+TF E++++ SSRL+GWK R LSFAGR+TLTKAVL+SI VHTMS+I LPQST+ LDK
Sbjct: 241 KDTFSELLEKVSSRLSGWKERTLSFAGRMTLTKAVLSSIPVHTMSSIALPQSTITRLDKA 300
Query: 4081 SRAFLWGSTLEKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLW 4260
SR+FLWGST EK+KQHLV+W +VCLP+++GGLGIR+A MNKALIAKVGWR+L D SSLW
Sbjct: 301 SRSFLWGSTAEKRKQHLVSWKKVCLPKKDGGLGIRNAKLMNKALIAKVGWRLLQDQSSLW 360
Query: 4261 AQVVRSKYKVGDVHDRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDR 4440
A+V R KYK+GD+ D W K WSSTWRS+ GL DVI R WV GDG IRFW D
Sbjct: 361 AEVFRKKYKIGDLRDCQWLRKKGTWSSTWRSIVTGLVDVISRGTCWVPGDGHHIRFWRDI 420
Query: 4441 WLSETPIADD--SIVPLSLAQMLCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDS 4614
W+S P+ +D +VP +L + R LW+D +GWD+S+I+P+V++++ L+L A+++D
Sbjct: 421 WVSGKPLWEDGQGVVPANLETE--SVRSLWKDDSGWDISRISPYVSESRCLELRAIVLDH 478
Query: 4615 VTGAHDRLAWGMTSDGRFTVKSAFAMLTNDDSPRQDMSSLYGRVWKVQAPERVRVFLWLV 4794
T A DR++W + +G+F+V SA+ ML+ DDSPR +M + R+W+V+ PERVR F WLV
Sbjct: 479 ETVARDRISWNESQNGQFSVSSAYNMLSWDDSPRPNMEKFFNRIWRVKVPERVRAFFWLV 538
Query: 4795 VNQAIMTNSERKRRHLCDSDVCQVCRGGIESILHVLRDCPAMSGIWDRIVPRRLQQSFFT 4974
VNQ IMT++ER RRH+ +S++CQ+C+GG+E+ LH+LRDCPAMSGIW RIVP+R +++FF
Sbjct: 539 VNQGIMTDAERYRRHIGESEICQICKGGVETTLHILRDCPAMSGIWTRIVPQRKRRAFFD 598
Query: 4975 MSLLEWLYSNLRQGLMTEGSDWSTMFAMAVWWGWKWRCSNIFGENKTCRDRVRFIKDLAV 5154
+L EW++ NL + + S WST+FAMAVWWGWKWRC NIFGE + CRDRV+FIKD+A
Sbjct: 599 KTLFEWVFDNLHEETPFQESSWSTVFAMAVWWGWKWRCGNIFGEKRKCRDRVQFIKDVAK 658
Query: 5155 EVSIAYSREVELRLSGLRVNKPIRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGA 5334
EV +A +R L RV + I W P GWYK+NTDGASRGNPGLA+AGGV+R+ AG
Sbjct: 659 EVFVANARATVLNGIPTRVERQIGWVAPSTGWYKVNTDGASRGNPGLATAGGVIRDGAGN 718
Query: 5335 WCGGFAVNIGRCSAPLAELWGVYYGLYMAWAKQLTHLELEVDSEVVVGFLKTGIGETHPL 5514
WCGGFA+NIGRCSAPLAELWGVYYGLY+AW K LT +ELEVDSE+VVGFLKTGIG+ HPL
Sbjct: 719 WCGGFALNIGRCSAPLAELWGVYYGLYLAWTKALTRVELEVDSELVVGFLKTGIGDQHPL 778
Query: 5515 SFLVRLCHNFLSKDWTVRISHVYREANSLADGLANHAFSLSLGLHVFDEIPISLVMLLSE 5694
SFLVRLCH LSKDW VRI+ VYREAN LADGLAN+AFSL LG H ++P L ++L E
Sbjct: 779 SFLVRLCHGLLSKDWIVRITRVYREANRLADGLANYAFSLPLGFHSLIDVPDDLEVILHE 838
Query: 5695 DNDGPARLRRVCL 5733
D+ G R RRV L
Sbjct: 839 DSLGSTRPRRVRL 851
>dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 591
Score = 1091 bits (2821), Expect = 0.0
Identities = 550/577 (95%), Positives = 551/577 (95%)
Frame = +1
Query: 52 MVDVGGXXXXXXXXXXXXXSWARKVIGTGLGGMPIPEEILDDEFVKSRVTLKFPNGVDGE 231
MVDVGG SWARKVIGTGLGGMPIPEEILDDEFVKSRVTLKFPNGVDGE
Sbjct: 1 MVDVGGKDRPPEDPPDKPESWARKVIGTGLGGMPIPEEILDDEFVKSRVTLKFPNGVDGE 60
Query: 232 PVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAAVSHRLREMWKPSGAMYVLDLPRHFFM 411
PVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAAVSHRLREMWKPSGAMYVLDLPRHFFM
Sbjct: 61 PVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAAVSHRLREMWKPSGAMYVLDLPRHFFM 120
Query: 412 VRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVTTPIWVRIADMPVSFYHK 591
VRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVTTPIWVRIADMPVSFYHK
Sbjct: 121 VRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVTTPIWVRIADMPVSFYHK 180
Query: 592 SILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQGALLVNGDRYYVAYEGLT 771
SILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQGALLVNGDRYYVAYEGLT
Sbjct: 181 SILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQGALLVNGDRYYVAYEGLT 240
Query: 772 NICSKCGIYGHLVHNCPKELSEQAAAVVNQLRVSEVDVANTVPQGDGFIMVNKAGRREES 951
NICSKCGIYGHLVHNCPKELSEQAAAVVNQLRVSEVDVANTVPQGDGFIMVNKAGRREES
Sbjct: 241 NICSKCGIYGHLVHNCPKELSEQAAAVVNQLRVSEVDVANTVPQGDGFIMVNKAGRREES 300
Query: 952 GLRNSXXXXXXXXXXXXNQRRELYRRKGAENIALSNSCGRLADDLATKEVRKVANQSESN 1131
GLRNS NQRRELYRRKGAENIALSNSCGRLADDLATKEVRKVANQSESN
Sbjct: 301 GLRNSGVPAGGDRGVGGNQRRELYRRKGAENIALSNSCGRLADDLATKEVRKVANQSESN 360
Query: 1132 KENENIQPRAPREQSVEQGKAVVFGALLENRISGPYGGSKEKRPVNKKAGEANGSKPNHV 1311
KENENIQPRAPREQSVEQGKAVVFGALLENRISGPYGGSKEKRPVNKKAGEANGSKPNHV
Sbjct: 361 KENENIQPRAPREQSVEQGKAVVFGALLENRISGPYGGSKEKRPVNKKAGEANGSKPNHV 420
Query: 1312 RNNRPTRSLVFGPTKGDYEKLTNGKQIRVEKESFGRVTNGTRTVVDGGAATAMEVGVTAL 1491
RNNRPTRSLVFGPTKGDYEKLTNGKQIRVEKESFGRVTNGTRTVVDGGAATAMEVGVTAL
Sbjct: 421 RNNRPTRSLVFGPTKGDYEKLTNGKQIRVEKESFGRVTNGTRTVVDGGAATAMEVGVTAL 480
Query: 1492 NEQECMGQGIVRSGSGVVAQERSPTVAESDLVGQKSRSPGPGVVTHERPPTSPNRVIMGM 1671
NEQECMGQGIVRSGSGVVAQERSPTVAESDLVGQKSRSPGPGVVTHERPPTSPNRVIMGM
Sbjct: 481 NEQECMGQGIVRSGSGVVAQERSPTVAESDLVGQKSRSPGPGVVTHERPPTSPNRVIMGM 540
Query: 1672 NLVLSGAGVITHERPPAEMDSHALELRSITLGSVYIT 1782
NLVLSGAGVITHERPPAEMDSHALELRSITLGSV +T
Sbjct: 541 NLVLSGAGVITHERPPAEMDSHALELRSITLGSVVVT 577
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 138
effective length of database: 245,524,063
effective search space used: 435314163699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)