BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At3g19780.f
(66 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566646.1| unknown protein; protein id: At3g19780.1 [... 47 6e-05
dbj|BAB01292.1| gene_id:MPN9.2~unknown protein [Arabidopsis... 37 0.066
>ref|NP_566646.1| unknown protein; protein id: At3g19780.1 [Arabidopsis thaliana]
Length = 21
Score = 47.4 bits (111), Expect = 6e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 1 MSELKKNVTQDNLWQETSPKK 63
MSELKKNVTQDNLWQETSPKK
Sbjct: 1 MSELKKNVTQDNLWQETSPKK 21
>dbj|BAB01292.1| gene_id:MPN9.2~unknown protein [Arabidopsis thaliana]
Length = 963
Score = 37.4 bits (85), Expect = 0.066
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 1 MSELKKNVTQDNLWQE 48
MSELKKNVTQDNLWQE
Sbjct: 122 MSELKKNVTQDNLWQE 137
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 0
effective length of database: 431,508,457
effective search space used: 10356202968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)